Wall clock time and date at job start Tue Mar 31 2020 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35357 * 116.99809 * 2 1 4 4 C 1.38998 * 126.40468 * 94.41473 * 3 2 1 5 5 C 1.46923 * 126.49826 * 359.95976 * 4 3 2 6 6 O 1.21666 * 119.99973 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00110 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99735 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.49781 * 325.06106 * 8 7 5 10 10 C 1.53044 * 109.50050 * 85.16253 * 8 7 5 11 11 C 1.53034 * 109.53893 * 181.31242 * 10 8 7 12 12 C 1.53190 * 109.31689 * 298.63354 * 11 10 8 13 13 N 1.46934 * 108.77554 * 54.63212 * 12 11 10 14 14 C 1.36927 * 120.62977 * 126.41316 * 13 12 11 15 15 H 1.08008 * 120.00206 * 210.46893 * 14 13 12 16 16 C 1.38812 * 120.00366 * 30.46671 * 14 13 12 17 17 N 1.31622 * 119.99372 * 12.22851 * 16 14 13 18 18 Si 1.86794 * 120.00520 * 192.22800 * 16 14 13 19 19 H 1.48505 * 109.47100 * 60.00140 * 18 16 14 20 20 H 1.48503 * 109.47455 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47269 * 300.00093 * 18 16 14 22 22 C 1.46922 * 118.73694 * 306.39727 * 13 12 11 23 23 H 1.08999 * 109.70771 * 293.74821 * 22 13 12 24 24 C 1.53004 * 109.58445 * 173.39126 * 22 13 12 25 25 C 1.41464 * 107.00479 * 179.85038 * 4 3 2 26 26 N 1.30321 * 108.13635 * 0.41317 * 25 4 3 27 27 N 1.34652 * 126.40472 * 274.72080 * 3 2 1 28 28 C 1.46500 * 125.74493 * 0.02562 * 27 3 2 29 29 H 1.09003 * 109.47071 * 295.17561 * 1 2 3 30 30 H 1.09000 * 109.47129 * 55.17680 * 1 2 3 31 31 H 1.09003 * 109.46746 * 175.17613 * 1 2 3 32 32 H 0.96999 * 119.99985 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.45831 * 301.33675 * 10 8 7 34 34 H 1.09003 * 109.45764 * 61.29072 * 10 8 7 35 35 H 1.08999 * 109.49580 * 178.68197 * 11 10 8 36 36 H 1.09006 * 109.52546 * 58.59982 * 11 10 8 37 37 H 1.09004 * 109.58690 * 294.85409 * 12 11 10 38 38 H 1.08993 * 109.58991 * 174.41891 * 12 11 10 39 39 H 0.97007 * 119.99902 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47321 * 300.70677 * 24 22 13 41 41 H 1.09001 * 109.47272 * 60.71300 * 24 22 13 42 42 H 1.08997 * 109.47000 * 180.70942 * 24 22 13 43 43 H 1.08001 * 125.92754 * 180.12494 * 25 4 3 44 44 H 1.08995 * 109.47264 * 94.63918 * 28 27 3 45 45 H 1.09003 * 109.47224 * 214.64596 * 28 27 3 46 46 H 1.09003 * 109.47193 * 334.64031 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.4946 1.9020 1.1154 5 6 2.3941 1.4684 2.5156 6 8 1.8741 0.4024 2.7865 7 7 2.8780 2.2516 3.5000 8 6 2.7782 1.8190 4.8960 9 1 1.8484 1.2690 5.0409 10 6 3.9654 0.9153 5.2369 11 6 3.8448 0.4364 6.6854 12 6 3.8739 1.6472 7.6235 13 7 2.8259 2.5906 7.2106 14 6 1.8957 3.0377 8.1104 15 1 0.9016 3.2961 7.7763 16 6 2.2301 3.1587 9.4522 17 7 3.4896 3.0793 9.8262 18 14 0.8928 3.4341 10.7270 19 1 -0.0619 2.2970 10.6965 20 1 1.5068 3.5294 12.0759 21 1 0.1706 4.6952 10.4223 22 6 2.7953 3.0455 5.8139 23 1 3.6797 3.6468 5.6037 24 6 1.5371 3.8826 5.5745 25 6 3.0713 3.1057 0.6466 26 7 2.9627 3.1288 -0.6518 27 7 2.3267 1.9586 -1.0801 28 6 2.0201 1.6108 -2.4698 29 1 -0.3633 0.4372 0.9301 30 1 -0.3633 0.5868 -0.8436 31 1 -0.3633 -1.0241 -0.0864 32 1 3.2929 3.1014 3.2840 33 1 3.9698 0.0541 4.5688 34 1 4.8936 1.4738 5.1152 35 1 4.6781 -0.2258 6.9202 36 1 2.9054 -0.1012 6.8143 37 1 4.8476 2.1333 7.5626 38 1 3.6892 1.3210 8.6469 39 1 3.7233 3.1635 10.7639 40 1 0.6540 3.2811 5.7899 41 1 1.5511 4.7546 6.2283 42 1 1.5099 4.2085 4.5348 43 1 3.5191 3.8744 1.2590 44 1 1.0688 2.0597 -2.7553 45 1 2.8093 1.9867 -3.1210 46 1 1.9543 0.5271 -2.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994296806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:46 Heat of formation + Delta-G solvation = 8.542051 kcal Electronic energy + Delta-G solvation = -28198.975980 eV Core-core repulsion = 24318.837460 eV Total energy + Delta-G solvation = -3880.138520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62155 -40.69182 -39.21060 -38.96665 -35.78823 -34.53698 -34.06366 -33.32300 -31.38907 -30.58812 -28.56112 -27.80812 -27.52853 -26.78653 -24.45372 -23.16867 -22.32923 -21.99026 -21.26601 -20.94762 -19.33014 -18.27384 -17.84496 -17.48178 -17.27871 -16.83065 -16.29805 -15.87094 -15.77973 -15.61583 -15.54727 -15.34717 -14.93397 -14.74256 -14.59066 -14.41771 -14.21739 -13.58683 -13.57517 -13.29704 -13.18023 -12.91324 -12.76209 -12.66767 -12.48905 -12.42521 -12.33651 -11.98666 -11.77539 -11.72091 -11.56804 -11.33406 -11.13555 -10.81790 -10.49936 -10.48497 -10.03296 -9.64542 -8.58946 -7.81365 -5.29651 0.14052 1.08619 1.09869 1.49192 1.51565 1.57403 2.24831 2.36543 2.58121 2.62161 3.34418 3.38995 3.69328 3.89929 3.98929 4.03128 4.10541 4.16107 4.26833 4.31860 4.34714 4.37100 4.42475 4.54449 4.61074 4.65577 4.67511 4.68270 4.84474 4.94264 4.98761 5.05924 5.09726 5.18316 5.28743 5.33993 5.37420 5.50573 5.56113 5.67935 5.73906 5.82236 6.26116 6.39272 6.46693 6.73854 7.20653 7.40793 7.90727 8.42701 9.25103 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.002911 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.456624 B = 9614.979853 C = 9655.338568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.318 4.318 5 C 0.593 3.407 6 O -0.584 6.584 7 N -0.702 5.702 8 C 0.152 3.848 9 H 0.056 0.944 10 C -0.109 4.109 11 C -0.130 4.130 12 C 0.177 3.823 13 N -0.601 5.601 14 C -0.253 4.253 15 H 0.071 0.929 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.962 3.038 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.274 1.274 22 C 0.165 3.835 23 H 0.037 0.963 24 C -0.127 4.127 25 C 0.102 3.898 26 N -0.292 5.292 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.411 0.589 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.004 0.996 38 H 0.056 0.944 39 H 0.248 0.752 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.227 0.773 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -1.402 -25.353 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.138 3.862 4 C -0.334 4.334 5 C 0.382 3.618 6 O -0.465 6.465 7 N -0.353 5.353 8 C 0.045 3.955 9 H 0.074 0.926 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.051 3.949 13 N -0.325 5.325 14 C -0.383 4.383 15 H 0.089 0.911 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.791 3.209 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.058 3.942 23 H 0.054 0.946 24 C -0.185 4.185 25 C -0.085 4.085 26 N -0.115 5.115 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.247 0.753 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.243 0.757 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.974 -1.745 -26.185 26.411 hybrid contribution -0.566 -0.065 1.809 1.897 sum -3.540 -1.810 -24.376 24.698 Atomic orbital electron populations 1.23319 0.75078 1.05855 1.01517 1.85984 1.22973 1.20441 1.93002 1.19481 0.95013 0.84642 0.87057 1.20057 1.20497 1.00454 0.92419 1.17271 0.77092 0.83234 0.84236 1.90771 1.46881 1.24352 1.84544 1.45600 1.60982 1.23370 1.05331 1.21256 0.97955 0.96461 0.79835 0.92566 1.21686 0.98288 0.98819 0.96016 1.22028 1.00704 0.98753 0.95446 1.20639 0.89549 0.87897 0.96809 1.44252 1.33288 1.49873 1.05046 1.19411 0.92216 1.37990 0.88667 0.91104 1.25800 0.97468 1.01018 1.00090 1.70141 1.16793 1.55608 1.15541 0.85426 0.78934 0.78276 0.78304 1.20866 1.22175 1.19997 1.20724 0.97238 0.91886 0.84307 0.94591 1.21729 0.96603 0.99221 1.00931 1.24399 0.96049 0.96165 0.91868 1.77198 1.18945 1.01613 1.13720 1.49258 1.44667 1.13725 1.07937 1.22383 1.04367 1.03506 0.75438 0.94045 0.90952 0.85646 0.75254 0.93019 0.91506 0.91123 0.93884 0.97759 0.92578 0.94252 0.94245 0.93215 0.90550 0.75704 0.88314 0.87321 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.13 113.37 1.26 1.88 16 2 O -0.31 -7.62 9.74 -79.55 -0.77 -8.39 16 3 C 0.31 7.57 6.98 84.44 0.59 8.16 16 4 C -0.32 -8.21 6.15 -20.03 -0.12 -8.34 16 5 C 0.59 18.77 7.76 86.52 0.67 19.44 16 6 O -0.58 -23.30 16.04 2.69 0.04 -23.26 16 7 N -0.70 -20.07 4.56 -445.90 -2.04 -22.11 16 8 C 0.15 5.48 2.00 45.07 0.09 5.57 16 9 H 0.06 2.40 7.57 -2.39 -0.02 2.39 16 10 C -0.11 -3.96 5.46 30.62 0.17 -3.79 16 11 C -0.13 -5.23 6.08 30.67 0.19 -5.04 16 12 C 0.18 8.60 5.26 86.36 0.45 9.05 16 13 N -0.60 -29.65 2.99 -675.21 -2.02 -31.66 16 14 C -0.25 -13.59 8.58 84.03 0.72 -12.87 16 15 H 0.07 3.71 6.23 -2.91 -0.02 3.69 16 16 C -0.05 -2.69 5.02 84.86 0.43 -2.26 16 17 N -0.93 -54.77 11.07 21.65 0.24 -54.53 16 18 Si 0.96 44.92 29.57 68.60 2.03 46.94 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.17 6.52 3.03 44.98 0.14 6.65 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 24 C -0.13 -4.57 7.85 71.98 0.56 -4.00 16 25 C 0.10 2.00 11.50 85.71 0.99 2.98 16 26 N -0.29 -6.01 12.48 -56.22 -0.70 -6.72 16 27 N -0.37 -6.98 3.99 -479.80 -1.91 -8.89 16 28 C 0.08 0.75 11.41 127.77 1.46 2.21 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 8.87 7.55 -92.71 -0.70 8.17 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 38 H 0.06 3.10 6.08 -2.39 -0.01 3.09 16 39 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 40 H 0.04 1.51 7.39 -2.39 -0.02 1.50 16 41 H 0.05 1.91 7.67 -2.39 -0.02 1.89 16 42 H 0.08 2.14 7.78 -2.39 -0.02 2.12 16 43 H 0.23 2.64 7.50 -2.91 -0.02 2.61 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 0.71 8.02 -2.39 -0.02 0.69 16 Total: -1.00 -74.87 373.66 2.75 -72.12 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.29 Total: 16.87 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.59 Total: 19.63 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -6.43 Total: -123.91 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.73 Total: -31.65 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.87 2.75 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.660 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds