Wall clock time and date at job start Tue Mar 31 2020 15:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47331 * 2 1 4 4 N 1.46499 * 109.47223 * 240.00322 * 2 1 3 5 5 C 1.34771 * 120.00291 * 85.00001 * 4 2 1 6 6 O 1.21635 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.47251 * 120.00004 * 180.02562 * 5 4 2 8 8 C 1.36250 * 126.16710 * 179.97438 * 7 5 4 9 9 N 1.36339 * 106.88895 * 180.02562 * 8 7 5 10 10 C 1.46493 * 126.20007 * 180.02562 * 9 8 7 11 11 C 1.36172 * 107.60146 * 0.02562 * 9 8 7 12 12 O 1.35460 * 125.54921 * 180.02562 * 11 9 8 13 13 N 1.30697 * 108.89922 * 359.97438 * 11 9 8 14 14 C 1.53000 * 109.47203 * 119.99646 * 2 1 3 15 15 C 1.53042 * 109.45787 * 60.03167 * 14 2 1 16 16 C 1.53195 * 109.30801 * 178.60113 * 15 14 2 17 17 N 1.46917 * 108.76899 * 54.65733 * 16 15 14 18 18 C 1.36938 * 120.63522 * 126.40405 * 17 16 15 19 19 H 1.08002 * 119.99447 * 331.81837 * 18 17 16 20 20 C 1.38811 * 120.00025 * 151.81942 * 18 17 16 21 21 N 1.31616 * 120.00016 * 343.08403 * 20 18 17 22 22 Si 1.86805 * 119.99826 * 163.07949 * 20 18 17 23 23 H 1.48502 * 109.47239 * 59.99804 * 22 20 18 24 24 H 1.48494 * 109.46924 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 299.99950 * 22 20 18 26 26 C 1.46928 * 118.73743 * 306.38054 * 17 16 15 27 27 C 1.53040 * 109.46198 * 299.97263 * 14 2 1 28 28 H 1.08995 * 109.47261 * 60.00111 * 1 2 3 29 29 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47084 * 300.00219 * 1 2 3 31 31 H 0.97003 * 119.99556 * 264.99513 * 4 2 1 32 32 H 1.07994 * 126.55029 * 0.04087 * 8 7 5 33 33 H 1.08999 * 109.47267 * 89.99766 * 10 9 8 34 34 H 1.08999 * 109.47595 * 209.99918 * 10 9 8 35 35 H 1.09005 * 109.47348 * 330.00303 * 10 9 8 36 36 H 0.96693 * 114.00256 * 269.97450 * 12 11 9 37 37 H 1.09000 * 109.46079 * 180.02562 * 14 2 1 38 38 H 1.09004 * 109.49428 * 298.56069 * 15 14 2 39 39 H 1.08996 * 109.49801 * 58.65855 * 15 14 2 40 40 H 1.08998 * 109.60075 * 294.85983 * 16 15 14 41 41 H 1.09007 * 109.69695 * 174.50665 * 16 15 14 42 42 H 0.97007 * 119.99789 * 180.02562 * 21 20 18 43 43 H 1.09008 * 109.58495 * 293.82240 * 26 17 16 44 44 H 1.08994 * 109.70774 * 173.46641 * 26 17 16 45 45 H 1.08998 * 109.49906 * 301.34047 * 27 14 2 46 46 H 1.08998 * 109.49504 * 61.43485 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8574 1.1619 -2.4118 7 6 2.6374 -0.7125 -3.5595 8 6 2.8146 -0.1587 -4.7917 9 7 3.2796 -1.1474 -5.6072 10 6 3.6135 -1.0122 -7.0272 11 6 3.3776 -2.2833 -4.8626 12 8 3.8040 -3.4869 -5.3146 13 7 2.9943 -2.0227 -3.6406 14 6 2.0400 -0.7212 1.2493 15 6 1.5304 -2.1642 1.2487 16 6 2.0715 -2.8931 2.4827 17 7 1.7086 -2.1258 3.6819 18 6 1.0455 -2.7249 4.7194 19 1 0.3979 -3.5684 4.5311 20 6 1.2059 -2.2482 6.0132 21 7 2.2201 -1.4613 6.3036 22 14 -0.0181 -2.7233 7.3420 23 1 -0.0266 -4.1996 7.5022 24 1 0.3735 -2.0878 8.6257 25 1 -1.3746 -2.2596 6.9543 26 6 2.0711 -0.7034 3.7469 27 6 1.5303 0.0009 2.4987 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2491 -1.6317 -1.1526 32 1 2.6234 0.8674 -5.0692 33 1 4.6617 -0.7312 -7.1289 34 1 3.4413 -1.9623 -7.5330 35 1 2.9858 -0.2425 -7.4764 36 1 3.0980 -4.0495 -5.6612 37 1 3.1300 -0.7207 1.2493 38 1 0.4406 -2.1652 1.2741 39 1 1.8741 -2.6711 0.3470 40 1 3.1564 -2.9724 2.4140 41 1 1.6353 -3.8904 2.5411 42 1 2.3323 -1.1284 7.2078 43 1 3.1561 -0.6041 3.7814 44 1 1.6346 -0.2533 4.6384 45 1 1.8740 1.0352 2.4868 46 1 0.4406 -0.0207 2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997738134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:26 Heat of formation + Delta-G solvation = -20.753514 kcal Electronic energy + Delta-G solvation = -27453.742423 eV Core-core repulsion = 23572.333551 eV Total energy + Delta-G solvation = -3881.408871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.20743 -40.87091 -39.37897 -38.23672 -36.75631 -35.23134 -34.36604 -32.76081 -31.42414 -30.54382 -29.96721 -28.09287 -27.11964 -25.31837 -24.23123 -23.68269 -22.47210 -22.01646 -21.12418 -20.16178 -19.52388 -18.72021 -18.42733 -17.41239 -17.11748 -16.62985 -16.61476 -15.90746 -15.69747 -15.59092 -15.37551 -15.28743 -15.23843 -14.87773 -14.63745 -14.11033 -14.06976 -13.68955 -13.54751 -13.41952 -13.02185 -12.95044 -12.90346 -12.85781 -12.56142 -12.45969 -12.13845 -11.94677 -11.64350 -11.61209 -11.45659 -11.19783 -10.99846 -10.91970 -10.82951 -10.49565 -10.08847 -9.55595 -8.64115 -7.84138 -5.29505 0.48141 1.08001 1.40945 1.48100 1.50790 1.57461 2.18461 2.45113 2.53761 2.82725 3.29931 3.62473 3.71934 3.78503 3.87258 3.90268 4.08656 4.11698 4.38391 4.40503 4.41230 4.45664 4.62890 4.63863 4.71156 4.74560 4.84462 4.88376 4.95500 4.98567 5.06616 5.17714 5.25409 5.26283 5.29984 5.35104 5.45080 5.56163 5.59667 5.64845 5.69437 5.82872 6.42470 6.44142 6.63172 6.75274 7.18268 7.24391 7.90230 8.42435 9.22047 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002476 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.476402 B =11305.030445 C =11911.086992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.076 0.924 4 N -0.703 5.703 5 C 0.601 3.399 6 O -0.576 6.576 7 C -0.082 4.082 8 C 0.060 3.940 9 N -0.455 5.455 10 C 0.061 3.939 11 C 0.378 3.622 12 O -0.442 6.442 13 N -0.490 5.490 14 C -0.075 4.075 15 C -0.115 4.115 16 C 0.141 3.859 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.178 3.822 27 C -0.120 4.120 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.410 0.590 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.425 0.575 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.009 0.991 41 H 0.054 0.946 42 H 0.249 0.751 43 H -0.009 1.009 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 0.705 -30.993 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.095 0.905 4 N -0.353 5.353 5 C 0.388 3.612 6 O -0.457 6.457 7 C -0.210 4.210 8 C -0.079 4.079 9 N -0.148 5.148 10 C -0.079 4.079 11 C 0.076 3.924 12 O -0.246 6.246 13 N -0.221 5.221 14 C -0.094 4.094 15 C -0.153 4.153 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.204 1.204 26 C 0.052 3.948 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.235 0.765 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.285 0.715 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.798 1.068 -30.233 30.262 hybrid contribution -0.414 -0.428 0.470 0.759 sum 0.384 0.640 -29.763 29.772 Atomic orbital electron populations 1.22159 0.94549 1.02551 1.02051 1.20909 0.94689 0.96233 0.83008 0.90547 1.45972 1.65675 1.14758 1.08927 1.17108 0.76497 0.85240 0.82311 1.90762 1.53286 1.16152 1.85464 1.20312 1.13958 0.91418 0.95322 1.22985 0.99592 0.95986 0.89380 1.46047 1.47774 1.08547 1.12478 1.22524 1.03954 1.06729 0.74677 1.20341 1.02553 0.83845 0.85647 1.84885 1.37173 1.21384 1.81140 1.70757 1.17926 1.15209 1.18179 1.21161 0.99563 0.95567 0.93112 1.21946 1.00972 0.94874 0.97548 1.21038 0.95962 0.94568 0.86860 1.44305 1.66912 1.05860 1.16200 1.19487 1.18899 1.14237 0.86495 0.91606 1.25813 0.98749 1.01067 0.99178 1.70190 1.29627 1.39094 1.19358 0.85346 0.79079 0.77916 0.78133 1.20130 1.22145 1.20365 1.20569 0.94722 0.83865 0.95659 1.22050 1.00837 0.98430 0.94645 0.92909 0.91813 0.91041 0.75232 0.76541 0.89151 0.87320 0.86702 0.71452 0.92136 0.91603 0.90817 0.97318 0.92791 0.94180 0.99060 0.92792 0.91607 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 8.78 71.98 0.63 -3.70 16 2 C 0.16 4.63 2.40 44.99 0.11 4.74 16 3 H 0.08 2.44 7.58 -2.38 -0.02 2.42 16 4 N -0.70 -19.93 4.99 -445.96 -2.23 -22.16 16 5 C 0.60 17.63 7.77 86.61 0.67 18.31 16 6 O -0.58 -19.39 16.54 -4.14 -0.07 -19.46 16 7 C -0.08 -2.03 6.97 40.40 0.28 -1.74 16 8 C 0.06 1.02 11.29 83.53 0.94 1.96 16 9 N -0.46 -5.71 3.16 -662.76 -2.09 -7.80 16 10 C 0.06 0.13 11.11 127.77 1.42 1.55 16 11 C 0.38 6.73 9.03 179.84 1.62 8.35 16 12 O -0.44 -5.43 13.55 -87.58 -1.19 -6.62 16 13 N -0.49 -12.02 11.03 -303.15 -3.34 -15.37 16 14 C -0.07 -2.50 2.14 -10.77 -0.02 -2.52 16 15 C -0.11 -3.84 4.81 30.67 0.15 -3.69 16 16 C 0.14 5.99 6.52 86.37 0.56 6.55 16 17 N -0.61 -31.32 2.99 -699.10 -2.09 -33.41 16 18 C -0.26 -14.64 9.58 84.03 0.81 -13.84 16 19 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 20 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 21 N -0.94 -56.73 11.19 21.65 0.24 -56.49 16 22 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.18 8.81 5.30 86.36 0.46 9.27 16 27 C -0.12 -4.58 4.97 30.67 0.15 -4.43 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 30 H 0.07 1.99 6.46 -2.39 -0.02 1.97 16 31 H 0.41 11.20 6.55 -92.71 -0.61 10.59 16 32 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.11 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H 0.42 0.63 9.06 -74.06 -0.67 -0.04 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 2.23 6.51 -2.38 -0.02 2.21 16 39 H 0.07 2.10 6.46 -2.39 -0.02 2.09 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.05 2.24 7.93 -2.38 -0.02 2.22 16 42 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 43 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 44 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 2.41 6.51 -2.39 -0.02 2.39 16 Total: -1.00 -77.84 368.93 -0.80 -78.64 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.26 Total: 16.74 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 8.20 Total: 18.20 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -9.52 Total: -135.22 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.26 Total: -26.08 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.84 -0.80 -78.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997738134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.885 kcal (2) G-P(sol) polarization free energy of solvation -77.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds