Wall clock time and date at job start Tue Mar 31 2020 14:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35345 * 117.00346 * 2 1 4 4 C 1.38989 * 126.40539 * 94.69677 * 3 2 1 5 5 C 1.46926 * 126.49950 * 0.02562 * 4 3 2 6 6 O 1.21668 * 119.99694 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00163 * 179.71906 * 5 4 3 8 8 C 1.46496 * 119.99771 * 180.27376 * 7 5 4 9 9 H 1.09002 * 109.49954 * 34.94655 * 8 7 5 10 10 C 1.53041 * 109.50337 * 274.84246 * 8 7 5 11 11 C 1.53033 * 109.53727 * 301.41563 * 10 8 7 12 12 C 1.53186 * 109.31404 * 298.63331 * 11 10 8 13 13 N 1.46924 * 108.77928 * 54.63431 * 12 11 10 14 14 C 1.36942 * 120.63262 * 126.40880 * 13 12 11 15 15 H 1.07989 * 120.00054 * 210.46026 * 14 13 12 16 16 C 1.38815 * 119.99401 * 30.46554 * 14 13 12 17 17 N 1.31621 * 120.00167 * 12.21787 * 16 14 13 18 18 Si 1.86802 * 119.99588 * 192.21112 * 16 14 13 19 19 H 1.48508 * 109.46847 * 60.00257 * 18 16 14 20 20 H 1.48500 * 109.46773 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47445 * 300.00373 * 18 16 14 22 22 C 1.46925 * 118.73887 * 306.39575 * 13 12 11 23 23 H 1.09007 * 109.70096 * 293.75106 * 22 13 12 24 24 C 1.52993 * 109.58824 * 173.39376 * 22 13 12 25 25 C 1.41466 * 107.00773 * 180.28779 * 4 3 2 26 26 N 1.30316 * 108.13409 * 359.55400 * 25 4 3 27 27 N 1.34660 * 126.40637 * 274.72600 * 3 2 1 28 28 C 1.46503 * 125.74232 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47527 * 175.17317 * 1 2 3 30 30 H 1.09000 * 109.47328 * 295.17980 * 1 2 3 31 31 H 1.09011 * 109.47029 * 55.17200 * 1 2 3 32 32 H 0.96999 * 120.00243 * 0.28569 * 7 5 4 33 33 H 1.09007 * 109.45545 * 61.43540 * 10 8 7 34 34 H 1.09002 * 109.46333 * 181.39138 * 10 8 7 35 35 H 1.08999 * 109.49807 * 178.67945 * 11 10 8 36 36 H 1.09002 * 109.52843 * 58.60107 * 11 10 8 37 37 H 1.08994 * 109.58757 * 294.84583 * 12 11 10 38 38 H 1.09005 * 109.58963 * 174.42286 * 12 11 10 39 39 H 0.97004 * 119.99352 * 180.02562 * 17 16 14 40 40 H 1.09008 * 109.47184 * 300.70711 * 24 22 13 41 41 H 1.08999 * 109.47334 * 60.71060 * 24 22 13 42 42 H 1.09005 * 109.47245 * 180.71382 * 24 22 13 43 43 H 1.08001 * 125.93294 * 179.74409 * 25 4 3 44 44 H 1.09001 * 109.46950 * 94.64639 * 28 27 3 45 45 H 1.08999 * 109.47236 * 214.64267 * 28 27 3 46 46 H 1.09005 * 109.46716 * 334.64467 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4997 1.8993 1.1149 5 6 2.4065 1.4620 2.5145 6 8 1.8887 0.3948 2.7851 7 7 2.9001 2.2402 3.4979 8 6 2.8126 1.8014 4.8929 9 1 2.9277 0.7186 4.9416 10 6 1.4509 2.1973 5.4685 11 6 1.2752 3.7144 5.3700 12 6 2.3673 4.4054 6.1925 13 7 3.6782 3.9193 5.7412 14 6 4.6544 4.7996 5.3571 15 1 5.3751 4.5126 4.6057 16 6 4.7175 6.0607 5.9336 17 7 4.0051 6.3300 7.0071 18 14 5.8138 7.3756 5.1860 19 1 5.3862 7.6408 3.7888 20 1 5.7039 8.6236 5.9833 21 1 7.2229 6.9074 5.1919 22 6 3.9221 2.4708 5.7100 23 1 3.9171 2.0754 6.7258 24 6 5.2781 2.1928 5.0582 25 6 3.0652 3.1087 0.6472 26 7 2.9624 3.1289 -0.6518 27 7 2.3269 1.9585 -1.0801 28 6 2.0210 1.6103 -2.4699 29 1 -0.3634 -1.0240 -0.0865 30 1 -0.3634 0.4372 0.9300 31 1 -0.3634 0.5870 -0.8437 32 1 3.3132 3.0909 3.2821 33 1 0.6604 1.7027 4.9041 34 1 1.3959 1.8925 6.5136 35 1 0.2958 3.9931 5.7586 36 1 1.3544 4.0234 4.3277 37 1 2.2338 4.1697 7.2482 38 1 2.3074 5.4840 6.0464 39 1 4.0490 7.2115 7.4097 40 1 5.2828 2.5933 4.0444 41 1 6.0660 2.6698 5.6410 42 1 5.4514 1.1171 5.0246 43 1 3.5083 3.8798 1.2599 44 1 1.0696 2.0587 -2.7559 45 1 2.8102 1.9866 -3.1208 46 1 1.9558 0.5266 -2.5669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994296807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:49 Heat of formation + Delta-G solvation = 13.219947 kcal Electronic energy + Delta-G solvation = -28919.996657 eV Core-core repulsion = 25040.060986 eV Total energy + Delta-G solvation = -3879.935672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61838 -40.77806 -39.19560 -38.84577 -35.49802 -34.49851 -33.85636 -33.26636 -31.41758 -30.65950 -28.51489 -27.79809 -27.54101 -26.76053 -24.33320 -23.34542 -22.30555 -22.14010 -21.32483 -20.16269 -19.37422 -18.19263 -17.93384 -17.48309 -17.04492 -16.78103 -16.19554 -16.00699 -15.74832 -15.64448 -15.57843 -15.12713 -14.87030 -14.61199 -14.58939 -14.39126 -14.14794 -13.59019 -13.55566 -13.48351 -12.91747 -12.89228 -12.78585 -12.64363 -12.39776 -12.39002 -12.30472 -12.11316 -11.88721 -11.60651 -11.31463 -11.30041 -10.98349 -10.79716 -10.49701 -10.42659 -9.96273 -9.59365 -8.52628 -7.75112 -5.23714 0.16034 1.07082 1.10390 1.55321 1.56384 1.61564 2.34143 2.47084 2.59224 2.63716 3.40762 3.42077 3.65892 3.95573 4.02552 4.08339 4.14616 4.18839 4.28195 4.32455 4.36523 4.38227 4.46119 4.58877 4.61958 4.65696 4.68197 4.73029 4.87227 5.01275 5.05510 5.07555 5.11615 5.19661 5.29534 5.33444 5.41256 5.51863 5.63350 5.75489 5.80815 5.88264 6.27506 6.38866 6.51474 6.81782 7.26398 7.44448 7.95821 8.49639 9.30963 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.004191 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.572273 B = 6679.499670 C = 7748.140974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.316 3.684 4 C -0.317 4.317 5 C 0.592 3.408 6 O -0.584 6.584 7 N -0.693 5.693 8 C 0.146 3.854 9 H 0.078 0.922 10 C -0.114 4.114 11 C -0.126 4.126 12 C 0.180 3.820 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.081 0.919 16 C -0.047 4.047 17 N -0.937 5.937 18 Si 0.958 3.042 19 H -0.274 1.274 20 H -0.305 1.305 21 H -0.279 1.279 22 C 0.158 3.842 23 H 0.031 0.969 24 C -0.128 4.128 25 C 0.096 3.904 26 N -0.293 5.293 27 N -0.365 5.365 28 C 0.082 3.918 29 H 0.129 0.871 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.407 0.593 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.052 0.948 37 H -0.007 1.007 38 H 0.058 0.942 39 H 0.245 0.755 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.208 0.792 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -10.364 -17.253 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.141 3.859 4 C -0.333 4.333 5 C 0.380 3.620 6 O -0.466 6.466 7 N -0.343 5.343 8 C 0.040 3.960 9 H 0.096 0.904 10 C -0.152 4.152 11 C -0.165 4.165 12 C 0.054 3.946 13 N -0.319 5.319 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.242 4.242 17 N -0.584 5.584 18 Si 0.787 3.213 19 H -0.200 1.200 20 H -0.231 1.231 21 H -0.205 1.205 22 C 0.051 3.949 23 H 0.049 0.951 24 C -0.185 4.185 25 C -0.090 4.090 26 N -0.116 5.116 27 N -0.155 5.155 28 C -0.057 4.057 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.243 0.757 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.225 0.775 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.808 -10.600 -18.150 22.093 hybrid contribution 0.380 1.080 0.930 1.475 sum -6.428 -9.520 -17.220 20.699 Atomic orbital electron populations 1.23337 0.75060 1.05930 1.01502 1.85983 1.22983 1.20029 1.92990 1.19361 0.95044 0.84729 0.86785 1.20114 1.20237 0.99806 0.93146 1.17186 0.77424 0.83297 0.84047 1.90721 1.47252 1.24034 1.84557 1.45658 1.59818 1.23087 1.05690 1.21298 0.95861 0.98153 0.80728 0.90411 1.21707 0.96755 0.96281 1.00498 1.21950 0.98753 0.95331 1.00439 1.20583 0.83327 0.97827 0.92830 1.44308 1.10608 0.99967 1.77063 1.19458 1.08666 0.94197 1.15219 0.90188 1.25784 1.00572 1.01577 0.96311 1.70154 1.45499 1.21138 1.21569 0.85492 0.79232 0.78667 0.77916 1.19981 1.23145 1.20537 1.20833 0.93387 0.85008 0.95674 0.95147 1.21700 0.96005 1.00187 1.00626 1.24214 0.96458 0.96398 0.91979 1.77200 1.19120 1.01813 1.13426 1.49272 1.44501 1.13657 1.08037 1.22398 1.04320 1.03623 0.75327 0.85311 0.93978 0.91199 0.75688 0.92761 0.91560 0.92192 0.92916 0.98879 0.92394 0.94563 0.92427 0.93373 0.92008 0.77505 0.88309 0.87474 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.13 113.37 1.26 1.88 16 2 O -0.31 -7.82 9.74 -79.41 -0.77 -8.59 16 3 C 0.32 8.50 6.98 84.44 0.59 9.08 16 4 C -0.32 -9.60 6.15 -20.03 -0.12 -9.72 16 5 C 0.59 20.37 7.76 86.52 0.67 21.05 16 6 O -0.58 -22.99 16.04 2.69 0.04 -22.94 16 7 N -0.69 -23.18 3.46 -445.89 -1.54 -24.72 16 8 C 0.15 5.13 2.33 45.07 0.10 5.24 16 9 H 0.08 2.75 7.58 -2.39 -0.02 2.74 16 10 C -0.11 -3.95 5.58 30.62 0.17 -3.78 16 11 C -0.13 -4.69 5.93 30.67 0.18 -4.51 16 12 C 0.18 8.29 5.26 86.36 0.45 8.75 16 13 N -0.60 -27.13 2.64 -675.24 -1.79 -28.92 16 14 C -0.25 -12.07 8.58 84.03 0.72 -11.35 16 15 H 0.08 3.72 6.23 -2.92 -0.02 3.71 16 16 C -0.05 -2.48 5.02 84.86 0.43 -2.05 16 17 N -0.94 -53.26 11.07 21.65 0.24 -53.02 16 18 Si 0.96 42.75 29.57 68.60 2.03 44.77 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 C 0.16 6.12 3.20 44.97 0.14 6.26 16 23 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 24 C -0.13 -4.49 7.73 71.98 0.56 -3.94 16 25 C 0.10 2.60 11.50 85.71 0.99 3.59 16 26 N -0.29 -7.68 12.47 -56.22 -0.70 -8.38 16 27 N -0.37 -8.20 3.99 -479.80 -1.91 -10.12 16 28 C 0.08 0.95 11.41 127.77 1.46 2.41 16 29 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.41 13.63 6.72 -92.71 -0.62 13.00 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.98 7.53 -2.39 -0.02 1.96 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.06 3.04 6.08 -2.38 -0.01 3.02 16 39 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.06 1.98 6.37 -2.38 -0.02 1.96 16 41 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 42 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.21 4.92 7.50 -2.91 -0.02 4.90 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.91 8.02 -2.38 -0.02 0.89 16 Total: -1.00 -67.69 370.44 3.57 -64.12 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.37 Total: 24.91 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.60 Total: 22.89 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -5.70 Total: -125.16 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.73 Total: -31.54 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.69 3.57 -64.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994296807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.340 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds