Wall clock time and date at job start Tue Mar 31 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35354 * 117.00204 * 2 1 4 4 C 1.38986 * 126.40880 * 96.01524 * 3 2 1 5 5 C 1.46926 * 126.49855 * 359.97438 * 4 3 2 6 6 O 1.21667 * 119.99624 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00201 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00194 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.49839 * 324.93660 * 8 7 5 10 10 C 1.53046 * 109.49909 * 84.99739 * 8 7 5 11 11 C 1.53043 * 109.52255 * 58.62822 * 10 8 7 12 12 C 1.53163 * 109.32980 * 61.37561 * 11 10 8 13 13 N 1.46928 * 108.76426 * 305.35011 * 12 11 10 14 14 C 1.36937 * 120.63121 * 233.62892 * 13 12 11 15 15 H 1.08001 * 119.99784 * 144.98670 * 14 13 12 16 16 C 1.38807 * 120.00308 * 324.99114 * 14 13 12 17 17 N 1.31629 * 119.99830 * 346.05561 * 16 14 13 18 18 Si 1.86796 * 120.00340 * 166.05699 * 16 14 13 19 19 H 1.48492 * 109.47296 * 89.99784 * 18 16 14 20 20 H 1.48500 * 109.47162 * 210.00150 * 18 16 14 21 21 H 1.48502 * 109.46873 * 329.99659 * 18 16 14 22 22 C 1.46925 * 118.73828 * 53.61345 * 13 12 11 23 23 H 1.09003 * 109.59200 * 66.17354 * 22 13 12 24 24 C 1.52994 * 109.70570 * 186.52945 * 22 13 12 25 25 C 1.41466 * 107.00899 * 180.24419 * 4 3 2 26 26 N 1.30313 * 108.13477 * 359.55461 * 25 4 3 27 27 N 1.34662 * 126.39853 * 275.99307 * 3 2 1 28 28 C 1.46500 * 125.74683 * 0.05605 * 27 3 2 29 29 H 1.08997 * 109.47294 * 304.80471 * 1 2 3 30 30 H 1.09003 * 109.47074 * 64.80864 * 1 2 3 31 31 H 1.09002 * 109.47318 * 184.80237 * 1 2 3 32 32 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.46086 * 178.64166 * 10 8 7 34 34 H 1.09004 * 109.45904 * 298.61696 * 10 8 7 35 35 H 1.09007 * 109.49690 * 181.31319 * 11 10 8 36 36 H 1.08999 * 109.49781 * 301.40345 * 11 10 8 37 37 H 1.08995 * 109.58975 * 185.57182 * 12 11 10 38 38 H 1.08995 * 109.70720 * 65.20710 * 12 11 10 39 39 H 0.96997 * 119.99664 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47449 * 179.35930 * 24 22 13 41 41 H 1.08999 * 109.47402 * 299.36356 * 24 22 13 42 42 H 1.09002 * 109.47182 * 59.35695 * 24 22 13 43 43 H 1.07994 * 125.93132 * 179.74082 * 25 4 3 44 44 H 1.09005 * 109.46965 * 93.85607 * 28 27 3 45 45 H 1.08995 * 109.47069 * 213.85490 * 28 27 3 46 46 H 1.09001 * 109.47122 * 333.85682 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5225 1.8878 1.1124 5 6 2.4570 1.4364 2.5091 6 8 1.9431 0.3673 2.7794 7 7 2.9663 2.2067 3.4908 8 6 2.9006 1.7569 4.8834 9 1 1.9727 1.2082 5.0452 10 6 4.0923 0.8444 5.1823 11 6 5.3956 1.6040 4.9242 12 6 5.4692 2.8162 5.8574 13 7 4.2549 3.6241 5.6796 14 6 4.3416 4.9600 5.3917 15 1 3.6128 5.4206 4.7412 16 6 5.3662 5.7222 5.9357 17 7 6.0847 5.2452 6.9301 18 14 5.7254 7.4250 5.2568 19 1 4.9203 8.4318 5.9939 20 1 7.1696 7.7291 5.4215 21 1 5.3719 7.4677 3.8151 22 6 2.9458 2.9712 5.8163 23 1 2.8057 2.6455 6.8471 24 6 1.8370 3.9535 5.4337 25 6 3.0793 3.1016 0.6457 26 7 2.9503 3.1351 -0.6506 27 7 2.3054 1.9693 -1.0780 28 6 1.9708 1.6358 -2.4647 29 1 -0.3634 0.5865 0.8438 30 1 -0.3633 0.4374 -0.9299 31 1 -0.3634 -1.0241 0.0860 32 1 3.3764 3.0589 3.2752 33 1 4.0560 0.5295 6.2252 34 1 4.0491 -0.0326 4.5365 35 1 6.2438 0.9465 5.1148 36 1 5.4213 1.9406 3.8877 37 1 6.3458 3.4150 5.6103 38 1 5.5362 2.4800 6.8921 39 1 6.8004 5.7780 7.3105 40 1 0.8684 3.4619 5.5255 41 1 1.8708 4.8166 6.0985 42 1 1.9817 4.2818 4.4045 43 1 3.5351 3.8662 1.2572 44 1 1.0075 2.0763 -2.7220 45 1 2.7397 2.0301 -3.1289 46 1 1.9160 0.5527 -2.5748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994296805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:43 Heat of formation + Delta-G solvation = 10.922260 kcal Electronic energy + Delta-G solvation = -28886.338512 eV Core-core repulsion = 25006.303205 eV Total energy + Delta-G solvation = -3880.035307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61398 -40.77274 -39.19211 -38.83736 -35.47571 -34.49700 -33.87061 -33.24267 -31.44288 -30.67551 -28.51449 -27.78801 -27.53875 -26.73482 -24.34269 -23.35900 -22.30714 -22.14033 -21.32266 -20.16738 -19.37226 -18.18229 -17.93600 -17.48727 -17.01554 -16.77162 -16.18147 -16.01385 -15.76689 -15.64587 -15.59131 -15.10915 -14.85723 -14.67343 -14.55287 -14.38964 -14.15418 -13.58969 -13.55858 -13.48709 -12.89587 -12.88131 -12.81024 -12.67287 -12.40524 -12.39108 -12.30755 -12.12890 -11.89146 -11.61079 -11.33423 -11.29560 -10.95508 -10.79384 -10.49203 -10.45230 -9.96123 -9.58976 -8.47408 -7.76898 -5.28838 0.16940 1.07503 1.10925 1.52776 1.55960 1.62953 2.32721 2.49642 2.58201 2.63182 3.40144 3.41559 3.65737 3.95909 4.03341 4.08829 4.15213 4.22091 4.26956 4.31775 4.35083 4.38391 4.45825 4.58927 4.62510 4.66227 4.68461 4.73913 4.86367 5.02054 5.04531 5.07833 5.11110 5.19733 5.29426 5.33887 5.41835 5.54073 5.58322 5.72656 5.81924 5.84322 6.28403 6.39109 6.52597 6.82267 7.25924 7.44924 7.93895 8.51343 9.29432 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004131 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.309713 B = 6776.072013 C = 7807.257668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.316 3.684 4 C -0.317 4.317 5 C 0.592 3.408 6 O -0.584 6.584 7 N -0.693 5.693 8 C 0.147 3.853 9 H 0.079 0.921 10 C -0.115 4.115 11 C -0.125 4.125 12 C 0.185 3.815 13 N -0.594 5.594 14 C -0.248 4.248 15 H 0.078 0.922 16 C -0.042 4.042 17 N -0.934 5.934 18 Si 0.955 3.045 19 H -0.290 1.290 20 H -0.303 1.303 21 H -0.262 1.262 22 C 0.158 3.842 23 H 0.029 0.971 24 C -0.126 4.126 25 C 0.096 3.904 26 N -0.293 5.293 27 N -0.366 5.366 28 C 0.082 3.918 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.407 0.593 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.045 0.955 38 H -0.005 1.005 39 H 0.246 0.754 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.209 0.791 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -8.164 -17.119 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.141 3.859 4 C -0.333 4.333 5 C 0.381 3.619 6 O -0.466 6.466 7 N -0.343 5.343 8 C 0.040 3.960 9 H 0.097 0.903 10 C -0.153 4.153 11 C -0.165 4.165 12 C 0.059 3.941 13 N -0.318 5.318 14 C -0.378 4.378 15 H 0.095 0.905 16 C -0.238 4.238 17 N -0.580 5.580 18 Si 0.784 3.216 19 H -0.217 1.217 20 H -0.230 1.230 21 H -0.187 1.187 22 C 0.051 3.949 23 H 0.047 0.953 24 C -0.183 4.183 25 C -0.090 4.090 26 N -0.116 5.116 27 N -0.155 5.155 28 C -0.057 4.057 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.243 0.757 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.014 0.986 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.225 0.775 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.951 -8.446 -18.022 22.716 hybrid contribution 0.640 0.971 0.945 1.498 sum -10.311 -7.475 -17.077 21.303 Atomic orbital electron populations 1.23346 0.75006 1.05817 1.01723 1.85997 1.23070 1.20031 1.92969 1.19376 0.95068 0.84612 0.86817 1.20098 1.20160 0.99803 0.93223 1.17184 0.77349 0.83376 0.84034 1.90722 1.47920 1.23605 1.84318 1.45654 1.59486 1.23123 1.05991 1.21293 0.97930 0.95655 0.81089 0.90303 1.21714 0.95134 0.97459 1.01043 1.21938 0.96861 0.97561 1.00096 1.20466 0.89778 0.90076 0.93798 1.44256 0.99662 1.05324 1.82587 1.19390 1.11833 0.85106 1.21515 0.90464 1.25891 1.01093 1.00530 0.96312 1.70173 1.23515 1.38749 1.25557 0.85470 0.76113 0.81028 0.78977 1.21742 1.22967 1.18684 1.20835 0.87106 0.91910 0.95006 0.95325 1.21672 0.96428 0.98716 1.01492 1.24215 0.96481 0.96325 0.91999 1.77200 1.18725 1.02186 1.13470 1.49280 1.44339 1.13680 1.08241 1.22397 1.04017 1.03762 0.75499 0.93800 0.90806 0.85721 0.75686 0.91523 0.92871 0.92186 0.92850 0.93602 0.98644 0.94530 0.91944 0.93488 0.92386 0.77474 0.88194 0.87517 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 11.13 113.37 1.26 1.85 16 2 O -0.31 -7.82 9.75 -79.51 -0.78 -8.59 16 3 C 0.32 8.47 6.98 84.44 0.59 9.06 16 4 C -0.32 -9.54 6.15 -20.03 -0.12 -9.67 16 5 C 0.59 20.29 7.76 86.52 0.67 20.96 16 6 O -0.58 -22.94 16.05 2.69 0.04 -22.89 16 7 N -0.69 -23.06 3.46 -445.89 -1.54 -24.61 16 8 C 0.15 5.15 2.32 45.07 0.10 5.25 16 9 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 10 C -0.11 -4.05 5.58 30.62 0.17 -3.88 16 11 C -0.13 -4.74 5.93 30.66 0.18 -4.56 16 12 C 0.18 8.52 5.25 86.35 0.45 8.97 16 13 N -0.59 -27.09 2.61 -675.30 -1.76 -28.86 16 14 C -0.25 -12.21 8.41 84.03 0.71 -11.50 16 15 H 0.08 3.59 6.42 -2.91 -0.02 3.57 16 16 C -0.04 -2.22 4.94 84.86 0.42 -1.80 16 17 N -0.93 -53.44 11.54 21.65 0.25 -53.19 16 18 Si 0.96 42.65 29.58 68.60 2.03 44.68 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.16 6.12 3.19 44.97 0.14 6.27 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 C -0.13 -4.37 7.78 71.98 0.56 -3.81 16 25 C 0.10 2.59 11.50 85.71 0.99 3.57 16 26 N -0.29 -7.63 12.48 -56.23 -0.70 -8.34 16 27 N -0.37 -8.17 3.99 -479.80 -1.91 -10.09 16 28 C 0.08 0.94 11.41 127.77 1.46 2.40 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.41 13.52 6.72 -92.71 -0.62 12.90 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.05 2.03 7.53 -2.39 -0.02 2.01 16 37 H 0.05 2.39 6.51 -2.39 -0.02 2.37 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.25 13.85 8.31 -92.71 -0.77 13.07 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.78 7.71 -2.39 -0.02 1.76 16 42 H 0.06 1.95 6.37 -2.39 -0.02 1.94 16 43 H 0.21 4.86 7.50 -2.91 -0.02 4.84 16 44 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.90 8.04 -2.39 -0.02 0.88 16 Total: -1.00 -68.24 371.34 3.57 -64.67 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.37 Total: 24.10 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 7.58 Total: 23.12 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.68 Total: -125.08 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.73 Total: -31.49 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.24 3.57 -64.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.589 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds