Wall clock time and date at job start Tue Mar 31 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47571 * 2 1 4 4 N 1.46502 * 109.46805 * 120.00378 * 2 1 3 5 5 C 1.34780 * 120.00024 * 274.99586 * 4 2 1 6 6 O 1.21732 * 119.99719 * 355.93153 * 5 4 2 7 7 C 1.46376 * 119.99792 * 175.93993 * 5 4 2 8 8 C 1.36716 * 126.83295 * 4.88009 * 7 5 4 9 9 N 1.33218 * 107.97008 * 179.97438 * 8 7 5 10 10 C 1.31536 * 109.75727 * 359.97438 * 9 8 7 11 11 O 1.35206 * 125.49210 * 180.02562 * 10 9 8 12 12 N 1.34946 * 109.01697 * 359.76818 * 10 9 8 13 13 C 1.46499 * 126.54531 * 180.25775 * 12 10 9 14 14 C 1.52999 * 109.46969 * 239.99684 * 2 1 3 15 15 C 1.53049 * 109.45643 * 60.00440 * 14 2 1 16 16 C 1.53187 * 109.31177 * 181.38058 * 15 14 2 17 17 N 1.46920 * 108.78068 * 305.36855 * 16 15 14 18 18 C 1.36942 * 120.63141 * 233.58682 * 17 16 15 19 19 H 1.08001 * 119.99779 * 37.12160 * 18 17 16 20 20 C 1.38810 * 120.00018 * 217.12579 * 18 17 16 21 21 N 1.31621 * 120.00104 * 23.63731 * 20 18 17 22 22 Si 1.86798 * 120.00013 * 203.36881 * 20 18 17 23 23 H 1.48507 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47427 * 119.99785 * 22 20 18 25 25 H 1.48501 * 109.46810 * 240.00067 * 22 20 18 26 26 C 1.46927 * 118.74036 * 53.85667 * 17 16 15 27 27 C 1.53039 * 109.46054 * 180.02562 * 14 2 1 28 28 H 1.08994 * 109.47571 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46680 * 300.00040 * 1 2 3 30 30 H 1.09000 * 109.46943 * 59.99667 * 1 2 3 31 31 H 0.97004 * 120.00236 * 94.99898 * 4 2 1 32 32 H 1.08007 * 126.01341 * 359.94455 * 8 7 5 33 33 H 0.96698 * 114.00119 * 90.02912 * 11 10 9 34 34 H 1.08998 * 109.47727 * 270.95149 * 13 12 10 35 35 H 1.09005 * 109.46979 * 30.95447 * 13 12 10 36 36 H 1.09005 * 109.46739 * 150.94870 * 13 12 10 37 37 H 1.08996 * 109.45358 * 300.04436 * 14 2 1 38 38 H 1.09001 * 109.49562 * 61.43611 * 15 14 2 39 39 H 1.08998 * 109.49602 * 301.33528 * 15 14 2 40 40 H 1.09000 * 109.58916 * 185.57588 * 16 15 14 41 41 H 1.09000 * 109.58639 * 65.15639 * 16 15 14 42 42 H 0.96997 * 119.99892 * 7.33574 * 21 20 18 43 43 H 1.08998 * 109.58638 * 65.92912 * 26 17 16 44 44 H 1.08994 * 109.58717 * 186.35696 * 26 17 16 45 45 H 1.09000 * 109.49723 * 298.57066 * 27 14 2 46 46 H 1.08997 * 109.49823 * 58.66485 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.9287 1.1786 2.3948 7 6 2.5495 -0.7276 3.5728 8 6 2.9171 -2.0407 3.6719 9 7 3.2083 -2.2908 4.9476 10 6 3.0439 -1.1995 5.6634 11 8 3.2514 -1.0958 6.9954 12 7 2.6403 -0.1988 4.8531 13 6 2.3502 1.1814 5.2494 14 6 2.0400 -0.7213 -1.2492 15 6 1.5297 0.0004 -2.4986 16 6 2.0135 -0.7442 -3.7469 17 7 3.4752 -0.8772 -3.6816 18 6 4.2616 -0.4519 -4.7189 19 1 3.9988 0.4426 -5.2641 20 6 5.3963 -1.1704 -5.0695 21 7 5.4863 -2.4479 -4.7656 22 14 6.7923 -0.3262 -5.9794 23 1 6.4444 1.0996 -6.2064 24 1 8.0337 -0.4103 -5.1691 25 1 7.0080 -0.9968 -7.2867 26 6 4.0769 -1.4807 -2.4847 27 6 3.5704 -0.7218 -1.2487 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.9628 -2.7505 2.8591 33 1 4.1531 -0.8410 7.2343 34 1 1.3020 1.2644 5.5365 35 1 2.9812 1.4571 6.0944 36 1 2.5517 1.8498 4.4122 37 1 1.6758 -1.7487 -1.2492 38 1 1.9138 1.0204 -2.5119 39 1 0.4400 0.0215 -2.4870 40 1 1.7373 -0.1810 -4.6384 41 1 1.5577 -1.7337 -3.7817 42 1 4.7208 -2.9130 -4.3934 43 1 3.7860 -2.5291 -2.4185 44 1 5.1625 -1.4035 -2.5430 45 1 3.9345 0.3053 -1.2741 46 1 3.9337 -1.2148 -0.3471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997259552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:17 Heat of formation + Delta-G solvation = -27.674183 kcal Electronic energy + Delta-G solvation = -27757.830126 eV Core-core repulsion = 23876.121152 eV Total energy + Delta-G solvation = -3881.708974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.35760 -40.91858 -39.45133 -38.35912 -36.98715 -35.28084 -34.61746 -32.82217 -31.90535 -30.79751 -29.61590 -28.11522 -27.02192 -25.18077 -24.00088 -23.69263 -22.78652 -21.81875 -21.47615 -20.68862 -19.71462 -19.29940 -18.55093 -17.58693 -17.29510 -16.73360 -16.35943 -16.00043 -15.95001 -15.58855 -15.39453 -15.21645 -15.07203 -14.80781 -14.77644 -14.42456 -13.98544 -13.87780 -13.71598 -13.67363 -13.25318 -13.20469 -12.98711 -12.77922 -12.57309 -12.31539 -11.99380 -11.90061 -11.72903 -11.54365 -11.47979 -11.25978 -11.08195 -10.97810 -10.91797 -10.45521 -10.20008 -9.59607 -8.86937 -8.14970 -5.48932 0.06047 1.08314 1.50000 1.57892 1.64926 1.81623 2.18255 2.19884 2.65071 2.77557 3.22023 3.50879 3.58484 3.70186 3.77243 3.90174 3.91150 3.99145 4.24062 4.28201 4.38112 4.42356 4.47260 4.52359 4.58108 4.63429 4.73939 4.83270 4.89357 4.94530 5.00503 5.06849 5.14966 5.16834 5.27593 5.27970 5.29627 5.37364 5.45032 5.51302 5.61960 5.93034 6.39421 6.43551 6.53521 6.66306 7.07902 7.13884 7.79190 8.27797 8.99720 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.002801 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.437158 B = 9994.128558 C =10753.984194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.069 0.931 4 N -0.696 5.696 5 C 0.599 3.401 6 O -0.577 6.577 7 C -0.097 4.097 8 C 0.062 3.938 9 N -0.518 5.518 10 C 0.401 3.599 11 O -0.441 6.441 12 N -0.432 5.432 13 C 0.064 3.936 14 C -0.073 4.073 15 C -0.114 4.114 16 C 0.140 3.860 17 N -0.618 5.618 18 C -0.357 4.357 19 H 0.039 0.961 20 C -0.068 4.068 21 N -0.937 5.937 22 Si 1.114 2.886 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.289 1.289 26 C 0.161 3.839 27 C -0.115 4.115 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.414 0.586 32 H 0.210 0.790 33 H 0.428 0.572 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.011 0.989 44 H 0.029 0.971 45 H 0.040 0.960 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 4.523 21.212 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.087 0.913 4 N -0.347 5.347 5 C 0.386 3.614 6 O -0.459 6.459 7 C -0.213 4.213 8 C -0.093 4.093 9 N -0.247 5.247 10 C 0.101 3.899 11 O -0.245 6.245 12 N -0.124 5.124 13 C -0.077 4.077 14 C -0.092 4.092 15 C -0.153 4.153 16 C 0.015 3.985 17 N -0.343 5.343 18 C -0.488 4.488 19 H 0.057 0.943 20 C -0.266 4.266 21 N -0.577 5.577 22 Si 0.939 3.061 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.216 1.216 26 C 0.036 3.964 27 C -0.154 4.154 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.251 0.749 32 H 0.227 0.773 33 H 0.290 0.710 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.502 4.490 21.198 22.930 hybrid contribution -0.994 0.601 0.109 1.167 sum -8.496 5.090 21.307 23.496 Atomic orbital electron populations 1.22165 0.93627 1.03174 1.02485 1.20932 0.94788 0.96323 0.82444 0.91256 1.45624 1.66120 1.14693 1.08266 1.16699 0.76556 0.85685 0.82449 1.90781 1.53404 1.15480 1.86215 1.20551 1.18722 0.96173 0.85872 1.23026 0.98822 0.93083 0.94351 1.70335 1.24272 1.25475 1.04626 1.20370 1.01293 0.83506 0.84725 1.84785 1.38637 1.90018 1.11096 1.45805 1.48567 1.11652 1.06425 1.22418 1.03881 0.77668 1.03688 1.21208 0.94641 1.00178 0.93211 1.21933 1.00861 0.98644 0.93848 1.21088 0.83773 0.96899 0.96703 1.44332 1.01563 1.72954 1.15404 1.20126 1.10010 1.06213 1.12415 0.94338 1.27235 1.04301 0.95201 0.99846 1.70829 1.33974 1.08605 1.44295 0.82887 0.73570 0.74526 0.75162 1.20114 1.21304 1.21586 1.20846 0.95822 0.93588 0.86148 1.21994 0.95977 0.99870 0.97561 0.90913 0.93261 0.90173 0.74869 0.77301 0.71010 0.89583 0.86611 0.88870 0.89758 0.93277 0.88986 0.93664 0.96346 0.93562 0.97099 0.95237 0.94065 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.13 71.98 0.66 -2.40 16 2 C 0.16 3.71 2.19 44.99 0.10 3.81 16 3 H 0.07 1.96 7.52 -2.39 -0.02 1.94 16 4 N -0.70 -14.46 4.35 -446.77 -1.94 -16.41 16 5 C 0.60 14.52 7.74 86.36 0.67 15.19 16 6 O -0.58 -17.28 14.50 -4.45 -0.06 -17.35 16 7 C -0.10 -2.13 6.92 39.80 0.28 -1.85 16 8 C 0.06 1.24 11.35 84.13 0.96 2.20 16 9 N -0.52 -11.92 11.22 -313.65 -3.52 -15.44 16 10 C 0.40 7.90 9.01 179.99 1.62 9.52 16 11 O -0.44 -5.92 13.53 -84.87 -1.15 -7.07 16 12 N -0.43 -8.51 3.20 -651.99 -2.09 -10.60 16 13 C 0.06 0.94 10.71 127.77 1.37 2.30 16 14 C -0.07 -1.97 1.79 -10.76 -0.02 -1.99 16 15 C -0.11 -3.41 5.04 30.67 0.15 -3.26 16 16 C 0.14 5.60 6.51 86.36 0.56 6.16 16 17 N -0.62 -30.38 2.70 -698.27 -1.89 -32.26 16 18 C -0.36 -20.08 9.39 84.03 0.79 -19.29 16 19 H 0.04 2.21 7.93 -2.91 -0.02 2.19 16 20 C -0.07 -3.87 4.68 84.86 0.40 -3.48 16 21 N -0.94 -56.71 12.74 21.65 0.28 -56.44 16 22 Si 1.11 51.27 29.98 68.60 2.06 53.32 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 26 C 0.16 7.27 4.88 86.51 0.42 7.69 16 27 C -0.11 -3.87 5.24 30.82 0.16 -3.71 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.46 6.40 -2.39 -0.02 1.44 16 31 H 0.41 6.68 7.31 -92.71 -0.68 6.00 16 32 H 0.21 2.83 7.45 -2.91 -0.02 2.81 16 33 H 0.43 1.08 9.06 -74.06 -0.67 0.41 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 1.71 6.38 -2.38 -0.02 1.70 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.16 6.36 -2.39 -0.02 2.14 16 40 H 0.04 1.86 7.93 -2.39 -0.02 1.84 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.25 15.67 7.13 -92.71 -0.66 15.01 16 43 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 44 H 0.03 1.53 6.94 -2.39 -0.02 1.51 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 2.11 7.41 -2.39 -0.02 2.09 16 Total: -1.00 -76.93 368.98 -0.43 -77.37 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.22 Total: 14.00 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 8.11 Total: 10.88 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -9.16 Total: -131.15 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.21 Total: -24.42 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.06 Total: 53.32 kcal Total: -76.93 -0.43 -77.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997259552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.693 kcal (2) G-P(sol) polarization free energy of solvation -76.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds