Wall clock time and date at job start Tue Mar 31 2020 15:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 N 1.46497 * 109.47098 * 239.99733 * 2 1 3 5 5 C 1.34779 * 120.00058 * 84.99875 * 4 2 1 6 6 O 1.21735 * 120.00136 * 354.76639 * 5 4 2 7 7 C 1.46378 * 120.00040 * 174.76075 * 5 4 2 8 8 C 1.36723 * 126.82796 * 5.05792 * 7 5 4 9 9 N 1.33222 * 107.96485 * 179.86462 * 8 7 5 10 10 C 1.31541 * 109.75809 * 0.40432 * 9 8 7 11 11 O 1.35202 * 125.48878 * 179.76907 * 10 9 8 12 12 N 1.34942 * 109.01612 * 359.74291 * 10 9 8 13 13 C 1.46502 * 126.54066 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47259 * 119.99776 * 2 1 3 15 15 C 1.53045 * 109.45855 * 60.02760 * 14 2 1 16 16 C 1.53193 * 109.30998 * 178.60193 * 15 14 2 17 17 N 1.46925 * 108.76587 * 54.65709 * 16 15 14 18 18 C 1.36939 * 120.63208 * 126.40316 * 17 16 15 19 19 H 1.07996 * 120.00030 * 324.39658 * 18 17 16 20 20 C 1.38817 * 119.99852 * 144.39526 * 18 17 16 21 21 N 1.31616 * 119.99958 * 344.98400 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 164.97869 * 20 18 17 23 23 H 1.48504 * 109.47439 * 60.00082 * 22 20 18 24 24 H 1.48501 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47256 * 300.00164 * 22 20 18 26 26 C 1.46931 * 118.73706 * 306.38162 * 17 16 15 27 27 C 1.53035 * 109.46052 * 299.97508 * 14 2 1 28 28 H 1.08995 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47079 * 59.99980 * 1 2 3 30 30 H 1.08998 * 109.47067 * 300.00407 * 1 2 3 31 31 H 0.97001 * 120.00180 * 265.00162 * 4 2 1 32 32 H 1.08001 * 126.01357 * 359.97438 * 8 7 5 33 33 H 0.96699 * 114.00353 * 269.97258 * 11 10 9 34 34 H 1.09003 * 109.47070 * 264.40998 * 13 12 10 35 35 H 1.08997 * 109.46938 * 24.41728 * 13 12 10 36 36 H 1.09007 * 109.46510 * 144.41162 * 13 12 10 37 37 H 1.08995 * 109.46373 * 179.97438 * 14 2 1 38 38 H 1.08999 * 109.49620 * 298.56338 * 15 14 2 39 39 H 1.08993 * 109.49768 * 58.66060 * 15 14 2 40 40 H 1.08991 * 109.60019 * 294.86279 * 16 15 14 41 41 H 1.09004 * 109.69668 * 174.50103 * 16 15 14 42 42 H 0.97002 * 119.99641 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.58301 * 293.81859 * 26 17 16 44 44 H 1.09001 * 109.70382 * 173.46753 * 26 17 16 45 45 H 1.09005 * 109.49683 * 301.33297 * 27 14 2 46 46 H 1.08998 * 109.50109 * 61.42834 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.7687 1.1359 -2.4373 7 6 2.7420 -0.6761 -3.5217 8 6 3.1233 -1.9856 -3.6174 9 7 3.6139 -2.1823 -4.8403 10 6 3.5705 -1.0587 -5.5229 11 8 3.9925 -0.8977 -6.7973 12 7 3.0364 -0.0929 -4.7465 13 6 2.8112 1.3046 -5.1239 14 6 2.0401 -0.7212 1.2493 15 6 1.5304 -2.1643 1.2487 16 6 2.0715 -2.8931 2.4826 17 7 1.7086 -2.1258 3.6819 18 6 1.0455 -2.7249 4.7194 19 1 0.3078 -3.4880 4.5200 20 6 1.3215 -2.3513 6.0276 21 7 2.4044 -1.6539 6.2983 22 14 0.1558 -2.8382 7.4036 23 1 0.0555 -4.3184 7.4669 24 1 0.6724 -2.3209 8.6962 25 1 -1.1875 -2.2617 7.1417 26 6 2.0712 -0.7034 3.7469 27 6 1.5304 0.0008 2.4986 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 2.2490 -1.6318 -1.1525 32 1 3.0397 -2.7298 -2.8393 33 1 4.9216 -0.6410 -6.8745 34 1 3.6509 1.9121 -4.7862 35 1 2.7219 1.3784 -6.2077 36 1 1.8929 1.6631 -4.6585 37 1 3.1300 -0.7215 1.2489 38 1 0.4407 -2.1652 1.2741 39 1 1.8741 -2.6711 0.3471 40 1 3.1564 -2.9725 2.4139 41 1 1.6352 -3.8903 2.5411 42 1 2.5974 -1.3932 7.2124 43 1 3.1561 -0.6041 3.7813 44 1 1.6346 -0.2532 4.6384 45 1 1.8742 1.0352 2.4868 46 1 0.4407 -0.0206 2.5121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997711085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:21 Heat of formation + Delta-G solvation = 5.305060 kcal Electronic energy + Delta-G solvation = -27658.758160 eV Core-core repulsion = 23778.479273 eV Total energy + Delta-G solvation = -3880.278887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.56652 -39.86662 -38.11335 -37.64208 -35.43461 -34.40543 -32.97372 -31.42599 -30.06546 -29.48415 -28.55585 -27.43191 -25.47423 -24.05876 -22.99087 -22.27311 -21.93778 -20.63013 -20.23008 -18.99348 -18.73356 -17.73791 -16.90223 -16.60478 -16.25465 -15.79845 -14.98487 -14.91774 -14.62371 -14.55256 -14.23728 -14.02699 -13.74735 -13.59049 -13.17366 -13.07362 -13.03002 -12.67939 -12.57017 -12.51718 -12.17005 -11.68683 -11.40452 -11.28069 -10.91973 -10.74009 -10.62935 -10.49941 -10.20479 -10.16983 -10.14718 -10.08677 -9.93529 -9.54745 -9.42323 -9.15935 -8.77220 -8.47800 -6.56399 -5.80308 -3.30135 0.88049 1.81779 2.31425 3.07989 3.14699 3.37239 3.41998 3.43010 3.44187 4.35329 4.40684 4.48488 4.70084 4.82437 4.96719 5.01622 5.11331 5.19259 5.29568 5.38442 5.49978 5.60293 5.63495 5.70430 5.82040 5.98458 6.02112 6.06100 6.10780 6.13840 6.26192 6.35052 6.39404 6.49111 6.62344 6.70577 6.74748 6.82005 6.99966 7.08671 7.30767 7.35146 7.46478 7.58646 7.80745 8.02759 8.49507 9.21819 9.83031 10.44818 11.27711 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.002458 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.698941 B =11390.688774 C =11833.469656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.084 0.916 4 N -0.705 5.705 5 C 0.594 3.406 6 O -0.548 6.548 7 C -0.076 4.076 8 C 0.055 3.945 9 N -0.486 5.486 10 C 0.393 3.607 11 O -0.440 6.440 12 N -0.428 5.428 13 C 0.067 3.933 14 C -0.085 4.085 15 C -0.130 4.130 16 C 0.146 3.854 17 N -0.589 5.589 18 C -0.259 4.259 19 H 0.060 0.940 20 C 0.010 3.990 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.176 3.824 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.402 0.598 32 H 0.187 0.813 33 H 0.405 0.595 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.016 0.984 41 H 0.053 0.947 42 H 0.255 0.745 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 4.962 -21.925 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.102 0.898 4 N -0.357 5.357 5 C 0.380 3.620 6 O -0.427 6.427 7 C -0.192 4.192 8 C -0.100 4.100 9 N -0.214 5.214 10 C 0.094 3.906 11 O -0.241 6.241 12 N -0.121 5.121 13 C -0.075 4.075 14 C -0.104 4.104 15 C -0.169 4.169 16 C 0.019 3.981 17 N -0.312 5.312 18 C -0.389 4.389 19 H 0.078 0.922 20 C -0.190 4.190 21 N -0.542 5.542 22 Si 0.730 3.270 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.050 3.950 27 C -0.173 4.173 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.204 0.796 33 H 0.262 0.738 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.089 5.167 -22.416 23.098 hybrid contribution -0.144 0.293 0.964 1.018 sum 1.944 5.460 -21.452 22.221 Atomic orbital electron populations 1.22234 0.95109 1.02558 1.02225 1.21191 0.94453 0.96790 0.82927 0.89755 1.45894 1.66460 1.14280 1.09019 1.16615 0.78168 0.85491 0.81720 1.90802 1.50647 1.17330 1.83925 1.20693 1.14847 0.95339 0.88308 1.22599 0.99254 0.93561 0.94588 1.70315 1.22811 1.23107 1.05198 1.20232 1.01014 0.84002 0.85396 1.84808 1.33313 1.89774 1.16204 1.45644 1.45354 1.10773 1.10352 1.22273 1.05219 0.77752 1.02288 1.21331 1.00179 0.95856 0.93060 1.22137 1.01289 0.94896 0.98597 1.20897 0.96170 0.94342 0.86672 1.43925 1.66908 1.04703 1.15656 1.19040 1.14615 1.20555 0.84727 0.92198 1.25235 0.96058 1.00027 0.97635 1.70012 1.23763 1.41385 1.19006 0.86419 0.80751 0.78386 0.81439 1.20777 1.21649 1.20919 1.20647 0.96445 0.83952 0.93951 1.22255 1.01059 0.97927 0.96083 0.91955 0.92853 0.90932 0.76115 0.79594 0.73784 0.90009 0.89191 0.87651 0.91231 0.91624 0.93710 0.96624 0.92832 0.93560 0.96302 0.90734 0.93186 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.78 37.16 0.33 -1.78 16 2 C 0.15 1.95 2.36 -67.93 -0.16 1.79 16 3 H 0.08 1.19 7.66 -51.93 -0.40 0.79 16 4 N -0.71 -8.04 4.98 -55.20 -0.28 -8.32 16 5 C 0.59 7.47 7.73 -12.98 -0.10 7.37 16 6 O -0.55 -8.23 14.68 5.16 0.08 -8.16 16 7 C -0.08 -0.86 6.92 -81.97 -0.57 -1.43 16 8 C 0.05 0.58 11.36 -17.50 -0.20 0.38 16 9 N -0.49 -5.82 11.22 -14.62 -0.16 -5.98 16 10 C 0.39 4.10 9.00 -89.59 -0.81 3.29 16 11 O -0.44 -3.32 13.44 -17.30 -0.23 -3.55 16 12 N -0.43 -4.41 3.20 -122.12 -0.39 -4.80 16 13 C 0.07 0.51 10.57 59.85 0.63 1.14 16 14 C -0.09 -1.26 2.14 -90.58 -0.19 -1.45 16 15 C -0.13 -1.96 4.81 -26.61 -0.13 -2.09 16 16 C 0.15 2.86 6.52 -3.71 -0.02 2.83 16 17 N -0.59 -14.12 2.95 -172.32 -0.51 -14.63 16 18 C -0.26 -6.94 9.50 -15.06 -0.14 -7.09 16 19 H 0.06 1.58 7.87 -52.49 -0.41 1.17 16 20 C 0.01 0.28 4.91 -17.43 -0.09 0.20 16 21 N -0.90 -25.73 11.66 55.49 0.65 -25.09 16 22 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.18 3.98 5.26 -3.71 -0.02 3.96 16 27 C -0.13 -2.32 4.96 -26.62 -0.13 -2.45 16 28 H 0.06 0.79 6.46 -51.93 -0.34 0.46 16 29 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.07 0.95 6.46 -51.93 -0.34 0.62 16 31 H 0.40 3.84 5.77 -40.82 -0.24 3.60 16 32 H 0.19 1.42 7.45 -52.49 -0.39 1.03 16 33 H 0.40 0.89 9.06 45.56 0.41 1.30 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.49 8.02 -51.93 -0.42 0.07 16 36 H 0.10 0.97 6.72 -51.92 -0.35 0.62 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 39 H 0.04 0.54 6.46 -51.93 -0.34 0.20 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.90 6.60 -51.93 -0.34 1.56 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.10 6.51 -51.93 -0.34 0.76 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -33.59 364.45 -7.88 -41.47 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.90 Total: 2.61 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.60 Total: 4.67 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.69 Total: -58.82 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.16 Total: -11.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.59 -7.88 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997711085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.775 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds