Wall clock time and date at job start Tue Mar 31 2020 13:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 N 1.46496 * 109.47437 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19519 * 270.17639 * 4 3 2 6 6 C 1.30858 * 110.92963 * 180.27697 * 5 4 3 7 7 C 1.39669 * 107.86191 * 359.71257 * 6 5 4 8 8 C 1.36603 * 125.18861 * 89.96288 * 4 3 2 9 9 C 1.47164 * 126.88472 * 359.97438 * 8 4 3 10 10 O 1.21636 * 119.99676 * 353.02367 * 9 8 4 11 11 N 1.34774 * 119.99834 * 173.02633 * 9 8 4 12 12 C 1.46501 * 119.99415 * 185.36216 * 11 9 8 13 13 C 1.53008 * 109.46631 * 179.97438 * 12 11 9 14 14 H 1.08993 * 109.51245 * 304.89892 * 13 12 11 15 15 C 1.52879 * 109.61958 * 184.90999 * 13 12 11 16 16 N 1.47160 * 108.60628 * 187.89948 * 15 13 12 17 17 C 1.36937 * 120.98069 * 230.50087 * 16 15 13 18 18 H 1.07993 * 120.00013 * 33.53227 * 17 16 15 19 19 C 1.38810 * 119.99579 * 213.52838 * 17 16 15 20 20 N 1.31619 * 120.00409 * 10.62709 * 19 17 16 21 21 Si 1.86806 * 119.99693 * 190.34988 * 19 17 16 22 22 H 1.48500 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46733 * 120.00249 * 21 19 17 24 24 H 1.48495 * 109.47285 * 240.00282 * 21 19 17 25 25 C 1.47157 * 118.03336 * 50.22404 * 16 15 13 26 26 C 1.53295 * 108.38568 * 309.71910 * 25 16 15 27 27 O 1.42961 * 109.51093 * 65.00440 * 13 12 11 28 28 H 1.08998 * 109.46888 * 59.99982 * 1 2 3 29 29 H 1.08997 * 109.46688 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46804 * 299.99713 * 1 2 3 31 31 H 1.08999 * 109.47507 * 240.00499 * 2 1 3 32 32 H 1.09003 * 109.47127 * 119.99614 * 2 1 3 33 33 H 1.09006 * 109.47192 * 59.99931 * 3 2 1 34 34 H 1.08995 * 109.47228 * 300.00296 * 3 2 1 35 35 H 1.08000 * 126.07162 * 179.67812 * 6 5 4 36 36 H 1.08002 * 127.31965 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00122 * 5.36512 * 11 9 8 38 38 H 1.09004 * 109.47047 * 60.00616 * 12 11 9 39 39 H 1.08998 * 109.47601 * 299.99912 * 12 11 9 40 40 H 1.08999 * 109.62170 * 68.07938 * 15 13 12 41 41 H 1.09002 * 109.52811 * 307.66270 * 15 13 12 42 42 H 0.96996 * 119.99830 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.67831 * 69.44523 * 25 16 15 44 44 H 1.08996 * 109.67617 * 189.95492 * 25 16 15 45 45 H 1.08998 * 109.51182 * 172.22789 * 26 25 16 46 46 H 1.08996 * 109.51040 * 292.32620 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2448 1.4396 1.0506 6 6 5.5132 1.4465 0.7287 7 6 5.6014 1.4482 -0.6652 8 6 4.2927 1.4418 -1.1155 9 6 3.8403 1.4401 -2.5158 10 8 2.6584 1.3114 -2.7730 11 7 4.7355 1.5812 -3.5133 12 6 4.2754 1.6975 -4.8994 13 6 5.4833 1.8468 -5.8267 14 1 6.0909 2.6906 -5.5001 15 6 5.0045 2.0908 -7.2580 16 7 6.1683 2.0413 -8.1573 17 6 6.4035 3.0424 -9.0615 18 1 6.1401 4.0614 -8.8195 19 6 6.9805 2.7474 -10.2890 20 7 7.1098 1.4946 -10.6714 21 14 7.5665 4.1287 -11.4017 22 1 7.3040 5.4360 -10.7480 23 1 9.0238 3.9823 -11.6469 24 1 6.8383 4.0660 -12.6943 25 6 7.0752 0.8872 -8.0518 26 6 7.4559 0.7045 -6.5782 27 8 6.2660 0.6512 -5.7877 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.3443 1.4508 1.4184 36 1 6.4999 1.4538 -1.2644 37 1 5.6844 1.6056 -3.3136 38 1 3.6328 2.5726 -4.9966 39 1 3.7154 0.8032 -5.1727 40 1 4.5313 3.0705 -7.3236 41 1 4.2896 1.3177 -7.5398 42 1 7.5126 1.2885 -11.5293 43 1 6.5724 -0.0091 -8.4149 44 1 7.9722 1.0701 -8.6434 45 1 8.0143 -0.2239 -6.4588 46 1 8.0716 1.5437 -6.2545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035383784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:18 Heat of formation + Delta-G solvation = -7.624524 kcal Electronic energy + Delta-G solvation = -27286.046504 eV Core-core repulsion = 23405.206949 eV Total energy + Delta-G solvation = -3880.839556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.53731 -40.72358 -39.85512 -36.69670 -36.32943 -35.72458 -33.44018 -32.81353 -32.44986 -31.55954 -29.19362 -27.57602 -27.16581 -25.04377 -24.32307 -23.26817 -23.06743 -22.19302 -21.61379 -20.77696 -19.19007 -18.78787 -17.54795 -17.35802 -17.03005 -16.93430 -16.62817 -16.22540 -16.11854 -15.80832 -15.55165 -15.47750 -15.01414 -14.84205 -14.70831 -14.52469 -14.19798 -14.10111 -13.71780 -13.20261 -13.10899 -12.98996 -12.96149 -12.75124 -12.52745 -12.35354 -12.16713 -12.04544 -11.93448 -11.87197 -11.79106 -11.35743 -11.18407 -10.74685 -10.58397 -10.40933 -10.07490 -9.98619 -8.65996 -7.91807 -5.47836 0.20535 1.34529 1.45899 1.47803 1.58158 1.65063 2.12249 2.13757 2.47018 2.78261 3.25198 3.48571 3.53807 3.54492 3.81596 3.97639 4.01360 4.06988 4.14269 4.22121 4.27241 4.44576 4.48968 4.51213 4.53609 4.61477 4.65686 4.73259 4.74700 4.78348 4.86312 4.91509 5.02591 5.07657 5.11127 5.23313 5.25996 5.29206 5.55538 5.57121 5.61009 5.74659 6.28212 6.34387 6.37788 6.98624 7.07688 7.09489 7.72759 8.30109 9.14035 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.002408 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.852187 B =11624.839701 C =12070.174651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.264 5.264 5 N -0.298 5.298 6 C -0.005 4.005 7 C -0.179 4.179 8 C -0.059 4.059 9 C 0.588 3.412 10 O -0.569 6.569 11 N -0.694 5.694 12 C 0.144 3.856 13 C 0.079 3.921 14 H 0.073 0.927 15 C 0.117 3.883 16 N -0.612 5.612 17 C -0.268 4.268 18 H 0.070 0.930 19 C -0.045 4.045 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.293 1.293 25 C 0.146 3.854 26 C 0.054 3.946 27 O -0.389 6.389 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.218 0.782 36 H 0.187 0.813 37 H 0.416 0.584 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.252 0.748 43 H -0.001 1.001 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 -0.103 23.196 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.004 4.004 4 N -0.052 5.052 5 N -0.130 5.130 6 C -0.180 4.180 7 C -0.208 4.208 8 C -0.187 4.187 9 C 0.374 3.626 10 O -0.449 6.449 11 N -0.345 5.345 12 C 0.020 3.980 13 C 0.019 3.981 14 H 0.090 0.910 15 C -0.009 4.009 16 N -0.337 5.337 17 C -0.398 4.398 18 H 0.088 0.912 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.220 1.220 25 C 0.021 3.979 26 C -0.023 4.023 27 O -0.309 6.309 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.235 0.765 36 H 0.204 0.796 37 H 0.254 0.746 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.317 -0.375 23.850 24.675 hybrid contribution 1.358 0.465 -2.051 2.504 sum -4.959 0.090 21.798 22.355 Atomic orbital electron populations 1.21641 0.92465 1.03080 1.02836 1.21735 0.98355 0.94466 1.01913 1.22350 0.72052 1.00181 1.05843 1.45991 1.08145 1.49556 1.01545 1.73185 1.05353 1.20408 1.14089 1.24180 0.93617 1.04677 0.95556 1.22693 0.95642 1.06357 0.96095 1.21466 0.92605 1.15386 0.89247 1.17079 0.85381 0.76380 0.83721 1.90778 1.17616 1.51594 1.84936 1.45461 1.10589 1.72812 1.05685 1.21266 0.95018 1.03094 0.78641 1.22576 0.92318 0.88227 0.94959 0.90960 1.21524 0.89780 1.00055 0.89584 1.44239 1.24921 1.23363 1.41162 1.19510 1.37956 0.88304 0.94042 0.91237 1.26034 1.01930 0.98256 0.97888 1.70154 1.47948 1.18496 1.21394 0.85153 0.77301 0.79325 0.78321 1.18761 1.21431 1.21994 1.21236 0.94286 0.88531 0.93887 1.23156 0.86146 1.02269 0.90771 1.87812 1.36743 1.37425 1.68879 0.92446 0.91384 0.90749 0.93258 0.91393 0.86803 0.87876 0.76523 0.79582 0.74639 0.88725 0.91530 0.90869 0.96574 0.93915 0.98317 0.92261 0.87371 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 71.98 0.71 -1.26 16 2 C -0.13 -2.32 6.26 30.60 0.19 -2.13 16 3 C 0.12 2.23 5.72 86.38 0.49 2.72 16 4 N -0.26 -6.02 3.35 -334.69 -1.12 -7.14 16 5 N -0.30 -6.54 11.90 -57.14 -0.68 -7.22 16 6 C -0.01 -0.09 12.03 85.18 1.02 0.94 16 7 C -0.18 -3.16 10.50 22.66 0.24 -2.92 16 8 C -0.06 -1.36 6.96 40.79 0.28 -1.08 16 9 C 0.59 15.31 7.78 86.59 0.67 15.98 16 10 O -0.57 -17.69 14.81 -4.15 -0.06 -17.75 16 11 N -0.69 -16.25 5.49 -466.60 -2.56 -18.82 16 12 C 0.14 3.86 5.35 86.38 0.46 4.32 16 13 C 0.08 2.46 2.80 30.56 0.09 2.55 16 14 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.12 4.65 6.00 86.21 0.52 5.17 16 16 N -0.61 -29.93 3.02 -698.32 -2.11 -32.04 16 17 C -0.27 -14.26 9.59 84.03 0.81 -13.45 16 18 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 19 C -0.04 -2.44 5.05 84.86 0.43 -2.02 16 20 N -0.94 -54.31 11.33 21.65 0.25 -54.07 16 21 Si 0.97 43.44 29.57 68.60 2.03 45.47 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.15 6.84 5.37 86.35 0.46 7.31 16 26 C 0.05 1.90 6.98 72.08 0.50 2.40 16 27 O -0.39 -13.16 10.33 -148.98 -1.54 -14.69 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.10 2.22 6.48 -2.39 -0.02 2.20 16 35 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.19 2.16 7.59 -2.91 -0.02 2.14 16 37 H 0.42 8.04 7.52 -92.71 -0.70 7.34 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.06 3.07 6.53 -2.39 -0.02 3.06 16 45 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.19 377.57 1.37 -67.83 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.28 Total: 19.90 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 6.89 Total: 18.54 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.23 Total: -119.28 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.60 Total: -32.45 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.19 1.37 -67.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035383784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.202 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds