Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47331 * 2 1 4 4 N 1.46499 * 109.47223 * 240.00322 * 2 1 3 5 5 C 1.34771 * 120.00291 * 85.00001 * 4 2 1 6 6 O 1.21635 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.47251 * 120.00004 * 180.02562 * 5 4 2 8 8 C 1.36250 * 126.16710 * 179.97438 * 7 5 4 9 9 N 1.36339 * 106.88895 * 180.02562 * 8 7 5 10 10 C 1.46493 * 126.20007 * 180.02562 * 9 8 7 11 11 C 1.36172 * 107.60146 * 0.02562 * 9 8 7 12 12 O 1.35460 * 125.54921 * 180.02562 * 11 9 8 13 13 N 1.30697 * 108.89922 * 359.97438 * 11 9 8 14 14 C 1.53000 * 109.47203 * 119.99646 * 2 1 3 15 15 C 1.53042 * 109.45787 * 60.03167 * 14 2 1 16 16 C 1.53195 * 109.30801 * 178.60113 * 15 14 2 17 17 N 1.46917 * 108.76899 * 54.65733 * 16 15 14 18 18 C 1.36938 * 120.63522 * 126.40405 * 17 16 15 19 19 H 1.08002 * 119.99447 * 331.81837 * 18 17 16 20 20 C 1.38811 * 120.00025 * 151.81942 * 18 17 16 21 21 N 1.31616 * 120.00016 * 343.08403 * 20 18 17 22 22 Si 1.86805 * 119.99826 * 163.07949 * 20 18 17 23 23 H 1.48502 * 109.47239 * 59.99804 * 22 20 18 24 24 H 1.48494 * 109.46924 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 299.99950 * 22 20 18 26 26 C 1.46928 * 118.73743 * 306.38054 * 17 16 15 27 27 C 1.53040 * 109.46198 * 299.97263 * 14 2 1 28 28 H 1.08995 * 109.47261 * 60.00111 * 1 2 3 29 29 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 300.00219 * 1 2 3 31 31 H 0.97003 * 119.99556 * 264.99513 * 4 2 1 32 32 H 1.07994 * 126.55029 * 0.04087 * 8 7 5 33 33 H 1.08999 * 109.47267 * 89.99766 * 10 9 8 34 34 H 1.08999 * 109.47595 * 209.99918 * 10 9 8 35 35 H 1.09005 * 109.47348 * 330.00303 * 10 9 8 36 36 H 0.96693 * 114.00256 * 269.97450 * 12 11 9 37 37 H 1.09000 * 109.46079 * 180.02562 * 14 2 1 38 38 H 1.09004 * 109.49428 * 298.56069 * 15 14 2 39 39 H 1.08996 * 109.49801 * 58.65855 * 15 14 2 40 40 H 1.08998 * 109.60075 * 294.85983 * 16 15 14 41 41 H 1.09007 * 109.69695 * 174.50665 * 16 15 14 42 42 H 0.97007 * 119.99789 * 180.02562 * 21 20 18 43 43 H 1.09008 * 109.58495 * 293.82240 * 26 17 16 44 44 H 1.08994 * 109.70774 * 173.46641 * 26 17 16 45 45 H 1.08998 * 109.49906 * 301.34047 * 27 14 2 46 46 H 1.08998 * 109.49504 * 61.43485 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8574 1.1619 -2.4118 7 6 2.6374 -0.7125 -3.5595 8 6 2.8146 -0.1587 -4.7917 9 7 3.2796 -1.1474 -5.6072 10 6 3.6135 -1.0122 -7.0272 11 6 3.3776 -2.2833 -4.8626 12 8 3.8040 -3.4869 -5.3146 13 7 2.9943 -2.0227 -3.6406 14 6 2.0400 -0.7212 1.2493 15 6 1.5304 -2.1642 1.2487 16 6 2.0715 -2.8931 2.4827 17 7 1.7086 -2.1258 3.6819 18 6 1.0455 -2.7249 4.7194 19 1 0.3979 -3.5684 4.5311 20 6 1.2059 -2.2482 6.0132 21 7 2.2201 -1.4613 6.3036 22 14 -0.0181 -2.7233 7.3420 23 1 -0.0266 -4.1996 7.5022 24 1 0.3735 -2.0878 8.6257 25 1 -1.3746 -2.2596 6.9543 26 6 2.0711 -0.7034 3.7469 27 6 1.5303 0.0009 2.4987 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2491 -1.6317 -1.1526 32 1 2.6234 0.8674 -5.0692 33 1 4.6617 -0.7312 -7.1289 34 1 3.4413 -1.9623 -7.5330 35 1 2.9858 -0.2425 -7.4764 36 1 3.0980 -4.0495 -5.6612 37 1 3.1300 -0.7207 1.2493 38 1 0.4406 -2.1652 1.2741 39 1 1.8741 -2.6711 0.3470 40 1 3.1564 -2.9724 2.4140 41 1 1.6353 -3.8904 2.5411 42 1 2.3323 -1.1284 7.2078 43 1 3.1561 -0.6041 3.7814 44 1 1.6346 -0.2533 4.6384 45 1 1.8740 1.0352 2.4868 46 1 0.4406 -0.0207 2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997738134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = 6.720517 kcal Electronic energy + Delta-G solvation = -27452.551059 eV Core-core repulsion = 23572.333551 eV Total energy + Delta-G solvation = -3880.217508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50396 -39.65220 -37.98522 -37.55847 -35.18020 -34.59292 -32.70716 -31.10403 -29.76830 -29.42867 -28.77226 -27.57978 -25.38105 -24.04095 -22.81676 -22.13991 -21.77451 -20.56372 -19.98880 -18.96955 -18.50642 -17.75141 -16.72565 -16.52732 -16.02600 -15.76366 -14.90611 -14.79777 -14.69233 -14.65873 -14.14791 -13.97525 -13.65342 -13.47712 -13.35513 -13.14982 -12.91861 -12.51335 -12.39328 -12.33017 -12.02740 -11.54796 -11.30049 -11.15351 -10.83632 -10.65002 -10.63712 -10.35102 -10.18753 -10.10332 -10.06170 -9.99913 -9.78650 -9.41234 -9.31253 -8.96437 -8.70865 -8.39451 -6.58379 -5.71878 -3.13919 1.23711 1.80573 2.03136 3.12475 3.42772 3.44981 3.48416 3.49784 3.59009 4.15451 4.27988 4.53690 4.55589 4.81707 4.82860 5.08531 5.20124 5.27428 5.46507 5.47258 5.48408 5.63206 5.78141 5.84962 5.90989 5.98391 6.11891 6.16898 6.22994 6.27655 6.38189 6.49023 6.57824 6.68739 6.74719 6.84210 6.88651 6.92732 7.10003 7.10970 7.30019 7.46901 7.74534 7.77154 7.85943 8.35283 8.52760 9.28991 9.92870 10.50228 11.36540 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002476 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.476402 B =11305.030445 C =11911.086992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.601 3.399 6 O -0.548 6.548 7 C -0.043 4.043 8 C 0.041 3.959 9 N -0.465 5.465 10 C 0.071 3.929 11 C 0.377 3.623 12 O -0.439 6.439 13 N -0.452 5.452 14 C -0.085 4.085 15 C -0.129 4.129 16 C 0.146 3.854 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.196 0.804 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.016 0.984 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 1.159 -28.097 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.102 0.898 4 N -0.355 5.355 5 C 0.387 3.613 6 O -0.426 6.426 7 C -0.172 4.172 8 C -0.097 4.097 9 N -0.160 5.160 10 C -0.072 4.072 11 C 0.076 3.924 12 O -0.239 6.239 13 N -0.182 5.182 14 C -0.104 4.104 15 C -0.168 4.168 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.081 0.919 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.213 0.787 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.259 0.741 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.479 1.568 -27.271 27.356 hybrid contribution -0.715 -0.488 -0.296 0.915 sum 0.763 1.080 -27.566 27.598 Atomic orbital electron populations 1.22223 0.95339 1.02374 1.02029 1.21161 0.94262 0.96965 0.83508 0.89775 1.46052 1.65555 1.14757 1.09122 1.16812 0.77214 0.85509 0.81788 1.90792 1.51877 1.15034 1.84919 1.20540 1.10943 0.90727 0.94995 1.22649 1.01671 0.95073 0.90268 1.45837 1.49281 1.09835 1.11043 1.22116 1.02962 1.04692 0.77398 1.20285 1.03602 0.82698 0.85827 1.84922 1.35893 1.21886 1.81195 1.70897 1.16269 1.14942 1.16116 1.21317 1.00093 0.95782 0.93204 1.22115 1.01121 0.95063 0.98548 1.20879 0.96200 0.94249 0.86719 1.44032 1.66805 1.05100 1.15507 1.19138 1.18954 1.14291 0.85610 0.91852 1.25037 0.97108 1.00559 0.97033 1.70026 1.27888 1.37622 1.19273 0.86385 0.81258 0.78052 0.81164 1.20960 1.21702 1.21080 1.20758 0.96379 0.83727 0.94557 1.22257 1.00971 0.97954 0.96119 0.92984 0.92118 0.91044 0.75512 0.78743 0.89932 0.89243 0.88974 0.74128 0.91402 0.91753 0.93512 0.96638 0.92955 0.93653 0.96571 0.89506 0.93192 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.78 37.16 0.33 -2.04 16 2 C 0.14 2.22 2.40 -67.93 -0.16 2.06 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.70 -10.28 4.99 -54.94 -0.27 -10.56 16 5 C 0.60 9.01 7.77 -12.60 -0.10 8.92 16 6 O -0.55 -9.38 16.54 5.25 0.09 -9.29 16 7 C -0.04 -0.55 6.97 -83.05 -0.58 -1.13 16 8 C 0.04 0.39 11.29 -16.26 -0.18 0.20 16 9 N -0.47 -3.55 3.16 -125.78 -0.40 -3.95 16 10 C 0.07 0.20 11.11 59.84 0.66 0.87 16 11 C 0.38 3.73 9.03 -89.17 -0.81 2.93 16 12 O -0.44 -3.22 13.55 -18.07 -0.24 -3.46 16 13 N -0.45 -5.80 11.03 -11.21 -0.12 -5.93 16 14 C -0.08 -1.44 2.14 -90.58 -0.19 -1.64 16 15 C -0.13 -2.24 4.81 -26.61 -0.13 -2.37 16 16 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 17 N -0.59 -14.97 2.99 -172.32 -0.52 -15.48 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 19 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -26.57 11.19 55.49 0.62 -25.95 16 22 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 27 C -0.13 -2.55 4.97 -26.61 -0.13 -2.68 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.88 6.46 -51.93 -0.34 0.55 16 30 H 0.07 1.04 6.46 -51.93 -0.34 0.71 16 31 H 0.41 5.77 6.55 -40.82 -0.27 5.51 16 32 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 36 H 0.40 0.83 9.06 45.56 0.41 1.24 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.15 6.51 -51.93 -0.34 0.81 16 39 H 0.05 0.71 6.46 -51.93 -0.34 0.37 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.18 6.51 -51.93 -0.34 0.84 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -35.18 368.93 -7.90 -43.08 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.01 Total: 3.89 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.57 Total: 5.16 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.69 Total: -61.87 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.16 Total: -12.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.18 -7.90 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997738134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.798 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds