Wall clock time and date at job start Tue Mar 31 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35345 * 117.00346 * 2 1 4 4 C 1.38989 * 126.40539 * 94.69677 * 3 2 1 5 5 C 1.46926 * 126.49950 * 0.02562 * 4 3 2 6 6 O 1.21668 * 119.99694 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00163 * 179.71906 * 5 4 3 8 8 C 1.46496 * 119.99771 * 180.27376 * 7 5 4 9 9 H 1.09002 * 109.49954 * 34.94655 * 8 7 5 10 10 C 1.53041 * 109.50337 * 274.84246 * 8 7 5 11 11 C 1.53033 * 109.53727 * 301.41563 * 10 8 7 12 12 C 1.53186 * 109.31404 * 298.63331 * 11 10 8 13 13 N 1.46924 * 108.77928 * 54.63431 * 12 11 10 14 14 C 1.36942 * 120.63262 * 126.40880 * 13 12 11 15 15 H 1.07989 * 120.00054 * 210.46026 * 14 13 12 16 16 C 1.38815 * 119.99401 * 30.46554 * 14 13 12 17 17 N 1.31621 * 120.00167 * 12.21787 * 16 14 13 18 18 Si 1.86802 * 119.99588 * 192.21112 * 16 14 13 19 19 H 1.48508 * 109.46847 * 60.00257 * 18 16 14 20 20 H 1.48500 * 109.46773 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47445 * 300.00373 * 18 16 14 22 22 C 1.46925 * 118.73887 * 306.39575 * 13 12 11 23 23 H 1.09007 * 109.70096 * 293.75106 * 22 13 12 24 24 C 1.52993 * 109.58824 * 173.39376 * 22 13 12 25 25 C 1.41466 * 107.00773 * 180.28779 * 4 3 2 26 26 N 1.30316 * 108.13409 * 359.55400 * 25 4 3 27 27 N 1.34660 * 126.40637 * 274.72600 * 3 2 1 28 28 C 1.46503 * 125.74232 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47527 * 175.17317 * 1 2 3 30 30 H 1.09000 * 109.47328 * 295.17980 * 1 2 3 31 31 H 1.09011 * 109.47029 * 55.17200 * 1 2 3 32 32 H 0.96999 * 120.00243 * 0.28569 * 7 5 4 33 33 H 1.09007 * 109.45545 * 61.43540 * 10 8 7 34 34 H 1.09002 * 109.46333 * 181.39138 * 10 8 7 35 35 H 1.08999 * 109.49807 * 178.67945 * 11 10 8 36 36 H 1.09002 * 109.52843 * 58.60107 * 11 10 8 37 37 H 1.08994 * 109.58757 * 294.84583 * 12 11 10 38 38 H 1.09005 * 109.58963 * 174.42286 * 12 11 10 39 39 H 0.97004 * 119.99352 * 180.02562 * 17 16 14 40 40 H 1.09008 * 109.47184 * 300.70711 * 24 22 13 41 41 H 1.08999 * 109.47334 * 60.71060 * 24 22 13 42 42 H 1.09005 * 109.47245 * 180.71382 * 24 22 13 43 43 H 1.08001 * 125.93294 * 179.74409 * 25 4 3 44 44 H 1.09001 * 109.46950 * 94.64639 * 28 27 3 45 45 H 1.08999 * 109.47236 * 214.64267 * 28 27 3 46 46 H 1.09005 * 109.46716 * 334.64467 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4997 1.8993 1.1149 5 6 2.4065 1.4620 2.5145 6 8 1.8887 0.3948 2.7851 7 7 2.9001 2.2402 3.4979 8 6 2.8126 1.8014 4.8929 9 1 2.9277 0.7186 4.9416 10 6 1.4509 2.1973 5.4685 11 6 1.2752 3.7144 5.3700 12 6 2.3673 4.4054 6.1925 13 7 3.6782 3.9193 5.7412 14 6 4.6544 4.7996 5.3571 15 1 5.3751 4.5126 4.6057 16 6 4.7175 6.0607 5.9336 17 7 4.0051 6.3300 7.0071 18 14 5.8138 7.3756 5.1860 19 1 5.3862 7.6408 3.7888 20 1 5.7039 8.6236 5.9833 21 1 7.2229 6.9074 5.1919 22 6 3.9221 2.4708 5.7100 23 1 3.9171 2.0754 6.7258 24 6 5.2781 2.1928 5.0582 25 6 3.0652 3.1087 0.6472 26 7 2.9624 3.1289 -0.6518 27 7 2.3269 1.9585 -1.0801 28 6 2.0210 1.6103 -2.4699 29 1 -0.3634 -1.0240 -0.0865 30 1 -0.3634 0.4372 0.9300 31 1 -0.3634 0.5870 -0.8437 32 1 3.3132 3.0909 3.2821 33 1 0.6604 1.7027 4.9041 34 1 1.3959 1.8925 6.5136 35 1 0.2958 3.9931 5.7586 36 1 1.3544 4.0234 4.3277 37 1 2.2338 4.1697 7.2482 38 1 2.3074 5.4840 6.0464 39 1 4.0490 7.2115 7.4097 40 1 5.2828 2.5933 4.0444 41 1 6.0660 2.6698 5.6410 42 1 5.4514 1.1171 5.0246 43 1 3.5083 3.8798 1.2599 44 1 1.0696 2.0587 -2.7559 45 1 2.8102 1.9866 -3.1208 46 1 1.9558 0.5266 -2.5669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994296807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:50 Heat of formation + Delta-G solvation = 33.577137 kcal Electronic energy + Delta-G solvation = -28919.113903 eV Core-core repulsion = 25040.060986 eV Total energy + Delta-G solvation = -3879.052918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58221 -39.31786 -38.22527 -37.29948 -33.83688 -33.50871 -32.29873 -31.59696 -30.09583 -29.27233 -27.52100 -26.90856 -26.09671 -24.96657 -23.01390 -21.82234 -21.08137 -20.71133 -20.05388 -18.60870 -18.28764 -16.79710 -16.53352 -16.37264 -15.78620 -15.24216 -14.86609 -14.70623 -14.63769 -14.53758 -13.92118 -13.74749 -13.63277 -13.35494 -13.06246 -12.93129 -12.86973 -12.70683 -12.48229 -12.11648 -11.79044 -11.38997 -11.21105 -11.16965 -10.92070 -10.67264 -10.57956 -10.48181 -10.34918 -10.07585 -9.96030 -9.60697 -9.54874 -9.41145 -9.26541 -8.72053 -8.47911 -8.28193 -6.62386 -5.78327 -3.25824 1.19459 2.01088 2.19013 3.35520 3.37243 3.43224 3.44107 3.77744 3.82130 4.33874 4.47189 4.81055 4.81968 4.90627 5.07062 5.09832 5.12780 5.28085 5.35863 5.37565 5.42497 5.61777 5.66644 5.79762 5.82874 5.95450 6.03636 6.19109 6.29320 6.32310 6.43590 6.49669 6.59567 6.73841 6.75786 6.84885 7.00169 7.04256 7.21808 7.23779 7.41221 7.43866 7.72039 7.79935 8.19397 8.45952 8.81085 9.21516 9.83796 10.41611 11.29180 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.004191 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.572273 B = 6679.499670 C = 7748.140974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.312 3.688 4 C -0.286 4.286 5 C 0.589 3.411 6 O -0.555 6.555 7 N -0.696 5.696 8 C 0.137 3.863 9 H 0.076 0.924 10 C -0.120 4.120 11 C -0.140 4.140 12 C 0.172 3.828 13 N -0.586 5.586 14 C -0.255 4.255 15 H 0.070 0.930 16 C 0.007 3.993 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.283 1.283 22 C 0.159 3.841 23 H 0.039 0.961 24 C -0.135 4.135 25 C 0.095 3.905 26 N -0.280 5.280 27 N -0.375 5.375 28 C 0.095 3.905 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.406 0.594 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.088 0.912 39 H 0.254 0.746 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.199 0.801 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 -9.333 -14.723 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.139 3.861 4 C -0.302 4.302 5 C 0.375 3.625 6 O -0.435 6.435 7 N -0.347 5.347 8 C 0.031 3.969 9 H 0.094 0.906 10 C -0.159 4.159 11 C -0.180 4.180 12 C 0.046 3.954 13 N -0.310 5.310 14 C -0.384 4.384 15 H 0.087 0.913 16 C -0.192 4.192 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.209 1.209 22 C 0.052 3.948 23 H 0.056 0.944 24 C -0.193 4.193 25 C -0.092 4.092 26 N -0.103 5.103 27 N -0.165 5.165 28 C -0.046 4.046 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.243 0.757 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.215 0.785 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.568 -9.554 -15.570 19.412 hybrid contribution 0.354 0.872 0.223 0.967 sum -6.214 -8.681 -15.347 18.695 Atomic orbital electron populations 1.23108 0.77031 1.03918 1.01462 1.86011 1.21135 1.20410 1.92914 1.19296 0.95599 0.84704 0.86462 1.20202 1.17831 0.98394 0.93765 1.16967 0.78279 0.83892 0.83316 1.90747 1.45882 1.22865 1.84007 1.45740 1.59732 1.23127 1.06083 1.21501 0.96609 0.98399 0.80419 0.90622 1.21766 0.96697 0.97344 1.00078 1.22145 0.99534 0.94924 1.01350 1.20812 0.81896 0.99210 0.93473 1.44138 1.10781 0.98783 1.77268 1.19110 1.09080 0.94185 1.16070 0.91265 1.25131 0.98871 0.99531 0.95674 1.69987 1.43373 1.21343 1.19866 0.86421 0.80620 0.81398 0.78577 1.20943 1.21782 1.20940 1.20727 0.91733 0.86837 0.95498 0.94376 1.21781 0.97620 0.98816 1.01085 1.24091 0.96665 0.96639 0.91781 1.77239 1.18634 1.00837 1.13588 1.48941 1.45984 1.14751 1.06778 1.21941 1.02746 1.02131 0.77797 0.87808 0.91958 0.93758 0.75746 0.93233 0.92059 0.93649 0.92828 0.96529 0.89392 0.93625 0.92729 0.91875 0.94218 0.78451 0.90500 0.88752 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.13 101.05 1.12 1.51 16 2 O -0.30 -4.01 9.74 -24.98 -0.24 -4.25 16 3 C 0.31 4.47 6.98 -16.03 -0.11 4.36 16 4 C -0.29 -4.49 6.15 -104.87 -0.64 -5.14 16 5 C 0.59 10.40 7.76 -12.74 -0.10 10.30 16 6 O -0.56 -11.16 16.04 -2.04 -0.03 -11.19 16 7 N -0.70 -12.00 3.46 -54.92 -0.19 -12.19 16 8 C 0.14 2.48 2.33 -67.81 -0.16 2.32 16 9 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 10 C -0.12 -2.15 5.58 -26.69 -0.15 -2.30 16 11 C -0.14 -2.66 5.93 -26.62 -0.16 -2.82 16 12 C 0.17 3.89 5.26 -3.71 -0.02 3.87 16 13 N -0.59 -13.32 2.64 -164.78 -0.44 -13.76 16 14 C -0.25 -6.30 8.58 -15.06 -0.13 -6.43 16 15 H 0.07 1.65 6.23 -52.49 -0.33 1.32 16 16 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 17 N -0.90 -24.96 11.07 55.49 0.61 -24.35 16 18 Si 0.90 20.66 29.57 -169.99 -5.03 15.63 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.16 3.14 3.20 -67.60 -0.22 2.93 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.14 -2.47 7.73 37.15 0.29 -2.18 16 25 C 0.10 1.35 11.50 -16.97 -0.20 1.15 16 26 N -0.28 -3.94 12.47 30.88 0.39 -3.55 16 27 N -0.37 -4.65 3.99 -67.67 -0.27 -4.92 16 28 C 0.09 0.70 11.41 59.85 0.68 1.39 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.41 7.01 6.72 -40.82 -0.27 6.73 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 2.24 6.08 -51.93 -0.32 1.92 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.05 0.98 6.37 -51.92 -0.33 0.65 16 41 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.20 2.45 7.50 -52.49 -0.39 2.06 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.54 8.02 -51.93 -0.42 0.12 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -31.37 370.44 -6.52 -37.88 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.03 Total: 6.05 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 0.13 Total: 9.06 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.10 Total: -58.77 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.28 Total: -15.44 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.37 -6.52 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.457 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds