Wall clock time and date at job start Tue Mar 31 2020 13:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46780 * 2 1 4 4 N 1.46500 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.28444 * 125.18802 * 274.01779 * 4 3 2 6 6 C 1.30863 * 110.92702 * 179.71391 * 5 4 3 7 7 C 1.39668 * 107.86161 * 0.41882 * 6 5 4 8 8 C 1.36598 * 125.19494 * 93.99261 * 4 3 2 9 9 C 1.47158 * 126.88206 * 0.02562 * 8 4 3 10 10 O 1.21633 * 120.00151 * 354.69567 * 9 8 4 11 11 N 1.34780 * 120.00115 * 174.69634 * 9 8 4 12 12 C 1.46503 * 119.99941 * 184.78989 * 11 9 8 13 13 C 1.52996 * 109.46831 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.51537 * 60.00374 * 13 12 11 15 15 C 1.53295 * 109.51354 * 180.10532 * 13 12 11 16 16 N 1.47148 * 108.38574 * 172.22832 * 15 13 12 17 17 C 1.36941 * 120.98295 * 129.48911 * 16 15 13 18 18 H 1.08004 * 119.99789 * 210.28732 * 17 16 15 19 19 C 1.38808 * 120.00088 * 30.28236 * 17 16 15 20 20 N 1.31623 * 120.00133 * 10.13970 * 19 17 16 21 21 Si 1.86799 * 119.99905 * 190.13797 * 19 17 16 22 22 H 1.48498 * 109.47378 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47193 * 120.00212 * 21 19 17 24 24 H 1.48503 * 109.47077 * 240.00241 * 21 19 17 25 25 C 1.47156 * 118.03308 * 309.45968 * 16 15 13 26 26 C 1.53287 * 108.38536 * 50.54327 * 25 16 15 27 27 O 1.42957 * 109.26171 * 307.71760 * 26 25 16 28 28 H 1.08998 * 109.47532 * 300.00174 * 1 2 3 29 29 H 1.09001 * 109.47366 * 60.00233 * 1 2 3 30 30 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47066 * 239.99808 * 2 1 3 32 32 H 1.08999 * 109.46858 * 119.99708 * 2 1 3 33 33 H 1.08998 * 109.47231 * 59.99641 * 3 2 1 34 34 H 1.09003 * 109.47642 * 299.99655 * 3 2 1 35 35 H 1.08004 * 126.06852 * 180.27235 * 6 5 4 36 36 H 1.08002 * 127.31752 * 179.86544 * 7 6 5 37 37 H 0.97001 * 119.99585 * 4.79995 * 11 9 8 38 38 H 1.08997 * 109.47161 * 300.00160 * 12 11 9 39 39 H 1.09000 * 109.46997 * 60.00642 * 12 11 9 40 40 H 1.08996 * 109.67870 * 291.95134 * 15 13 12 41 41 H 1.09000 * 109.68388 * 52.46633 * 15 13 12 42 42 H 0.96996 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.09008 * 109.67618 * 170.26076 * 25 16 15 44 44 H 1.09001 * 109.68391 * 290.77335 * 25 16 15 45 45 H 1.08997 * 109.51626 * 67.61227 * 26 25 16 46 46 H 1.08996 * 109.51430 * 187.77554 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.2455 1.3689 1.0462 6 6 5.5137 1.3855 0.7237 7 6 5.6008 1.4887 -0.6665 8 6 4.2917 1.5205 -1.1145 9 6 3.8383 1.6187 -2.5110 10 8 2.6530 1.5399 -2.7726 11 7 4.7363 1.7960 -3.5003 12 6 4.2788 1.9988 -4.8772 13 6 5.4895 2.1725 -5.7964 14 1 6.1136 1.2802 -5.7491 15 6 5.0119 2.3874 -7.2371 16 7 6.1770 2.7369 -8.0651 17 6 6.4315 2.0778 -9.2382 18 1 7.4486 1.9594 -9.5814 19 6 5.3821 1.5618 -9.9860 20 7 4.1403 1.8732 -9.6801 21 14 5.7322 0.4255 -11.4267 22 1 7.1986 0.2341 -11.5613 23 1 5.0806 -0.8879 -11.1910 24 1 5.1956 1.0275 -12.6737 25 6 7.0604 3.8161 -7.5955 26 6 7.4383 3.5317 -6.1375 27 8 6.2486 3.3090 -5.3768 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 6.3453 1.3315 1.4107 36 1 6.4989 1.5301 -1.2649 37 1 5.6855 1.7891 -3.3006 38 1 3.7000 1.1330 -5.1990 39 1 3.6549 2.8912 -4.9250 40 1 4.5558 1.4716 -7.6131 41 1 4.2841 3.1984 -7.2656 42 1 3.4071 1.5130 -10.2029 43 1 7.9610 3.8464 -8.2090 44 1 6.5396 4.7715 -7.6608 45 1 8.0702 2.6447 -6.0915 46 1 7.9777 4.3857 -5.7279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035383786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:22 Heat of formation + Delta-G solvation = 14.895965 kcal Electronic energy + Delta-G solvation = -27468.501555 eV Core-core repulsion = 23588.638561 eV Total energy + Delta-G solvation = -3879.862994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65565 -39.45230 -38.39309 -35.74113 -34.82582 -34.34775 -31.88371 -31.59117 -31.27256 -30.35859 -27.43908 -26.72811 -25.68989 -23.43129 -23.07579 -22.32356 -21.89403 -21.13433 -20.16098 -19.55321 -18.12935 -16.98723 -16.28348 -16.17371 -15.92654 -15.57151 -15.37200 -15.14773 -14.55923 -14.53962 -14.31398 -14.07251 -13.94059 -13.46040 -13.37715 -13.24617 -12.98201 -12.84496 -12.39785 -12.27746 -12.23646 -11.64469 -11.57916 -11.10264 -11.08400 -10.93530 -10.92523 -10.75524 -10.45484 -10.27322 -10.17761 -10.01295 -9.69784 -9.38109 -9.18042 -9.11035 -8.92295 -8.61924 -6.74953 -5.88968 -3.38612 1.17650 2.24245 2.48600 3.15947 3.24620 3.30846 3.38265 3.39977 4.18880 4.34594 4.38867 4.55849 4.59573 4.76996 4.90642 5.03137 5.14891 5.17254 5.29815 5.31115 5.41750 5.47264 5.51805 5.55325 5.59148 5.72969 5.81879 5.83915 5.89026 5.95067 5.96728 6.06391 6.17747 6.29859 6.33573 6.44704 6.55559 6.59635 6.75010 7.03103 7.44829 7.46986 7.66841 7.78871 7.92531 8.14012 8.31421 9.07169 9.67979 10.26662 11.18784 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002790 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.281761 B =10033.858633 C =11141.520683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.255 5.255 5 N -0.281 5.281 6 C -0.006 4.006 7 C -0.190 4.190 8 C -0.032 4.032 9 C 0.585 3.415 10 O -0.543 6.543 11 N -0.701 5.701 12 C 0.134 3.866 13 C 0.054 3.946 14 H 0.057 0.943 15 C 0.154 3.846 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.108 3.892 26 C 0.050 3.950 27 O -0.390 6.390 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.185 0.815 36 H 0.161 0.839 37 H 0.406 0.594 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.032 0.968 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -1.435 19.202 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.005 4.005 4 N -0.043 5.043 5 N -0.114 5.114 6 C -0.181 4.181 7 C -0.219 4.219 8 C -0.161 4.161 9 C 0.370 3.630 10 O -0.421 6.421 11 N -0.352 5.352 12 C 0.011 3.989 13 C -0.006 4.006 14 H 0.075 0.925 15 C 0.028 3.972 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.215 1.215 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.310 6.310 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.202 0.798 36 H 0.178 0.822 37 H 0.241 0.759 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.697 -1.457 19.927 20.053 hybrid contribution 1.335 -0.625 -1.589 2.167 sum -0.362 -2.082 18.339 18.460 Atomic orbital electron populations 1.21664 0.93971 1.02501 1.02373 1.21803 0.97103 0.95051 1.03185 1.22331 0.72464 0.99878 1.05846 1.45812 1.07645 1.48956 1.01856 1.73181 1.04321 1.19866 1.13987 1.23549 0.93471 1.06081 0.95017 1.22282 0.95670 1.08284 0.95707 1.21501 0.91488 1.13089 0.89997 1.16923 0.85858 0.77158 0.83029 1.90783 1.16186 1.51210 1.83944 1.45672 1.09927 1.71837 1.07717 1.21511 0.96446 1.02622 0.78311 1.23185 0.91769 0.88542 0.97102 0.92518 1.21302 0.89356 1.01932 0.84649 1.44003 1.28226 1.37130 1.22460 1.19214 0.92125 1.29874 0.97412 0.91452 1.25199 0.95543 1.00755 0.97885 1.69961 0.97950 1.45678 1.41130 0.86154 0.77783 0.80253 0.82159 1.20202 1.21424 1.21508 1.21618 0.95239 0.92011 0.92918 1.23007 0.86347 0.99800 0.93612 1.87775 1.37323 1.48462 1.57423 0.92455 0.91788 0.91947 0.90897 0.91359 0.88667 0.86338 0.79763 0.82176 0.75926 0.89569 0.90432 0.88537 0.95018 0.93389 0.91960 0.95527 0.93845 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.30 6.26 -26.73 -0.17 -1.47 16 3 C 0.11 1.23 5.86 -4.04 -0.02 1.21 16 4 N -0.26 -3.23 3.35 -57.14 -0.19 -3.43 16 5 N -0.28 -3.50 11.90 30.59 0.36 -3.14 16 6 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.19 -2.06 10.50 -38.99 -0.41 -2.47 16 8 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 9 C 0.59 8.59 7.79 -12.64 -0.10 8.49 16 10 O -0.54 -9.18 14.68 5.25 0.08 -9.10 16 11 N -0.70 -9.74 5.44 -61.47 -0.33 -10.08 16 12 C 0.13 2.17 5.37 -4.04 -0.02 2.15 16 13 C 0.05 0.97 2.86 -26.58 -0.08 0.89 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 15 C 0.15 3.52 4.67 -3.54 -0.02 3.50 16 16 N -0.59 -14.44 3.04 -171.83 -0.52 -14.96 16 17 C -0.26 -6.81 9.64 -15.06 -0.15 -6.95 16 18 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -25.38 11.03 55.49 0.61 -24.77 16 21 Si 0.91 21.04 29.57 -169.99 -5.03 16.02 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.11 2.19 6.74 -3.54 -0.02 2.17 16 26 C 0.05 0.84 6.98 37.31 0.26 1.10 16 27 O -0.39 -6.93 10.14 -35.23 -0.36 -7.28 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.12 1.40 6.20 -51.93 -0.32 1.08 16 35 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.16 1.32 7.59 -52.49 -0.40 0.92 16 37 H 0.41 4.89 7.38 -40.82 -0.30 4.58 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.10 2.43 6.24 -51.93 -0.32 2.11 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.06 1.19 7.96 -51.92 -0.41 0.78 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -31.36 376.54 -8.15 -39.51 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.22 Total: 4.93 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.22 Total: 6.62 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.07 Total: -56.37 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.28 Total: -16.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.36 -8.15 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035383786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.411 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds