Wall clock time and date at job start Tue Mar 31 2020 15:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47571 * 2 1 4 4 N 1.46502 * 109.46805 * 120.00378 * 2 1 3 5 5 C 1.34780 * 120.00024 * 274.99586 * 4 2 1 6 6 O 1.21732 * 119.99719 * 355.93153 * 5 4 2 7 7 C 1.46376 * 119.99792 * 175.93993 * 5 4 2 8 8 C 1.36716 * 126.83295 * 4.88009 * 7 5 4 9 9 N 1.33218 * 107.97008 * 179.97438 * 8 7 5 10 10 C 1.31536 * 109.75727 * 359.97438 * 9 8 7 11 11 O 1.35206 * 125.49210 * 180.02562 * 10 9 8 12 12 N 1.34946 * 109.01697 * 359.76818 * 10 9 8 13 13 C 1.46499 * 126.54531 * 180.25775 * 12 10 9 14 14 C 1.52999 * 109.46969 * 239.99684 * 2 1 3 15 15 C 1.53049 * 109.45643 * 60.00440 * 14 2 1 16 16 C 1.53187 * 109.31177 * 181.38058 * 15 14 2 17 17 N 1.46920 * 108.78068 * 305.36855 * 16 15 14 18 18 C 1.36942 * 120.63141 * 233.58682 * 17 16 15 19 19 H 1.08001 * 119.99779 * 37.12160 * 18 17 16 20 20 C 1.38810 * 120.00018 * 217.12579 * 18 17 16 21 21 N 1.31621 * 120.00104 * 23.63731 * 20 18 17 22 22 Si 1.86798 * 120.00013 * 203.36881 * 20 18 17 23 23 H 1.48507 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47427 * 119.99785 * 22 20 18 25 25 H 1.48501 * 109.46810 * 240.00067 * 22 20 18 26 26 C 1.46927 * 118.74036 * 53.85667 * 17 16 15 27 27 C 1.53039 * 109.46054 * 180.02562 * 14 2 1 28 28 H 1.08994 * 109.47571 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46680 * 300.00040 * 1 2 3 30 30 H 1.09000 * 109.46943 * 59.99667 * 1 2 3 31 31 H 0.97004 * 120.00236 * 94.99898 * 4 2 1 32 32 H 1.08007 * 126.01341 * 359.94455 * 8 7 5 33 33 H 0.96698 * 114.00119 * 90.02912 * 11 10 9 34 34 H 1.08998 * 109.47727 * 270.95149 * 13 12 10 35 35 H 1.09005 * 109.46979 * 30.95447 * 13 12 10 36 36 H 1.09005 * 109.46739 * 150.94870 * 13 12 10 37 37 H 1.08996 * 109.45358 * 300.04436 * 14 2 1 38 38 H 1.09001 * 109.49562 * 61.43611 * 15 14 2 39 39 H 1.08998 * 109.49602 * 301.33528 * 15 14 2 40 40 H 1.09000 * 109.58916 * 185.57588 * 16 15 14 41 41 H 1.09000 * 109.58639 * 65.15639 * 16 15 14 42 42 H 0.96997 * 119.99892 * 7.33574 * 21 20 18 43 43 H 1.08998 * 109.58638 * 65.92912 * 26 17 16 44 44 H 1.08994 * 109.58717 * 186.35696 * 26 17 16 45 45 H 1.09000 * 109.49723 * 298.57066 * 27 14 2 46 46 H 1.08997 * 109.49823 * 58.66485 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.9287 1.1786 2.3948 7 6 2.5495 -0.7276 3.5728 8 6 2.9171 -2.0407 3.6719 9 7 3.2083 -2.2908 4.9476 10 6 3.0439 -1.1995 5.6634 11 8 3.2514 -1.0958 6.9954 12 7 2.6403 -0.1988 4.8531 13 6 2.3502 1.1814 5.2494 14 6 2.0400 -0.7213 -1.2492 15 6 1.5297 0.0004 -2.4986 16 6 2.0135 -0.7442 -3.7469 17 7 3.4752 -0.8772 -3.6816 18 6 4.2616 -0.4519 -4.7189 19 1 3.9988 0.4426 -5.2641 20 6 5.3963 -1.1704 -5.0695 21 7 5.4863 -2.4479 -4.7656 22 14 6.7923 -0.3262 -5.9794 23 1 6.4444 1.0996 -6.2064 24 1 8.0337 -0.4103 -5.1691 25 1 7.0080 -0.9968 -7.2867 26 6 4.0769 -1.4807 -2.4847 27 6 3.5704 -0.7218 -1.2487 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.9628 -2.7505 2.8591 33 1 4.1531 -0.8410 7.2343 34 1 1.3020 1.2644 5.5365 35 1 2.9812 1.4571 6.0944 36 1 2.5517 1.8498 4.4122 37 1 1.6758 -1.7487 -1.2492 38 1 1.9138 1.0204 -2.5119 39 1 0.4400 0.0215 -2.4870 40 1 1.7373 -0.1810 -4.6384 41 1 1.5577 -1.7337 -3.7817 42 1 4.7208 -2.9130 -4.3934 43 1 3.7860 -2.5291 -2.4185 44 1 5.1625 -1.4035 -2.5430 45 1 3.9345 0.3053 -1.2741 46 1 3.9337 -1.2148 -0.3471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997259552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:18 Heat of formation + Delta-G solvation = -1.035719 kcal Electronic energy + Delta-G solvation = -27756.674995 eV Core-core repulsion = 23876.121152 eV Total energy + Delta-G solvation = -3880.553844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56672 -39.86658 -38.12043 -37.64701 -35.60928 -34.42417 -33.14872 -31.38319 -30.34793 -29.52254 -28.52129 -27.43256 -25.35306 -23.97039 -22.66828 -22.17556 -21.93364 -20.59601 -20.48078 -19.25414 -18.97665 -17.78080 -17.26700 -16.74609 -16.35352 -15.86115 -15.11056 -14.79618 -14.59708 -14.38717 -14.14982 -13.88680 -13.58580 -13.53594 -13.46533 -13.22147 -13.09474 -13.05740 -12.57294 -12.51683 -12.44429 -11.74806 -11.57996 -11.41329 -10.89211 -10.68533 -10.61974 -10.42285 -10.25988 -10.18129 -10.12673 -10.08469 -9.91488 -9.73726 -9.27963 -9.15760 -8.77948 -8.35416 -6.82530 -6.01938 -3.33658 0.87536 1.83298 2.30211 3.08925 3.10071 3.42133 3.50562 3.52698 3.66762 4.33606 4.40342 4.58961 4.68505 4.83042 4.83337 4.98276 5.08115 5.18200 5.19383 5.29967 5.43714 5.50324 5.60723 5.63903 5.70401 5.84912 5.95534 5.99485 6.02010 6.10094 6.15217 6.18800 6.29719 6.40341 6.49229 6.51666 6.62386 6.74358 6.84284 7.03571 7.09251 7.17420 7.31557 7.45711 8.00453 8.10887 8.60999 9.14406 9.83460 10.33060 11.19916 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.002801 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.437158 B = 9994.128558 C =10753.984194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.704 5.704 5 C 0.596 3.404 6 O -0.548 6.548 7 C -0.076 4.076 8 C 0.056 3.944 9 N -0.486 5.486 10 C 0.393 3.607 11 O -0.440 6.440 12 N -0.428 5.428 13 C 0.066 3.934 14 C -0.084 4.084 15 C -0.125 4.125 16 C 0.146 3.854 17 N -0.597 5.597 18 C -0.352 4.352 19 H 0.050 0.950 20 C -0.018 4.018 21 N -0.912 5.912 22 Si 1.067 2.933 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.156 3.844 27 C -0.129 4.129 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.403 0.597 32 H 0.187 0.813 33 H 0.404 0.596 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.015 0.985 42 H 0.269 0.731 43 H 0.017 0.983 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 4.287 19.684 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.108 0.892 4 N -0.354 5.354 5 C 0.383 3.617 6 O -0.427 6.427 7 C -0.192 4.192 8 C -0.099 4.099 9 N -0.214 5.214 10 C 0.094 3.906 11 O -0.241 6.241 12 N -0.121 5.121 13 C -0.076 4.076 14 C -0.103 4.103 15 C -0.165 4.165 16 C 0.020 3.980 17 N -0.321 5.321 18 C -0.481 4.481 19 H 0.068 0.932 20 C -0.222 4.222 21 N -0.550 5.550 22 Si 0.897 3.103 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.221 1.221 26 C 0.030 3.970 27 C -0.168 4.168 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.204 0.796 33 H 0.262 0.738 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.620 4.245 19.645 21.160 hybrid contribution -1.239 0.674 0.514 1.501 sum -7.859 4.920 20.158 22.189 Atomic orbital electron populations 1.22220 0.95343 1.02149 1.02372 1.21200 0.93656 0.97718 0.83031 0.89243 1.45748 1.66457 1.14230 1.08955 1.16579 0.77116 0.86072 0.81965 1.90792 1.51935 1.14196 1.85752 1.20650 1.17076 0.95798 0.85719 1.22597 1.00218 0.92994 0.94087 1.70317 1.22789 1.24454 1.03875 1.20251 1.02527 0.83761 0.84043 1.84823 1.36490 1.89996 1.12761 1.45648 1.48833 1.10906 1.06708 1.22290 1.02839 0.79092 1.03334 1.21332 0.96977 0.99215 0.92819 1.22071 0.98829 1.00047 0.95519 1.20933 0.86027 0.96289 0.94769 1.44073 0.99894 1.72782 1.15368 1.19927 1.09359 1.06878 1.11972 0.93237 1.25969 1.01855 0.95246 0.99094 1.70706 1.34517 1.07677 1.42123 0.83520 0.76067 0.74614 0.76117 1.21765 1.21638 1.22055 1.20966 0.98089 0.93293 0.84650 1.22186 0.93803 1.01662 0.99177 0.92433 0.92725 0.90902 0.76232 0.79591 0.73799 0.90062 0.89614 0.87212 0.91282 0.92092 0.92529 0.92632 0.96748 0.92053 0.96526 0.91287 0.92289 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.13 37.16 0.34 -1.49 16 2 C 0.15 1.87 2.19 -67.93 -0.15 1.73 16 3 H 0.09 1.32 7.52 -51.93 -0.39 0.93 16 4 N -0.70 -8.03 4.35 -55.21 -0.24 -8.27 16 5 C 0.60 7.62 7.74 -12.99 -0.10 7.52 16 6 O -0.55 -8.37 14.50 5.16 0.07 -8.29 16 7 C -0.08 -0.89 6.92 -81.98 -0.57 -1.45 16 8 C 0.06 0.61 11.35 -17.50 -0.20 0.41 16 9 N -0.49 -5.99 11.22 -14.62 -0.16 -6.16 16 10 C 0.39 4.24 9.01 -89.59 -0.81 3.43 16 11 O -0.44 -3.47 13.53 -17.31 -0.23 -3.70 16 12 N -0.43 -4.55 3.20 -122.12 -0.39 -4.94 16 13 C 0.07 0.53 10.71 59.85 0.64 1.17 16 14 C -0.08 -1.22 1.79 -90.57 -0.16 -1.39 16 15 C -0.13 -1.99 5.04 -26.61 -0.13 -2.13 16 16 C 0.15 2.95 6.51 -3.72 -0.02 2.92 16 17 N -0.60 -14.48 2.70 -172.06 -0.47 -14.94 16 18 C -0.35 -9.69 9.39 -15.06 -0.14 -9.83 16 19 H 0.05 1.39 7.93 -52.49 -0.42 0.98 16 20 C -0.02 -0.51 4.68 -17.43 -0.08 -0.59 16 21 N -0.91 -26.95 12.74 55.49 0.71 -26.25 16 22 Si 1.07 25.12 29.98 -169.99 -5.10 20.03 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 C 0.16 3.45 4.88 -3.48 -0.02 3.44 16 27 C -0.13 -2.22 5.24 -26.38 -0.14 -2.36 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 31 H 0.40 3.79 7.31 -40.82 -0.30 3.49 16 32 H 0.19 1.48 7.45 -52.48 -0.39 1.09 16 33 H 0.40 1.04 9.06 45.56 0.41 1.46 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.11 1.04 6.38 -51.93 -0.33 0.71 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.27 8.01 7.13 -40.82 -0.29 7.72 16 43 H 0.02 0.38 7.91 -51.93 -0.41 -0.04 16 44 H 0.07 1.74 6.94 -51.93 -0.36 1.38 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.74 7.41 -51.93 -0.38 0.36 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -34.68 368.98 -7.90 -42.58 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.11 Total: 3.02 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.54 Total: 1.37 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.55 Total: -60.56 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.16 Total: -11.99 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.68 -7.90 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997259552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.544 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds