Wall clock time and date at job start Tue Mar 31 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35354 * 117.00204 * 2 1 4 4 C 1.38986 * 126.40880 * 96.01524 * 3 2 1 5 5 C 1.46926 * 126.49855 * 359.97438 * 4 3 2 6 6 O 1.21667 * 119.99624 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00201 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00194 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.49839 * 324.93660 * 8 7 5 10 10 C 1.53046 * 109.49909 * 84.99739 * 8 7 5 11 11 C 1.53043 * 109.52255 * 58.62822 * 10 8 7 12 12 C 1.53163 * 109.32980 * 61.37561 * 11 10 8 13 13 N 1.46928 * 108.76426 * 305.35011 * 12 11 10 14 14 C 1.36937 * 120.63121 * 233.62892 * 13 12 11 15 15 H 1.08001 * 119.99784 * 144.98670 * 14 13 12 16 16 C 1.38807 * 120.00308 * 324.99114 * 14 13 12 17 17 N 1.31629 * 119.99830 * 346.05561 * 16 14 13 18 18 Si 1.86796 * 120.00340 * 166.05699 * 16 14 13 19 19 H 1.48492 * 109.47296 * 89.99784 * 18 16 14 20 20 H 1.48500 * 109.47162 * 210.00150 * 18 16 14 21 21 H 1.48502 * 109.46873 * 329.99659 * 18 16 14 22 22 C 1.46925 * 118.73828 * 53.61345 * 13 12 11 23 23 H 1.09003 * 109.59200 * 66.17354 * 22 13 12 24 24 C 1.52994 * 109.70570 * 186.52945 * 22 13 12 25 25 C 1.41466 * 107.00899 * 180.24419 * 4 3 2 26 26 N 1.30313 * 108.13477 * 359.55461 * 25 4 3 27 27 N 1.34662 * 126.39853 * 275.99307 * 3 2 1 28 28 C 1.46500 * 125.74683 * 0.05605 * 27 3 2 29 29 H 1.08997 * 109.47294 * 304.80471 * 1 2 3 30 30 H 1.09003 * 109.47074 * 64.80864 * 1 2 3 31 31 H 1.09002 * 109.47318 * 184.80237 * 1 2 3 32 32 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.46086 * 178.64166 * 10 8 7 34 34 H 1.09004 * 109.45904 * 298.61696 * 10 8 7 35 35 H 1.09007 * 109.49690 * 181.31319 * 11 10 8 36 36 H 1.08999 * 109.49781 * 301.40345 * 11 10 8 37 37 H 1.08995 * 109.58975 * 185.57182 * 12 11 10 38 38 H 1.08995 * 109.70720 * 65.20710 * 12 11 10 39 39 H 0.96997 * 119.99664 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47449 * 179.35930 * 24 22 13 41 41 H 1.08999 * 109.47402 * 299.36356 * 24 22 13 42 42 H 1.09002 * 109.47182 * 59.35695 * 24 22 13 43 43 H 1.07994 * 125.93132 * 179.74082 * 25 4 3 44 44 H 1.09005 * 109.46965 * 93.85607 * 28 27 3 45 45 H 1.08995 * 109.47069 * 213.85490 * 28 27 3 46 46 H 1.09001 * 109.47122 * 333.85682 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5225 1.8878 1.1124 5 6 2.4570 1.4364 2.5091 6 8 1.9431 0.3673 2.7794 7 7 2.9663 2.2067 3.4908 8 6 2.9006 1.7569 4.8834 9 1 1.9727 1.2082 5.0452 10 6 4.0923 0.8444 5.1823 11 6 5.3956 1.6040 4.9242 12 6 5.4692 2.8162 5.8574 13 7 4.2549 3.6241 5.6796 14 6 4.3416 4.9600 5.3917 15 1 3.6128 5.4206 4.7412 16 6 5.3662 5.7222 5.9357 17 7 6.0847 5.2452 6.9301 18 14 5.7254 7.4250 5.2568 19 1 4.9203 8.4318 5.9939 20 1 7.1696 7.7291 5.4215 21 1 5.3719 7.4677 3.8151 22 6 2.9458 2.9712 5.8163 23 1 2.8057 2.6455 6.8471 24 6 1.8370 3.9535 5.4337 25 6 3.0793 3.1016 0.6457 26 7 2.9503 3.1351 -0.6506 27 7 2.3054 1.9693 -1.0780 28 6 1.9708 1.6358 -2.4647 29 1 -0.3634 0.5865 0.8438 30 1 -0.3633 0.4374 -0.9299 31 1 -0.3634 -1.0241 0.0860 32 1 3.3764 3.0589 3.2752 33 1 4.0560 0.5295 6.2252 34 1 4.0491 -0.0326 4.5365 35 1 6.2438 0.9465 5.1148 36 1 5.4213 1.9406 3.8877 37 1 6.3458 3.4150 5.6103 38 1 5.5362 2.4800 6.8921 39 1 6.8004 5.7780 7.3105 40 1 0.8684 3.4619 5.5255 41 1 1.8708 4.8166 6.0985 42 1 1.9817 4.2818 4.4045 43 1 3.5351 3.8662 1.2572 44 1 1.0075 2.0763 -2.7220 45 1 2.7397 2.0301 -3.1289 46 1 1.9160 0.5527 -2.5748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994296805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:44 Heat of formation + Delta-G solvation = 31.511572 kcal Electronic energy + Delta-G solvation = -28885.445692 eV Core-core repulsion = 25006.303205 eV Total energy + Delta-G solvation = -3879.142487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58510 -39.31363 -38.23283 -37.28975 -33.81784 -33.50588 -32.30642 -31.56908 -30.11126 -29.30780 -27.53131 -26.91168 -26.09438 -24.93414 -23.02033 -21.83742 -21.09037 -20.70902 -20.05532 -18.60986 -18.29264 -16.79533 -16.54794 -16.36922 -15.78518 -15.20780 -14.87720 -14.70748 -14.66528 -14.51175 -13.93889 -13.72510 -13.64846 -13.37301 -13.05900 -12.94081 -12.86443 -12.71865 -12.47256 -12.11505 -11.79795 -11.41078 -11.20287 -11.14811 -10.96040 -10.67656 -10.57962 -10.49109 -10.36088 -10.09197 -9.96448 -9.63797 -9.55141 -9.40982 -9.23238 -8.72338 -8.48444 -8.28444 -6.56161 -5.79967 -3.30380 1.19499 2.00849 2.18805 3.34304 3.35662 3.43818 3.43915 3.75964 3.83883 4.33396 4.46753 4.80844 4.81257 4.90636 5.05024 5.08997 5.12246 5.27592 5.35569 5.37179 5.39682 5.61940 5.67668 5.79905 5.82809 5.94832 6.04429 6.19940 6.30304 6.32006 6.43368 6.49883 6.60021 6.74422 6.76482 6.85205 7.00994 7.05375 7.22066 7.23770 7.39337 7.41062 7.65595 7.80516 8.19416 8.47493 8.81096 9.20851 9.82380 10.43736 11.27788 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004131 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.309713 B = 6776.072013 C = 7807.257668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.295 6.295 3 C 0.312 3.688 4 C -0.286 4.286 5 C 0.589 3.411 6 O -0.555 6.555 7 N -0.696 5.696 8 C 0.137 3.863 9 H 0.075 0.925 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.175 3.825 13 N -0.584 5.584 14 C -0.259 4.259 15 H 0.066 0.934 16 C 0.013 3.987 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.159 3.841 23 H 0.038 0.962 24 C -0.134 4.134 25 C 0.095 3.905 26 N -0.280 5.280 27 N -0.375 5.375 28 C 0.095 3.905 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.406 0.594 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.199 0.801 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 -7.790 -14.638 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.139 3.861 4 C -0.301 4.301 5 C 0.375 3.625 6 O -0.435 6.435 7 N -0.347 5.347 8 C 0.031 3.969 9 H 0.093 0.907 10 C -0.159 4.159 11 C -0.179 4.179 12 C 0.050 3.950 13 N -0.308 5.308 14 C -0.389 4.389 15 H 0.084 0.916 16 C -0.188 4.188 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.052 3.948 23 H 0.056 0.944 24 C -0.191 4.191 25 C -0.092 4.092 26 N -0.103 5.103 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.242 0.758 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.215 0.785 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.431 -8.076 -15.489 19.851 hybrid contribution 0.276 0.949 0.251 1.020 sum -9.155 -7.126 -15.238 19.152 Atomic orbital electron populations 1.23100 0.77087 1.04445 1.00859 1.86031 1.21101 1.20388 1.92855 1.19317 0.95650 0.84604 0.86497 1.20189 1.17731 0.98387 0.93836 1.16966 0.78236 0.83955 0.83309 1.90748 1.46553 1.22416 1.83759 1.45742 1.59434 1.23118 1.06402 1.21503 0.97814 0.96709 0.80873 0.90694 1.21766 0.95836 0.97660 1.00663 1.22126 0.95546 0.98878 1.01355 1.20695 0.90659 0.89318 0.94357 1.44081 0.98522 1.05573 1.82644 1.19035 1.12631 0.84409 1.22799 0.91617 1.25229 1.00462 0.97381 0.95684 1.70020 1.22644 1.37567 1.23686 0.86403 0.77305 0.84738 0.78892 1.21431 1.21713 1.20310 1.20734 0.88106 0.91006 0.94929 0.94407 1.21755 0.95906 0.99637 1.01832 1.24088 0.96703 0.96571 0.91809 1.77241 1.18234 1.01204 1.13622 1.48951 1.45784 1.14773 1.07000 1.21942 1.02431 1.02292 0.77954 0.92179 0.93749 0.87706 0.75765 0.92043 0.93062 0.93586 0.92735 0.90590 0.96287 0.93659 0.94341 0.91839 0.92812 0.78454 0.90509 0.88720 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.13 101.05 1.12 1.51 16 2 O -0.30 -3.99 9.75 -25.01 -0.24 -4.23 16 3 C 0.31 4.46 6.98 -16.03 -0.11 4.35 16 4 C -0.29 -4.47 6.15 -104.87 -0.64 -5.12 16 5 C 0.59 10.38 7.76 -12.75 -0.10 10.28 16 6 O -0.55 -11.15 16.05 -2.03 -0.03 -11.18 16 7 N -0.70 -11.97 3.46 -54.92 -0.19 -12.16 16 8 C 0.14 2.48 2.32 -67.81 -0.16 2.32 16 9 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 10 C -0.12 -2.18 5.58 -26.69 -0.15 -2.33 16 11 C -0.14 -2.67 5.93 -26.62 -0.16 -2.83 16 12 C 0.18 3.97 5.25 -3.72 -0.02 3.95 16 13 N -0.58 -13.30 2.61 -164.80 -0.43 -13.73 16 14 C -0.26 -6.40 8.41 -15.06 -0.13 -6.53 16 15 H 0.07 1.57 6.42 -52.49 -0.34 1.23 16 16 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 17 N -0.90 -24.95 11.54 55.49 0.64 -24.31 16 18 Si 0.90 20.61 29.58 -169.99 -5.03 15.58 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.16 3.14 3.19 -67.60 -0.22 2.93 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.13 -2.42 7.78 37.15 0.29 -2.13 16 25 C 0.10 1.34 11.50 -16.97 -0.20 1.15 16 26 N -0.28 -3.92 12.48 30.88 0.39 -3.54 16 27 N -0.38 -4.64 3.99 -67.67 -0.27 -4.91 16 28 C 0.09 0.70 11.41 59.85 0.68 1.38 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.41 6.98 6.72 -40.82 -0.27 6.70 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 1.06 7.53 -51.93 -0.39 0.67 16 37 H 0.08 1.92 6.51 -51.93 -0.34 1.59 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.24 7.71 -51.93 -0.40 0.84 16 42 H 0.05 0.95 6.37 -51.93 -0.33 0.62 16 43 H 0.20 2.44 7.50 -52.49 -0.39 2.05 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -31.58 371.34 -6.50 -38.08 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.06 Total: 5.63 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 0.13 Total: 9.16 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.13 Total: -58.65 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.28 Total: -15.41 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.58 -6.50 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.590 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds