Wall clock time and date at job start Tue Mar 31 2020 13:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46780 * 2 1 4 4 N 1.46500 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.28444 * 125.18802 * 274.01779 * 4 3 2 6 6 C 1.30863 * 110.92702 * 179.71391 * 5 4 3 7 7 C 1.39668 * 107.86161 * 0.41882 * 6 5 4 8 8 C 1.36598 * 125.19494 * 93.99261 * 4 3 2 9 9 C 1.47158 * 126.88206 * 0.02562 * 8 4 3 10 10 O 1.21633 * 120.00151 * 354.69567 * 9 8 4 11 11 N 1.34780 * 120.00115 * 174.69634 * 9 8 4 12 12 C 1.46503 * 119.99941 * 184.78989 * 11 9 8 13 13 C 1.52996 * 109.46831 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.51537 * 60.00374 * 13 12 11 15 15 C 1.53295 * 109.51354 * 180.10532 * 13 12 11 16 16 N 1.47148 * 108.38574 * 172.22832 * 15 13 12 17 17 C 1.36941 * 120.98295 * 129.48911 * 16 15 13 18 18 H 1.08004 * 119.99789 * 210.28732 * 17 16 15 19 19 C 1.38808 * 120.00088 * 30.28236 * 17 16 15 20 20 N 1.31623 * 120.00133 * 10.13970 * 19 17 16 21 21 Si 1.86799 * 119.99905 * 190.13797 * 19 17 16 22 22 H 1.48498 * 109.47378 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47193 * 120.00212 * 21 19 17 24 24 H 1.48503 * 109.47077 * 240.00241 * 21 19 17 25 25 C 1.47156 * 118.03308 * 309.45968 * 16 15 13 26 26 C 1.53287 * 108.38536 * 50.54327 * 25 16 15 27 27 O 1.42957 * 109.26171 * 307.71760 * 26 25 16 28 28 H 1.08998 * 109.47532 * 300.00174 * 1 2 3 29 29 H 1.09001 * 109.47366 * 60.00233 * 1 2 3 30 30 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47066 * 239.99808 * 2 1 3 32 32 H 1.08999 * 109.46858 * 119.99708 * 2 1 3 33 33 H 1.08998 * 109.47231 * 59.99641 * 3 2 1 34 34 H 1.09003 * 109.47642 * 299.99655 * 3 2 1 35 35 H 1.08004 * 126.06852 * 180.27235 * 6 5 4 36 36 H 1.08002 * 127.31752 * 179.86544 * 7 6 5 37 37 H 0.97001 * 119.99585 * 4.79995 * 11 9 8 38 38 H 1.08997 * 109.47161 * 300.00160 * 12 11 9 39 39 H 1.09000 * 109.46997 * 60.00642 * 12 11 9 40 40 H 1.08996 * 109.67870 * 291.95134 * 15 13 12 41 41 H 1.09000 * 109.68388 * 52.46633 * 15 13 12 42 42 H 0.96996 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.09008 * 109.67618 * 170.26076 * 25 16 15 44 44 H 1.09001 * 109.68391 * 290.77335 * 25 16 15 45 45 H 1.08997 * 109.51626 * 67.61227 * 26 25 16 46 46 H 1.08996 * 109.51430 * 187.77554 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.2455 1.3689 1.0462 6 6 5.5137 1.3855 0.7237 7 6 5.6008 1.4887 -0.6665 8 6 4.2917 1.5205 -1.1145 9 6 3.8383 1.6187 -2.5110 10 8 2.6530 1.5399 -2.7726 11 7 4.7363 1.7960 -3.5003 12 6 4.2788 1.9988 -4.8772 13 6 5.4895 2.1725 -5.7964 14 1 6.1136 1.2802 -5.7491 15 6 5.0119 2.3874 -7.2371 16 7 6.1770 2.7369 -8.0651 17 6 6.4315 2.0778 -9.2382 18 1 7.4486 1.9594 -9.5814 19 6 5.3821 1.5618 -9.9860 20 7 4.1403 1.8732 -9.6801 21 14 5.7322 0.4255 -11.4267 22 1 7.1986 0.2341 -11.5613 23 1 5.0806 -0.8879 -11.1910 24 1 5.1956 1.0275 -12.6737 25 6 7.0604 3.8161 -7.5955 26 6 7.4383 3.5317 -6.1375 27 8 6.2486 3.3090 -5.3768 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 6.3453 1.3315 1.4107 36 1 6.4989 1.5301 -1.2649 37 1 5.6855 1.7891 -3.3006 38 1 3.7000 1.1330 -5.1990 39 1 3.6549 2.8912 -4.9250 40 1 4.5558 1.4716 -7.6131 41 1 4.2841 3.1984 -7.2656 42 1 3.4071 1.5130 -10.2029 43 1 7.9610 3.8464 -8.2090 44 1 6.5396 4.7715 -7.6608 45 1 8.0702 2.6447 -6.0915 46 1 7.9777 4.3857 -5.7279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035383786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:21 Heat of formation + Delta-G solvation = -6.221043 kcal Electronic energy + Delta-G solvation = -27469.417257 eV Core-core repulsion = 23588.638561 eV Total energy + Delta-G solvation = -3880.778696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54200 -40.72673 -39.84849 -36.68591 -36.33059 -35.77760 -33.27912 -32.96289 -32.46524 -31.55464 -29.06528 -27.61131 -27.21933 -25.10480 -24.29884 -23.22410 -23.09346 -22.16865 -21.57515 -20.82448 -19.18814 -18.83870 -17.54941 -17.37562 -17.05385 -16.89248 -16.63994 -16.19575 -16.08497 -15.73988 -15.62824 -15.47784 -15.04169 -14.83971 -14.63227 -14.57326 -14.24497 -14.09915 -13.75508 -13.18953 -13.11315 -12.98315 -12.94257 -12.73669 -12.49826 -12.36629 -12.16476 -12.05347 -11.91653 -11.87987 -11.80898 -11.33680 -11.18125 -10.75926 -10.58055 -10.42477 -10.08459 -9.99064 -8.69278 -7.90620 -5.43969 0.19688 1.33281 1.46128 1.47866 1.57992 1.65079 2.08544 2.15831 2.47309 2.79202 3.25446 3.48887 3.53644 3.54748 3.80450 4.00676 4.03607 4.07677 4.13823 4.21551 4.28220 4.43717 4.46825 4.50760 4.52941 4.60988 4.63988 4.70063 4.74416 4.82923 4.86659 4.98492 5.01785 5.09425 5.09574 5.24207 5.25277 5.27927 5.55255 5.56282 5.60529 5.74251 6.28251 6.34931 6.36944 6.98712 7.07285 7.09097 7.74188 8.29153 9.14652 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002790 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.281761 B =10033.858633 C =11141.520683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.112 3.888 4 N -0.265 5.265 5 N -0.297 5.297 6 C -0.004 4.004 7 C -0.177 4.177 8 C -0.059 4.059 9 C 0.586 3.414 10 O -0.573 6.573 11 N -0.690 5.690 12 C 0.147 3.853 13 C 0.076 3.924 14 H 0.066 0.934 15 C 0.161 3.839 16 N -0.615 5.615 17 C -0.265 4.265 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.101 3.899 26 C 0.057 3.943 27 O -0.389 6.389 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.220 0.780 36 H 0.188 0.812 37 H 0.417 0.583 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.000 1.000 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.055 0.945 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -1.719 20.999 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.053 5.053 5 N -0.129 5.129 6 C -0.179 4.179 7 C -0.206 4.206 8 C -0.187 4.187 9 C 0.372 3.628 10 O -0.453 6.453 11 N -0.342 5.342 12 C 0.022 3.978 13 C 0.016 3.984 14 H 0.084 0.916 15 C 0.034 3.966 16 N -0.339 5.339 17 C -0.395 4.395 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.024 4.024 26 C -0.020 4.020 27 O -0.308 6.308 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.237 0.763 36 H 0.205 0.795 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.556 -1.728 21.751 21.826 hybrid contribution 0.711 -0.463 -2.119 2.283 sum 1.267 -2.191 19.632 19.794 Atomic orbital electron populations 1.21651 0.92531 1.03141 1.02791 1.21724 0.98290 0.94296 1.02020 1.22395 0.72152 1.00354 1.05884 1.45976 1.08117 1.49372 1.01794 1.73180 1.05337 1.20306 1.14102 1.24200 0.93625 1.04573 0.95521 1.22694 0.95506 1.06175 0.96198 1.21425 0.92734 1.15392 0.89184 1.17162 0.85404 0.76361 0.83841 1.90770 1.17504 1.52499 1.84513 1.45428 1.10514 1.71715 1.06533 1.21178 0.95365 1.01816 0.79423 1.22776 0.92304 0.89093 0.94240 0.91562 1.21069 0.88733 0.99265 0.87505 1.44305 1.28819 1.38362 1.22457 1.19561 0.92328 1.29525 0.98040 0.90974 1.25963 0.95406 1.02536 1.00542 1.70133 0.98680 1.47067 1.42274 0.85149 0.78132 0.78042 0.78768 1.18766 1.21590 1.22045 1.21841 0.94641 0.90279 0.95661 1.23080 0.86017 1.01950 0.90958 1.87794 1.37770 1.48126 1.57144 0.90727 0.92651 0.91199 0.93310 0.91062 0.86885 0.87932 0.76318 0.79456 0.74518 0.90158 0.91804 0.91470 0.98156 0.93950 0.90996 0.96743 0.92627 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.45 6.26 30.59 0.19 -2.26 16 3 C 0.11 2.39 5.86 86.38 0.51 2.90 16 4 N -0.26 -6.49 3.35 -334.69 -1.12 -7.61 16 5 N -0.30 -6.84 11.90 -57.14 -0.68 -7.52 16 6 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 7 C -0.18 -3.33 10.50 22.65 0.24 -3.09 16 8 C -0.06 -1.49 6.96 40.78 0.28 -1.20 16 9 C 0.59 17.08 7.79 86.59 0.67 17.75 16 10 O -0.57 -19.95 14.68 -4.13 -0.06 -20.01 16 11 N -0.69 -18.54 5.44 -466.63 -2.54 -21.08 16 12 C 0.15 4.76 5.37 86.38 0.46 5.23 16 13 C 0.08 2.69 2.86 30.69 0.09 2.77 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.16 7.56 4.67 86.35 0.40 7.96 16 16 N -0.61 -30.03 3.04 -697.55 -2.12 -32.15 16 17 C -0.26 -14.06 9.64 84.03 0.81 -13.25 16 18 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 19 C -0.05 -2.66 5.08 84.86 0.43 -2.23 16 20 N -0.94 -54.33 11.03 21.65 0.24 -54.10 16 21 Si 0.97 43.67 29.57 68.60 2.03 45.70 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 C 0.10 3.97 6.74 86.35 0.58 4.55 16 26 C 0.06 1.74 6.98 72.08 0.50 2.25 16 27 O -0.39 -12.99 10.14 -148.98 -1.51 -14.51 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.53 6.20 -2.39 -0.01 2.51 16 35 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.19 2.33 7.59 -2.91 -0.02 2.31 16 37 H 0.42 9.09 7.38 -92.71 -0.68 8.41 16 38 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 3.54 6.24 -2.39 -0.01 3.52 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.07 2.64 7.96 -2.38 -0.02 2.62 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -69.35 376.54 1.45 -67.91 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.30 Total: 22.51 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 6.91 Total: 20.85 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.22 Total: -122.45 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.57 Total: -34.51 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -69.35 1.45 -67.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035383786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.685 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds