Wall clock time and date at job start Tue Mar 31 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 N 1.46497 * 109.47098 * 239.99733 * 2 1 3 5 5 C 1.34779 * 120.00058 * 84.99875 * 4 2 1 6 6 O 1.21735 * 120.00136 * 354.76639 * 5 4 2 7 7 C 1.46378 * 120.00040 * 174.76075 * 5 4 2 8 8 C 1.36723 * 126.82796 * 5.05792 * 7 5 4 9 9 N 1.33222 * 107.96485 * 179.86462 * 8 7 5 10 10 C 1.31541 * 109.75809 * 0.40432 * 9 8 7 11 11 O 1.35202 * 125.48878 * 179.76907 * 10 9 8 12 12 N 1.34942 * 109.01612 * 359.74291 * 10 9 8 13 13 C 1.46502 * 126.54066 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47259 * 119.99776 * 2 1 3 15 15 C 1.53045 * 109.45855 * 60.02760 * 14 2 1 16 16 C 1.53193 * 109.30998 * 178.60193 * 15 14 2 17 17 N 1.46925 * 108.76587 * 54.65709 * 16 15 14 18 18 C 1.36939 * 120.63208 * 126.40316 * 17 16 15 19 19 H 1.07996 * 120.00030 * 324.39658 * 18 17 16 20 20 C 1.38817 * 119.99852 * 144.39526 * 18 17 16 21 21 N 1.31616 * 119.99958 * 344.98400 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 164.97869 * 20 18 17 23 23 H 1.48504 * 109.47439 * 60.00082 * 22 20 18 24 24 H 1.48501 * 109.46989 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47256 * 300.00164 * 22 20 18 26 26 C 1.46931 * 118.73706 * 306.38162 * 17 16 15 27 27 C 1.53035 * 109.46052 * 299.97508 * 14 2 1 28 28 H 1.08995 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47079 * 59.99980 * 1 2 3 30 30 H 1.08998 * 109.47067 * 300.00407 * 1 2 3 31 31 H 0.97001 * 120.00180 * 265.00162 * 4 2 1 32 32 H 1.08001 * 126.01357 * 359.97438 * 8 7 5 33 33 H 0.96699 * 114.00353 * 269.97258 * 11 10 9 34 34 H 1.09003 * 109.47070 * 264.40998 * 13 12 10 35 35 H 1.08997 * 109.46938 * 24.41728 * 13 12 10 36 36 H 1.09007 * 109.46510 * 144.41162 * 13 12 10 37 37 H 1.08995 * 109.46373 * 179.97438 * 14 2 1 38 38 H 1.08999 * 109.49620 * 298.56338 * 15 14 2 39 39 H 1.08993 * 109.49768 * 58.66060 * 15 14 2 40 40 H 1.08991 * 109.60019 * 294.86279 * 16 15 14 41 41 H 1.09004 * 109.69668 * 174.50103 * 16 15 14 42 42 H 0.97002 * 119.99641 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.58301 * 293.81859 * 26 17 16 44 44 H 1.09001 * 109.70382 * 173.46753 * 26 17 16 45 45 H 1.09005 * 109.49683 * 301.33297 * 27 14 2 46 46 H 1.08998 * 109.50109 * 61.42834 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.7687 1.1359 -2.4373 7 6 2.7420 -0.6761 -3.5217 8 6 3.1233 -1.9856 -3.6174 9 7 3.6139 -2.1823 -4.8403 10 6 3.5705 -1.0587 -5.5229 11 8 3.9925 -0.8977 -6.7973 12 7 3.0364 -0.0929 -4.7465 13 6 2.8112 1.3046 -5.1239 14 6 2.0401 -0.7212 1.2493 15 6 1.5304 -2.1643 1.2487 16 6 2.0715 -2.8931 2.4826 17 7 1.7086 -2.1258 3.6819 18 6 1.0455 -2.7249 4.7194 19 1 0.3078 -3.4880 4.5200 20 6 1.3215 -2.3513 6.0276 21 7 2.4044 -1.6539 6.2983 22 14 0.1558 -2.8382 7.4036 23 1 0.0555 -4.3184 7.4669 24 1 0.6724 -2.3209 8.6962 25 1 -1.1875 -2.2617 7.1417 26 6 2.0712 -0.7034 3.7469 27 6 1.5304 0.0008 2.4986 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 2.2490 -1.6318 -1.1525 32 1 3.0397 -2.7298 -2.8393 33 1 4.9216 -0.6410 -6.8745 34 1 3.6509 1.9121 -4.7862 35 1 2.7219 1.3784 -6.2077 36 1 1.8929 1.6631 -4.6585 37 1 3.1300 -0.7215 1.2489 38 1 0.4407 -2.1652 1.2741 39 1 1.8741 -2.6711 0.3471 40 1 3.1564 -2.9725 2.4139 41 1 1.6352 -3.8903 2.5411 42 1 2.5974 -1.3932 7.2124 43 1 3.1561 -0.6041 3.7813 44 1 1.6346 -0.2532 4.6384 45 1 1.8742 1.0352 2.4868 46 1 0.4407 -0.0206 2.5121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997711085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:20 Heat of formation + Delta-G solvation = -20.604987 kcal Electronic energy + Delta-G solvation = -27659.881704 eV Core-core repulsion = 23778.479273 eV Total energy + Delta-G solvation = -3881.402431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32559 -40.91674 -39.37775 -38.32872 -36.80955 -35.22035 -34.43442 -32.95367 -31.52094 -30.82578 -29.61355 -28.08446 -27.09730 -25.29317 -24.26886 -23.67004 -22.77413 -21.98874 -21.21302 -20.13042 -19.67354 -18.72986 -18.35611 -17.64985 -17.19503 -16.82804 -16.55332 -15.88755 -15.73133 -15.61463 -15.42899 -15.28243 -15.17906 -14.70935 -14.56927 -14.08856 -14.04785 -13.76303 -13.69328 -13.54589 -13.19053 -12.97301 -12.93428 -12.85544 -12.57596 -12.46074 -12.16033 -11.97236 -11.61518 -11.60535 -11.42386 -11.13256 -10.96430 -10.91330 -10.87173 -10.51487 -10.18285 -9.56317 -8.52578 -7.84399 -5.37334 0.09533 1.09681 1.48140 1.50005 1.54499 1.56531 2.18603 2.25592 2.53009 2.80547 3.30100 3.55384 3.74974 3.79760 3.86372 3.92068 3.94404 4.09804 4.27047 4.32373 4.42212 4.47425 4.61127 4.64324 4.65969 4.78454 4.84879 4.91341 4.98208 5.02254 5.10312 5.21034 5.29012 5.31390 5.33028 5.37867 5.48311 5.50738 5.54523 5.58788 5.70820 5.83292 6.43589 6.46736 6.56404 6.69306 7.11298 7.20810 7.90889 8.46035 9.20412 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.002458 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.698941 B =11390.688774 C =11833.469656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.076 0.924 4 N -0.696 5.696 5 C 0.597 3.403 6 O -0.576 6.576 7 C -0.097 4.097 8 C 0.062 3.938 9 N -0.517 5.517 10 C 0.400 3.600 11 O -0.442 6.442 12 N -0.432 5.432 13 C 0.066 3.934 14 C -0.075 4.075 15 C -0.117 4.117 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.266 4.266 19 H 0.061 0.939 20 C -0.044 4.044 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.182 3.818 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.413 0.587 32 H 0.212 0.788 33 H 0.428 0.572 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.011 0.989 41 H 0.052 0.948 42 H 0.249 0.751 43 H -0.005 1.005 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 4.461 -24.082 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.095 0.905 4 N -0.348 5.348 5 C 0.385 3.615 6 O -0.458 6.458 7 C -0.213 4.213 8 C -0.092 4.092 9 N -0.247 5.247 10 C 0.101 3.899 11 O -0.246 6.246 12 N -0.125 5.125 13 C -0.075 4.075 14 C -0.094 4.094 15 C -0.156 4.156 16 C 0.014 3.986 17 N -0.332 5.332 18 C -0.396 4.396 19 H 0.079 0.921 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.200 1.200 24 H -0.222 1.222 25 H -0.203 1.203 26 C 0.056 3.944 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.228 0.772 33 H 0.290 0.710 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.013 0.987 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.765 4.652 -24.615 25.112 hybrid contribution 0.031 0.426 1.527 1.586 sum 1.795 5.079 -23.088 23.708 Atomic orbital electron populations 1.22183 0.94786 1.02793 1.01880 1.20874 0.94468 0.96165 0.82551 0.90547 1.45698 1.66173 1.14681 1.08249 1.16726 0.77627 0.85067 0.82090 1.90792 1.51949 1.18608 1.84425 1.20566 1.16390 0.95810 0.88560 1.23049 0.97777 0.93702 0.94721 1.70338 1.24222 1.24079 1.06030 1.20360 1.00047 0.83745 0.85785 1.84768 1.35425 1.89779 1.14636 1.45801 1.45104 1.11525 1.10058 1.22388 1.04794 0.76706 1.03632 1.21169 1.00027 0.95564 0.92607 1.21998 1.01046 0.94686 0.97883 1.21077 0.96092 0.94542 0.86841 1.44209 1.67020 1.05557 1.16418 1.19375 1.14457 1.20075 0.85725 0.92106 1.25961 0.97497 1.00706 0.99867 1.70159 1.25553 1.43124 1.18941 0.85430 0.78874 0.78248 0.78390 1.19998 1.22213 1.20344 1.20455 0.94815 0.84033 0.95057 1.22045 1.00817 0.98418 0.94798 0.91391 0.93176 0.91315 0.74813 0.77164 0.70982 0.88957 0.86896 0.89332 0.91309 0.91718 0.89616 0.97055 0.92979 0.94173 0.98708 0.94434 0.91692 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 8.78 71.98 0.63 -3.12 16 2 C 0.16 3.89 2.36 44.99 0.11 4.00 16 3 H 0.08 2.02 7.66 -2.38 -0.02 2.00 16 4 N -0.70 -14.10 4.98 -446.76 -2.23 -16.32 16 5 C 0.60 13.94 7.73 86.36 0.67 14.61 16 6 O -0.58 -16.67 14.68 -4.46 -0.07 -16.73 16 7 C -0.10 -2.03 6.92 39.80 0.28 -1.75 16 8 C 0.06 1.17 11.36 84.13 0.96 2.13 16 9 N -0.52 -11.31 11.22 -313.65 -3.52 -14.83 16 10 C 0.40 7.49 9.00 179.99 1.62 9.11 16 11 O -0.44 -5.54 13.44 -84.83 -1.14 -6.68 16 12 N -0.43 -8.09 3.20 -651.99 -2.09 -10.18 16 13 C 0.07 0.90 10.57 127.77 1.35 2.25 16 14 C -0.07 -2.06 2.14 -10.77 -0.02 -2.08 16 15 C -0.12 -3.24 4.81 30.67 0.15 -3.10 16 16 C 0.14 5.34 6.52 86.36 0.56 5.90 16 17 N -0.61 -29.38 2.95 -699.10 -2.06 -31.44 16 18 C -0.27 -14.34 9.50 84.03 0.80 -13.55 16 19 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 20 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 21 N -0.93 -55.06 11.66 21.65 0.25 -54.81 16 22 Si 0.96 44.41 29.58 68.60 2.03 46.44 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.18 8.44 5.26 86.36 0.45 8.89 16 27 C -0.12 -4.14 4.96 30.67 0.15 -3.99 16 28 H 0.07 1.54 6.46 -2.39 -0.02 1.52 16 29 H 0.05 1.23 8.09 -2.39 -0.02 1.22 16 30 H 0.07 1.68 6.46 -2.39 -0.02 1.67 16 31 H 0.41 6.44 5.77 -92.71 -0.54 5.90 16 32 H 0.21 2.53 7.45 -2.91 -0.02 2.51 16 33 H 0.43 0.70 9.06 -74.06 -0.67 0.03 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.96 8.02 -2.39 -0.02 0.94 16 36 H 0.09 1.55 6.72 -2.38 -0.02 1.54 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.86 6.51 -2.39 -0.02 1.84 16 39 H 0.09 1.70 6.46 -2.39 -0.02 1.69 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.04 1.98 6.60 -2.39 -0.02 1.97 16 45 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.06 2.14 6.51 -2.39 -0.02 2.13 16 Total: -1.00 -73.94 364.45 -0.89 -74.83 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.18 Total: 12.45 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 8.12 Total: 17.28 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -9.64 Total: -127.58 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.21 Total: -23.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.94 -0.89 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997711085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.220 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds