Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 N 1.46496 * 109.47437 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19519 * 270.17639 * 4 3 2 6 6 C 1.30858 * 110.92963 * 180.27697 * 5 4 3 7 7 C 1.39669 * 107.86191 * 359.71257 * 6 5 4 8 8 C 1.36603 * 125.18861 * 89.96288 * 4 3 2 9 9 C 1.47164 * 126.88472 * 359.97438 * 8 4 3 10 10 O 1.21636 * 119.99676 * 353.02367 * 9 8 4 11 11 N 1.34774 * 119.99834 * 173.02633 * 9 8 4 12 12 C 1.46501 * 119.99415 * 185.36216 * 11 9 8 13 13 C 1.53008 * 109.46631 * 179.97438 * 12 11 9 14 14 H 1.08993 * 109.51245 * 304.89892 * 13 12 11 15 15 C 1.52879 * 109.61958 * 184.90999 * 13 12 11 16 16 N 1.47160 * 108.60628 * 187.89948 * 15 13 12 17 17 C 1.36937 * 120.98069 * 230.50087 * 16 15 13 18 18 H 1.07993 * 120.00013 * 33.53227 * 17 16 15 19 19 C 1.38810 * 119.99579 * 213.52838 * 17 16 15 20 20 N 1.31619 * 120.00409 * 10.62709 * 19 17 16 21 21 Si 1.86806 * 119.99693 * 190.34988 * 19 17 16 22 22 H 1.48500 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46733 * 120.00249 * 21 19 17 24 24 H 1.48495 * 109.47285 * 240.00282 * 21 19 17 25 25 C 1.47157 * 118.03336 * 50.22404 * 16 15 13 26 26 C 1.53295 * 108.38568 * 309.71910 * 25 16 15 27 27 O 1.42961 * 109.51093 * 65.00440 * 13 12 11 28 28 H 1.08998 * 109.46888 * 59.99982 * 1 2 3 29 29 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99713 * 1 2 3 31 31 H 1.08999 * 109.47507 * 240.00499 * 2 1 3 32 32 H 1.09003 * 109.47127 * 119.99614 * 2 1 3 33 33 H 1.09006 * 109.47192 * 59.99931 * 3 2 1 34 34 H 1.08995 * 109.47228 * 300.00296 * 3 2 1 35 35 H 1.08000 * 126.07162 * 179.67812 * 6 5 4 36 36 H 1.08002 * 127.31965 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00122 * 5.36512 * 11 9 8 38 38 H 1.09004 * 109.47047 * 60.00616 * 12 11 9 39 39 H 1.08998 * 109.47601 * 299.99912 * 12 11 9 40 40 H 1.08999 * 109.62170 * 68.07938 * 15 13 12 41 41 H 1.09002 * 109.52811 * 307.66270 * 15 13 12 42 42 H 0.96996 * 119.99830 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.67831 * 69.44523 * 25 16 15 44 44 H 1.08996 * 109.67617 * 189.95492 * 25 16 15 45 45 H 1.08998 * 109.51182 * 172.22789 * 26 25 16 46 46 H 1.08996 * 109.51040 * 292.32620 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2448 1.4396 1.0506 6 6 5.5132 1.4465 0.7287 7 6 5.6014 1.4482 -0.6652 8 6 4.2927 1.4418 -1.1155 9 6 3.8403 1.4401 -2.5158 10 8 2.6584 1.3114 -2.7730 11 7 4.7355 1.5812 -3.5133 12 6 4.2754 1.6975 -4.8994 13 6 5.4833 1.8468 -5.8267 14 1 6.0909 2.6906 -5.5001 15 6 5.0045 2.0908 -7.2580 16 7 6.1683 2.0413 -8.1573 17 6 6.4035 3.0424 -9.0615 18 1 6.1401 4.0614 -8.8195 19 6 6.9805 2.7474 -10.2890 20 7 7.1098 1.4946 -10.6714 21 14 7.5665 4.1287 -11.4017 22 1 7.3040 5.4360 -10.7480 23 1 9.0238 3.9823 -11.6469 24 1 6.8383 4.0660 -12.6943 25 6 7.0752 0.8872 -8.0518 26 6 7.4559 0.7045 -6.5782 27 8 6.2660 0.6512 -5.7877 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.3443 1.4508 1.4184 36 1 6.4999 1.4538 -1.2644 37 1 5.6844 1.6056 -3.3136 38 1 3.6328 2.5726 -4.9966 39 1 3.7154 0.8032 -5.1727 40 1 4.5313 3.0705 -7.3236 41 1 4.2896 1.3177 -7.5398 42 1 7.5126 1.2885 -11.5293 43 1 6.5724 -0.0091 -8.4149 44 1 7.9722 1.0701 -8.6434 45 1 8.0143 -0.2239 -6.4588 46 1 8.0716 1.5437 -6.2545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035383784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = 13.718442 kcal Electronic energy + Delta-G solvation = -27285.121004 eV Core-core repulsion = 23405.206949 eV Total energy + Delta-G solvation = -3879.914055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.71550 -39.54916 -38.43262 -35.80140 -34.90883 -34.32228 -32.01089 -31.68540 -31.19612 -30.35489 -27.57301 -26.77617 -25.68204 -23.42356 -23.07648 -22.34259 -22.00959 -21.24925 -20.23059 -19.56979 -18.21271 -16.92278 -16.33771 -16.28429 -15.93147 -15.73560 -15.43246 -15.06563 -14.78376 -14.47212 -14.42238 -14.12219 -13.88432 -13.46807 -13.41101 -13.25596 -13.11537 -12.78543 -12.48158 -12.39832 -12.29302 -11.68610 -11.61208 -11.13434 -11.11832 -10.98670 -10.92835 -10.77414 -10.45596 -10.29986 -10.18229 -10.11880 -9.69436 -9.44847 -9.23689 -9.09606 -9.03505 -8.61216 -6.70599 -5.89627 -3.41819 1.10648 2.17667 2.43242 3.09407 3.12380 3.29706 3.37714 3.39562 4.15785 4.28641 4.37547 4.47925 4.54015 4.72632 4.85649 4.96948 5.06863 5.12221 5.23784 5.29435 5.37345 5.40414 5.43044 5.47514 5.53785 5.68641 5.74308 5.77587 5.80650 5.91718 5.96505 6.09112 6.21111 6.28186 6.32535 6.39979 6.44531 6.53798 6.71793 7.03180 7.35788 7.46146 7.68050 7.78981 7.86218 8.04052 8.33224 9.07406 9.67415 10.28279 11.18462 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.002408 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.852187 B =11624.839701 C =12070.174651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.118 3.882 4 N -0.255 5.255 5 N -0.280 5.280 6 C -0.005 4.005 7 C -0.189 4.189 8 C -0.034 4.034 9 C 0.587 3.413 10 O -0.542 6.542 11 N -0.702 5.702 12 C 0.132 3.868 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.592 5.592 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.009 3.991 20 N -0.901 5.901 21 Si 0.906 3.094 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.142 3.858 26 C 0.039 3.961 27 O -0.389 6.389 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.407 0.593 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.255 0.745 43 H 0.030 0.970 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 -1.100 21.116 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.002 4.002 4 N -0.043 5.043 5 N -0.113 5.113 6 C -0.180 4.180 7 C -0.218 4.218 8 C -0.163 4.163 9 C 0.372 3.628 10 O -0.421 6.421 11 N -0.353 5.353 12 C 0.009 3.991 13 C 0.004 3.996 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.316 5.316 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.215 1.215 25 C 0.017 3.983 26 C -0.039 4.039 27 O -0.308 6.308 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.203 0.797 36 H 0.179 0.821 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.039 -1.379 21.733 22.887 hybrid contribution 1.612 0.792 -1.444 2.304 sum -5.427 -0.587 20.289 21.011 Atomic orbital electron populations 1.21656 0.93968 1.02527 1.02289 1.21816 0.97109 0.95025 1.03284 1.22270 0.72454 0.99896 1.05568 1.45818 1.07643 1.49216 1.01615 1.73191 1.04372 1.19859 1.13845 1.23562 0.93460 1.06038 0.94984 1.22302 0.95687 1.08194 0.95667 1.21474 0.91503 1.13454 0.89832 1.16906 0.85771 0.77046 0.83062 1.90791 1.16455 1.50363 1.84462 1.45638 1.10103 1.73002 1.06560 1.21500 0.96270 1.03146 0.78204 1.22735 0.91691 0.88188 0.96950 0.92288 1.21373 0.91061 0.99946 0.88147 1.43960 1.23325 1.23646 1.40707 1.19164 1.38737 0.87487 0.93596 0.91647 1.25264 1.01229 0.96187 0.96382 1.69994 1.46655 1.16578 1.21136 0.86176 0.78198 0.81527 0.80573 1.20114 1.21445 1.21465 1.21372 0.95920 0.90126 0.90895 1.23331 0.85785 1.00334 0.94407 1.87794 1.36797 1.36691 1.69567 0.91847 0.91928 0.92477 0.90693 0.91414 0.88562 0.86771 0.79707 0.82123 0.75817 0.89834 0.90204 0.91742 0.95213 0.93454 0.95165 0.89533 0.90007 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.25 6.26 -26.73 -0.17 -1.41 16 3 C 0.12 1.17 5.72 -4.04 -0.02 1.15 16 4 N -0.26 -3.04 3.35 -57.14 -0.19 -3.23 16 5 N -0.28 -3.33 11.90 30.59 0.36 -2.97 16 6 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.19 -1.93 10.50 -38.99 -0.41 -2.34 16 8 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 9 C 0.59 7.93 7.78 -12.64 -0.10 7.83 16 10 O -0.54 -8.45 14.81 5.25 0.08 -8.37 16 11 N -0.70 -8.87 5.49 -61.46 -0.34 -9.21 16 12 C 0.13 1.87 5.35 -4.04 -0.02 1.85 16 13 C 0.06 1.06 2.80 -26.79 -0.07 0.99 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.12 2.45 6.00 -3.74 -0.02 2.43 16 16 N -0.59 -14.42 3.02 -172.08 -0.52 -14.94 16 17 C -0.26 -6.92 9.59 -15.06 -0.14 -7.06 16 18 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 19 C 0.01 0.25 5.05 -17.43 -0.09 0.16 16 20 N -0.90 -25.51 11.33 55.49 0.63 -24.88 16 21 Si 0.91 21.02 29.57 -169.99 -5.03 16.00 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.14 3.29 5.37 -3.53 -0.02 3.27 16 26 C 0.04 0.72 6.98 37.31 0.26 0.98 16 27 O -0.39 -6.95 10.33 -35.23 -0.36 -7.31 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.22 6.48 -51.93 -0.34 0.88 16 35 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.16 1.24 7.59 -52.49 -0.40 0.84 16 37 H 0.41 4.49 7.52 -40.82 -0.31 4.18 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 2.19 6.53 -51.93 -0.34 1.85 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -31.66 377.57 -8.16 -39.82 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.26 Total: 3.52 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.22 Total: 5.89 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.06 Total: -55.23 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.29 Total: -15.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.66 -8.16 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035383784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.534 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds