Wall clock time and date at job start Tue Mar 31 2020 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35348 * 117.00428 * 2 1 4 4 C 1.38990 * 126.40896 * 264.29214 * 3 2 1 5 5 C 1.46927 * 126.49371 * 0.02562 * 4 3 2 6 6 O 1.21667 * 120.00221 * 359.71082 * 5 4 3 7 7 N 1.34779 * 119.99960 * 179.71207 * 5 4 3 8 8 C 1.46492 * 120.00313 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.49394 * 35.06660 * 8 7 5 10 10 C 1.53042 * 109.50255 * 275.00486 * 8 7 5 11 11 C 1.53035 * 109.53739 * 178.64675 * 10 8 7 12 12 C 1.53191 * 109.31494 * 61.36810 * 11 10 8 13 13 N 1.46931 * 108.77140 * 305.35993 * 12 11 10 14 14 C 1.36937 * 120.63301 * 233.58453 * 13 12 11 15 15 H 1.07998 * 120.00129 * 150.67300 * 14 13 12 16 16 C 1.38819 * 119.99541 * 330.67357 * 14 13 12 17 17 N 1.31617 * 120.00163 * 345.46234 * 16 14 13 18 18 Si 1.86807 * 119.99644 * 165.46421 * 16 14 13 19 19 H 1.48503 * 109.46777 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47009 * 299.99720 * 18 16 14 21 21 H 1.48503 * 109.46892 * 59.99751 * 18 16 14 22 22 C 1.46928 * 118.73643 * 53.86252 * 13 12 11 23 23 H 1.08997 * 109.58997 * 65.92792 * 22 13 12 24 24 C 1.53007 * 109.58276 * 186.35081 * 22 13 12 25 25 C 1.41465 * 107.00798 * 179.75104 * 4 3 2 26 26 N 1.30316 * 108.13458 * 0.22513 * 25 4 3 27 27 N 1.34656 * 126.40169 * 84.43000 * 3 2 1 28 28 C 1.46500 * 125.74861 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47854 * 184.67434 * 1 2 3 30 30 H 1.09004 * 109.46830 * 304.67125 * 1 2 3 31 31 H 1.09007 * 109.47049 * 64.66676 * 1 2 3 32 32 H 0.97003 * 120.00054 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.46021 * 58.62687 * 10 8 7 34 34 H 1.09003 * 109.44564 * 298.66275 * 10 8 7 35 35 H 1.09000 * 109.50047 * 301.41141 * 11 10 8 36 36 H 1.09006 * 109.52263 * 181.33142 * 11 10 8 37 37 H 1.08996 * 109.59070 * 185.57881 * 12 11 10 38 38 H 1.08999 * 109.70627 * 65.21497 * 12 11 10 39 39 H 0.96998 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47218 * 59.99883 * 24 22 13 41 41 H 1.09002 * 109.46795 * 180.02562 * 24 22 13 42 42 H 1.09000 * 109.47254 * 299.99487 * 24 22 13 43 43 H 1.08000 * 125.93151 * 180.18947 * 25 4 3 44 44 H 1.08996 * 109.47094 * 275.70728 * 28 27 3 45 45 H 1.09005 * 109.46856 * 35.70249 * 28 27 3 46 46 H 1.09000 * 109.47587 * 155.70043 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5172 1.8904 -1.1130 5 6 2.4450 1.4424 -2.5105 6 8 1.9349 0.3713 -2.7804 7 7 2.9440 2.2179 -3.4934 8 6 2.8726 1.7710 -4.8867 9 1 1.9470 1.2173 -5.0441 10 6 4.0677 0.8661 -5.1949 11 6 3.9759 0.3716 -6.6402 12 6 4.0211 1.5724 -7.5904 13 7 2.9636 2.5180 -7.2079 14 6 2.0501 2.9537 -8.1304 15 1 1.0550 3.2312 -7.8155 16 6 2.4033 3.0387 -9.4702 17 7 3.6704 2.9819 -9.8216 18 14 1.0801 3.2337 -10.7743 19 1 1.7134 3.3006 -12.1158 20 1 0.1564 2.0723 -10.7197 21 1 0.3188 4.4839 -10.5238 22 6 2.9085 2.9920 -5.8183 23 1 3.7911 3.5940 -5.6022 24 6 1.6473 3.8336 -5.6130 25 6 3.0762 3.1031 -0.6461 26 7 2.9491 3.1356 0.6505 27 7 2.3126 1.9657 1.0787 28 6 1.9886 1.6268 2.4666 29 1 -0.3635 -1.0242 0.0837 30 1 -0.3633 0.5846 0.8452 31 1 -0.3633 0.4397 -0.9289 32 1 3.3511 3.0717 -3.2782 33 1 4.0606 0.0120 -4.5177 34 1 4.9922 1.4278 -5.0612 35 1 3.0399 -0.1689 -6.7811 36 1 4.8145 -0.2918 -6.8522 37 1 3.8569 1.2350 -8.6137 38 1 4.9924 2.0617 -7.5184 39 1 3.9172 3.0417 -10.7578 40 1 0.7670 3.2263 -5.8239 41 1 1.6086 4.1845 -4.5818 42 1 1.6681 4.6898 -6.2873 43 1 3.5300 3.8688 -1.2578 44 1 0.9599 1.9165 2.6807 45 1 2.1018 0.5527 2.6143 46 1 2.6630 2.1588 3.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994296804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:41 Heat of formation + Delta-G solvation = 32.549681 kcal Electronic energy + Delta-G solvation = -28191.744254 eV Core-core repulsion = 24312.646783 eV Total energy + Delta-G solvation = -3879.097471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73903 -39.27936 -38.34182 -37.37817 -34.17618 -33.64686 -32.45833 -31.59029 -30.22850 -29.16587 -27.62170 -27.02274 -26.03605 -24.94204 -23.15682 -21.83828 -21.11757 -20.59562 -20.01185 -19.39151 -18.31134 -16.88311 -16.65386 -16.31498 -15.98041 -15.37877 -14.95974 -14.83911 -14.78604 -14.40325 -13.93125 -13.85745 -13.68790 -13.50190 -13.22896 -13.06913 -12.97973 -12.64076 -12.46586 -12.20532 -11.63177 -11.54805 -11.48224 -11.04809 -10.86583 -10.72310 -10.52559 -10.48347 -10.22040 -10.06031 -9.99656 -9.79417 -9.71201 -9.51057 -9.28581 -8.86761 -8.50704 -8.37863 -6.62393 -5.75538 -3.20294 1.05488 1.85756 2.00224 3.23507 3.40376 3.46239 3.46889 3.56203 3.67085 4.16904 4.52812 4.67855 4.70702 4.75302 4.92701 4.99300 5.01989 5.12767 5.33326 5.35393 5.41950 5.53114 5.61806 5.71652 5.81431 5.88460 6.04853 6.14698 6.17084 6.28686 6.41866 6.48076 6.62049 6.72467 6.81779 6.83665 6.94920 7.05123 7.10385 7.15655 7.23834 7.46559 7.73364 7.84647 7.93326 8.48330 8.63905 9.24294 9.86998 10.43626 11.32858 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.002908 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.401697 B = 9625.792682 C = 9651.995113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.295 6.295 3 C 0.317 3.683 4 C -0.289 4.289 5 C 0.591 3.409 6 O -0.542 6.542 7 N -0.715 5.715 8 C 0.134 3.866 9 H 0.085 0.915 10 C -0.117 4.117 11 C -0.140 4.140 12 C 0.169 3.831 13 N -0.583 5.583 14 C -0.251 4.251 15 H 0.070 0.930 16 C 0.004 3.996 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.291 1.291 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.168 3.832 23 H 0.028 0.972 24 C -0.136 4.136 25 C 0.092 3.908 26 N -0.281 5.281 27 N -0.374 5.374 28 C 0.094 3.906 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.393 0.607 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.196 0.804 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -1.840 22.790 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.144 3.856 4 C -0.304 4.304 5 C 0.377 3.623 6 O -0.420 6.420 7 N -0.364 5.364 8 C 0.029 3.971 9 H 0.104 0.896 10 C -0.156 4.156 11 C -0.180 4.180 12 C 0.044 3.956 13 N -0.306 5.306 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.217 1.217 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.060 3.940 23 H 0.046 0.954 24 C -0.194 4.194 25 C -0.095 4.095 26 N -0.103 5.103 27 N -0.164 5.164 28 C -0.047 4.047 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.227 0.773 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.213 0.787 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.006 -2.221 23.551 23.846 hybrid contribution -0.642 0.142 -1.157 1.331 sum -3.648 -2.079 22.394 22.784 Atomic orbital electron populations 1.23131 0.76780 1.04169 1.01480 1.86027 1.21288 1.20250 1.92850 1.19329 0.95293 0.84616 0.86403 1.20198 1.17923 0.98537 0.93789 1.16946 0.78125 0.84042 0.83167 1.90796 1.45427 1.22084 1.83666 1.45880 1.60962 1.22410 1.07193 1.21837 0.99321 0.97575 0.78381 0.89644 1.21766 0.97698 0.98622 0.97496 1.22178 1.00557 1.00121 0.95100 1.20846 0.90182 0.86913 0.97679 1.44044 1.33957 1.48994 1.03585 1.19130 0.91985 1.39565 0.87355 0.91269 1.25080 0.95672 1.00508 0.98216 1.70004 1.14561 1.53979 1.16234 0.86382 0.81241 0.78156 0.81038 1.21689 1.21009 1.20922 1.20658 0.96104 0.90923 0.86343 0.95415 1.21813 0.98110 1.00374 0.99073 1.23968 0.97162 0.96504 0.91908 1.77211 1.18464 1.01108 1.13546 1.48945 1.45906 1.14510 1.07020 1.21972 1.02346 1.02607 0.77765 0.87624 0.93698 0.91871 0.77318 0.93141 0.92813 0.92573 0.93111 0.89332 0.96332 0.93623 0.92759 0.94238 0.91814 0.78694 0.90503 0.89148 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.13 101.05 1.12 1.48 16 2 O -0.30 -3.75 9.83 -24.99 -0.25 -4.00 16 3 C 0.32 4.08 6.99 -16.03 -0.11 3.97 16 4 C -0.29 -3.96 6.15 -104.87 -0.64 -4.60 16 5 C 0.59 9.63 7.76 -12.74 -0.10 9.54 16 6 O -0.54 -10.78 16.05 -2.03 -0.03 -10.82 16 7 N -0.71 -10.79 4.59 -54.70 -0.25 -11.04 16 8 C 0.13 2.47 2.01 -67.59 -0.14 2.34 16 9 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 10 C -0.12 -2.17 5.46 -26.69 -0.15 -2.32 16 11 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 12 C 0.17 4.03 5.28 -3.71 -0.02 4.01 16 13 N -0.58 -14.22 2.98 -164.52 -0.49 -14.71 16 14 C -0.25 -6.67 8.59 -15.06 -0.13 -6.80 16 15 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 16 C 0.00 0.10 4.97 -17.43 -0.09 0.02 16 17 N -0.90 -25.84 11.13 55.49 0.62 -25.22 16 18 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C 0.17 3.36 3.05 -67.37 -0.21 3.16 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.14 -2.52 7.84 37.16 0.29 -2.22 16 25 C 0.09 1.02 11.50 -16.97 -0.20 0.82 16 26 N -0.28 -3.26 12.47 30.88 0.39 -2.87 16 27 N -0.37 -4.01 3.99 -67.67 -0.27 -4.28 16 28 C 0.09 0.57 11.38 59.85 0.68 1.25 16 29 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 4.78 7.55 -40.82 -0.31 4.47 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.05 1.06 7.44 -51.93 -0.39 0.67 16 41 H 0.04 0.60 7.82 -51.93 -0.41 0.19 16 42 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 43 H 0.20 1.49 7.50 -52.49 -0.39 1.09 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -33.86 373.95 -6.65 -40.52 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.13 Total: 2.60 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 0.16 Total: 7.67 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.01 Total: -58.13 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.28 Total: -14.81 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.86 -6.65 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.066 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds