Wall clock time and date at job start Tue Mar 31 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35348 * 117.00428 * 2 1 4 4 C 1.38990 * 126.40896 * 264.29214 * 3 2 1 5 5 C 1.46927 * 126.49371 * 0.02562 * 4 3 2 6 6 O 1.21667 * 120.00221 * 359.71082 * 5 4 3 7 7 N 1.34779 * 119.99960 * 179.71207 * 5 4 3 8 8 C 1.46492 * 120.00313 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.49394 * 35.06660 * 8 7 5 10 10 C 1.53042 * 109.50255 * 275.00486 * 8 7 5 11 11 C 1.53035 * 109.53739 * 178.64675 * 10 8 7 12 12 C 1.53191 * 109.31494 * 61.36810 * 11 10 8 13 13 N 1.46931 * 108.77140 * 305.35993 * 12 11 10 14 14 C 1.36937 * 120.63301 * 233.58453 * 13 12 11 15 15 H 1.07998 * 120.00129 * 150.67300 * 14 13 12 16 16 C 1.38819 * 119.99541 * 330.67357 * 14 13 12 17 17 N 1.31617 * 120.00163 * 345.46234 * 16 14 13 18 18 Si 1.86807 * 119.99644 * 165.46421 * 16 14 13 19 19 H 1.48503 * 109.46777 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47009 * 299.99720 * 18 16 14 21 21 H 1.48503 * 109.46892 * 59.99751 * 18 16 14 22 22 C 1.46928 * 118.73643 * 53.86252 * 13 12 11 23 23 H 1.08997 * 109.58997 * 65.92792 * 22 13 12 24 24 C 1.53007 * 109.58276 * 186.35081 * 22 13 12 25 25 C 1.41465 * 107.00798 * 179.75104 * 4 3 2 26 26 N 1.30316 * 108.13458 * 0.22513 * 25 4 3 27 27 N 1.34656 * 126.40169 * 84.43000 * 3 2 1 28 28 C 1.46500 * 125.74861 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47854 * 184.67434 * 1 2 3 30 30 H 1.09004 * 109.46830 * 304.67125 * 1 2 3 31 31 H 1.09007 * 109.47049 * 64.66676 * 1 2 3 32 32 H 0.97003 * 120.00054 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.46021 * 58.62687 * 10 8 7 34 34 H 1.09003 * 109.44564 * 298.66275 * 10 8 7 35 35 H 1.09000 * 109.50047 * 301.41141 * 11 10 8 36 36 H 1.09006 * 109.52263 * 181.33142 * 11 10 8 37 37 H 1.08996 * 109.59070 * 185.57881 * 12 11 10 38 38 H 1.08999 * 109.70627 * 65.21497 * 12 11 10 39 39 H 0.96998 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47218 * 59.99883 * 24 22 13 41 41 H 1.09002 * 109.46795 * 180.02562 * 24 22 13 42 42 H 1.09000 * 109.47254 * 299.99487 * 24 22 13 43 43 H 1.08000 * 125.93151 * 180.18947 * 25 4 3 44 44 H 1.08996 * 109.47094 * 275.70728 * 28 27 3 45 45 H 1.09005 * 109.46856 * 35.70249 * 28 27 3 46 46 H 1.09000 * 109.47587 * 155.70043 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5172 1.8904 -1.1130 5 6 2.4450 1.4424 -2.5105 6 8 1.9349 0.3713 -2.7804 7 7 2.9440 2.2179 -3.4934 8 6 2.8726 1.7710 -4.8867 9 1 1.9470 1.2173 -5.0441 10 6 4.0677 0.8661 -5.1949 11 6 3.9759 0.3716 -6.6402 12 6 4.0211 1.5724 -7.5904 13 7 2.9636 2.5180 -7.2079 14 6 2.0501 2.9537 -8.1304 15 1 1.0550 3.2312 -7.8155 16 6 2.4033 3.0387 -9.4702 17 7 3.6704 2.9819 -9.8216 18 14 1.0801 3.2337 -10.7743 19 1 1.7134 3.3006 -12.1158 20 1 0.1564 2.0723 -10.7197 21 1 0.3188 4.4839 -10.5238 22 6 2.9085 2.9920 -5.8183 23 1 3.7911 3.5940 -5.6022 24 6 1.6473 3.8336 -5.6130 25 6 3.0762 3.1031 -0.6461 26 7 2.9491 3.1356 0.6505 27 7 2.3126 1.9657 1.0787 28 6 1.9886 1.6268 2.4666 29 1 -0.3635 -1.0242 0.0837 30 1 -0.3633 0.5846 0.8452 31 1 -0.3633 0.4397 -0.9289 32 1 3.3511 3.0717 -3.2782 33 1 4.0606 0.0120 -4.5177 34 1 4.9922 1.4278 -5.0612 35 1 3.0399 -0.1689 -6.7811 36 1 4.8145 -0.2918 -6.8522 37 1 3.8569 1.2350 -8.6137 38 1 4.9924 2.0617 -7.5184 39 1 3.9172 3.0417 -10.7578 40 1 0.7670 3.2263 -5.8239 41 1 1.6086 4.1845 -4.5818 42 1 1.6681 4.6898 -6.2873 43 1 3.5300 3.8688 -1.2578 44 1 0.9599 1.9165 2.6807 45 1 2.1018 0.5527 2.6143 46 1 2.6630 2.1588 3.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994296804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:40 Heat of formation + Delta-G solvation = 8.654306 kcal Electronic energy + Delta-G solvation = -28192.780435 eV Core-core repulsion = 24312.646783 eV Total energy + Delta-G solvation = -3880.133653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61964 -40.67926 -39.20890 -38.96216 -35.78407 -34.53530 -34.06005 -33.32367 -31.38753 -30.58990 -28.56419 -27.80505 -27.52708 -26.78411 -24.45484 -23.16425 -22.32550 -21.99280 -21.26072 -20.95044 -19.32755 -18.27245 -17.84493 -17.48539 -17.27100 -16.82499 -16.29667 -15.86708 -15.77982 -15.61100 -15.55462 -15.34761 -14.93646 -14.74247 -14.59272 -14.41907 -14.21890 -13.59279 -13.57229 -13.29810 -13.18563 -12.91219 -12.75985 -12.67133 -12.48999 -12.43296 -12.33157 -11.98800 -11.77713 -11.72464 -11.57193 -11.33001 -11.12654 -10.81558 -10.49310 -10.48438 -10.03123 -9.64506 -8.60704 -7.81744 -5.28140 0.14210 1.09070 1.09703 1.48941 1.51680 1.57443 2.25094 2.36492 2.58274 2.62229 3.33704 3.39513 3.68997 3.89856 3.98859 4.03500 4.10406 4.15962 4.26557 4.30886 4.34222 4.37249 4.42539 4.54081 4.60950 4.65641 4.67249 4.67922 4.84551 4.93945 4.98695 5.06024 5.09593 5.18105 5.28691 5.34127 5.37456 5.50710 5.55819 5.67550 5.73968 5.81830 6.26519 6.39390 6.45846 6.74079 7.20169 7.41014 7.90834 8.42443 9.24865 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.002908 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.401697 B = 9625.792682 C = 9651.995113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.318 4.318 5 C 0.593 3.407 6 O -0.585 6.585 7 N -0.702 5.702 8 C 0.152 3.848 9 H 0.056 0.944 10 C -0.109 4.109 11 C -0.129 4.129 12 C 0.176 3.824 13 N -0.601 5.601 14 C -0.253 4.253 15 H 0.072 0.928 16 C -0.049 4.049 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.296 1.296 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.165 3.835 23 H 0.037 0.963 24 C -0.127 4.127 25 C 0.102 3.898 26 N -0.292 5.292 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.411 0.589 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.005 0.995 39 H 0.248 0.752 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.227 0.773 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -1.127 25.405 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.138 3.862 4 C -0.334 4.334 5 C 0.382 3.618 6 O -0.466 6.466 7 N -0.353 5.353 8 C 0.045 3.955 9 H 0.074 0.926 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.051 3.949 13 N -0.325 5.325 14 C -0.383 4.383 15 H 0.090 0.910 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.789 3.211 19 H -0.222 1.222 20 H -0.209 1.209 21 H -0.200 1.200 22 C 0.058 3.942 23 H 0.055 0.945 24 C -0.185 4.185 25 C -0.085 4.085 26 N -0.115 5.115 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.143 0.857 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.247 0.753 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.243 0.757 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.427 -1.471 26.235 26.499 hybrid contribution -0.542 -0.113 -1.823 1.905 sum -3.969 -1.584 24.413 24.784 Atomic orbital electron populations 1.23318 0.75085 1.05867 1.01525 1.85985 1.22973 1.20450 1.92988 1.19475 0.95013 0.84624 0.87084 1.20045 1.20474 1.00347 0.92514 1.17276 0.77034 0.83330 0.84205 1.90772 1.47356 1.24010 1.84427 1.45600 1.60974 1.23113 1.05599 1.21344 0.97934 0.96343 0.79883 0.92560 1.21688 0.98270 0.98799 0.96064 1.22018 1.00742 0.98697 0.95417 1.20635 0.89401 0.88009 0.96891 1.44285 1.33615 1.49518 1.05048 1.19422 0.92578 1.38254 0.88038 0.91025 1.25762 0.97347 1.01241 1.00052 1.70149 1.16152 1.55725 1.16001 0.85444 0.78957 0.78228 0.78435 1.22187 1.20915 1.19992 1.20817 0.97197 0.91789 0.84357 0.94532 1.21727 0.96546 0.99172 1.01039 1.24396 0.96179 0.96019 0.91899 1.77199 1.18854 1.01670 1.13733 1.49262 1.44680 1.13661 1.08041 1.22386 1.03987 1.03728 0.75586 0.85658 0.90942 0.94012 0.75252 0.93022 0.91502 0.93866 0.91106 0.92652 0.97732 0.94255 0.94226 0.90506 0.93219 0.75695 0.88391 0.87980 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.13 113.37 1.26 1.87 16 2 O -0.31 -7.64 9.83 -79.45 -0.78 -8.42 16 3 C 0.31 7.57 6.99 84.44 0.59 8.16 16 4 C -0.32 -8.21 6.15 -20.03 -0.12 -8.33 16 5 C 0.59 18.79 7.76 86.52 0.67 19.46 16 6 O -0.58 -23.36 16.05 2.69 0.04 -23.32 16 7 N -0.70 -20.06 4.59 -445.22 -2.05 -22.11 16 8 C 0.15 5.48 2.01 45.22 0.09 5.57 16 9 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 10 C -0.11 -3.96 5.46 30.62 0.17 -3.79 16 11 C -0.13 -5.20 6.08 30.67 0.19 -5.02 16 12 C 0.18 8.57 5.28 86.36 0.46 9.02 16 13 N -0.60 -29.62 2.98 -674.41 -2.01 -31.64 16 14 C -0.25 -13.60 8.59 84.04 0.72 -12.88 16 15 H 0.07 3.75 6.23 -2.91 -0.02 3.73 16 16 C -0.05 -2.70 4.97 84.86 0.42 -2.28 16 17 N -0.93 -54.77 11.13 21.65 0.24 -54.53 16 18 Si 0.96 44.95 29.58 68.60 2.03 46.98 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 22 C 0.17 6.50 3.05 45.12 0.14 6.64 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 C -0.13 -4.56 7.84 71.98 0.56 -3.99 16 25 C 0.10 1.99 11.50 85.71 0.99 2.97 16 26 N -0.29 -5.99 12.47 -56.22 -0.70 -6.69 16 27 N -0.37 -6.98 3.99 -479.81 -1.91 -8.89 16 28 C 0.08 0.74 11.38 127.77 1.45 2.20 16 29 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.41 8.86 7.55 -92.71 -0.70 8.16 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.04 1.52 7.44 -2.39 -0.02 1.50 16 41 H 0.08 2.14 7.82 -2.39 -0.02 2.12 16 42 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 43 H 0.23 2.62 7.50 -2.91 -0.02 2.60 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -75.02 373.95 2.73 -72.28 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.29 Total: 16.73 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.58 Total: 19.61 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -6.43 Total: -123.86 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.74 Total: -31.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -75.02 2.73 -72.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.937 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds