Wall clock time and date at job start Tue Mar 31 2020 13:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 N 1.46504 * 109.47259 * 119.99461 * 2 1 3 5 5 N 1.28445 * 125.18859 * 305.27571 * 4 2 1 6 6 C 1.30868 * 110.92346 * 180.02562 * 5 4 2 7 7 C 1.39672 * 107.86167 * 0.02562 * 6 5 4 8 8 C 1.36593 * 125.19055 * 125.29721 * 4 2 1 9 9 C 1.47167 * 126.88339 * 0.24865 * 8 4 2 10 10 O 1.21634 * 119.99823 * 354.34146 * 9 8 4 11 11 N 1.34775 * 120.00092 * 174.33994 * 9 8 4 12 12 C 1.46503 * 120.00006 * 184.87536 * 11 9 8 13 13 C 1.52995 * 109.46918 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.51172 * 304.99553 * 13 12 11 15 15 C 1.53299 * 109.51088 * 184.89966 * 13 12 11 16 16 N 1.47156 * 108.38723 * 187.77436 * 15 13 12 17 17 C 1.36932 * 120.98058 * 230.56223 * 16 15 13 18 18 H 1.08002 * 120.00458 * 30.29988 * 17 16 15 19 19 C 1.38819 * 119.99586 * 210.30442 * 17 16 15 20 20 N 1.31615 * 120.00183 * 10.00809 * 19 17 16 21 21 Si 1.86805 * 119.99891 * 190.00645 * 19 17 16 22 22 H 1.48504 * 109.46940 * 59.99960 * 21 19 17 23 23 H 1.48495 * 109.47024 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47129 * 300.00478 * 21 19 17 25 25 C 1.47149 * 118.03477 * 50.52860 * 16 15 13 26 26 C 1.53294 * 108.39054 * 309.46960 * 25 16 15 27 27 O 1.42958 * 109.51781 * 65.10238 * 13 12 11 28 28 H 1.09000 * 109.46721 * 300.00220 * 1 2 3 29 29 H 1.08990 * 109.46970 * 60.00303 * 1 2 3 30 30 H 1.09001 * 109.46800 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47249 * 239.99655 * 2 1 3 32 32 H 1.09000 * 109.46570 * 299.99502 * 3 2 1 33 33 H 1.08990 * 109.47484 * 59.99799 * 3 2 1 34 34 H 1.09007 * 109.46919 * 180.02562 * 3 2 1 35 35 H 1.07999 * 126.06601 * 180.02562 * 6 5 4 36 36 H 1.08002 * 127.32015 * 180.02562 * 7 6 5 37 37 H 0.96998 * 119.99853 * 4.87728 * 11 9 8 38 38 H 1.08999 * 109.46929 * 300.00265 * 12 11 9 39 39 H 1.08995 * 109.47127 * 60.00288 * 12 11 9 40 40 H 1.08998 * 109.68261 * 307.49602 * 15 13 12 41 41 H 1.09000 * 109.68124 * 68.01417 * 15 13 12 42 42 H 0.96999 * 120.00352 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.68004 * 69.19531 * 25 16 15 44 44 H 1.09006 * 109.67981 * 189.70774 * 25 16 15 45 45 H 1.08992 * 109.51466 * 172.22455 * 26 25 16 46 46 H 1.09006 * 109.51110 * 292.38009 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 7 1.6936 -0.3982 2.4041 6 6 2.2924 -1.1926 3.2544 7 6 3.0814 -2.0847 2.5246 8 6 2.8889 -1.7431 1.1973 9 6 3.5047 -2.3813 0.0228 10 8 3.1731 -2.0423 -1.0972 11 7 4.4360 -3.3413 0.1883 12 6 5.1260 -3.9011 -0.9765 13 6 6.1244 -4.9647 -0.5153 14 1 6.7998 -4.5338 0.2238 15 6 6.9330 -5.4638 -1.7183 16 7 7.7482 -6.6102 -1.2862 17 6 9.0913 -6.6587 -1.5485 18 1 9.6626 -5.7444 -1.6116 19 6 9.7185 -7.8833 -1.7334 20 7 8.9998 -8.9793 -1.8533 21 14 11.5826 -7.9754 -1.8120 22 1 12.1574 -7.4662 -0.5409 23 1 12.0004 -9.3861 -2.0135 24 1 12.0719 -7.1472 -2.9433 25 6 7.0775 -7.7025 -0.5634 26 6 6.2620 -7.0944 0.5833 27 8 5.4178 -6.0629 0.0664 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 2.1940 -1.1635 4.3295 36 1 3.7075 -2.8742 2.9134 37 1 4.6494 -3.6616 1.0787 38 1 4.3965 -4.3547 -1.6475 39 1 5.6571 -3.1067 -1.5007 40 1 6.2548 -5.7744 -2.5130 41 1 7.5822 -4.6667 -2.0804 42 1 9.4380 -9.8350 -1.9829 43 1 6.4139 -8.2385 -1.2419 44 1 7.8230 -8.3884 -0.1609 45 1 5.6496 -7.8687 1.0451 46 1 6.9380 -6.6720 1.3269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035384513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:24 Heat of formation + Delta-G solvation = -2.648354 kcal Electronic energy + Delta-G solvation = -27396.669980 eV Core-core repulsion = 23516.046207 eV Total energy + Delta-G solvation = -3880.623773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.55695 -40.74082 -39.86428 -36.88327 -36.42685 -35.76559 -33.42697 -32.73662 -31.56042 -31.28154 -29.20187 -28.29714 -27.28569 -25.07817 -24.52808 -23.81815 -23.24090 -21.93250 -21.48377 -20.58599 -19.01893 -18.76004 -17.55031 -17.34194 -17.07766 -16.91284 -16.63234 -16.15009 -15.88774 -15.76474 -15.54075 -15.44987 -15.01081 -14.87518 -14.70083 -14.49531 -14.04528 -13.99228 -13.72000 -13.23761 -13.17659 -13.11683 -12.92460 -12.70409 -12.52820 -12.42442 -12.33897 -12.16926 -12.08261 -11.90966 -11.78931 -11.33872 -11.05715 -10.75223 -10.56082 -10.41706 -10.08269 -9.97045 -8.69362 -7.90137 -5.43612 0.21192 1.33542 1.47945 1.49175 1.56209 1.67654 2.11172 2.13095 2.47989 2.78263 3.26286 3.48443 3.48812 3.53067 3.86978 3.96908 3.98821 4.07022 4.16332 4.19008 4.26322 4.48638 4.53410 4.57561 4.60436 4.61528 4.62979 4.71917 4.73494 4.76161 4.86036 4.88424 4.92259 5.06884 5.11980 5.13922 5.25968 5.26731 5.57809 5.58939 5.62880 5.80168 6.27435 6.33466 6.36696 6.98122 7.08023 7.11592 7.74275 8.29250 9.15142 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.002383 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.842981 B =11746.034587 C =12033.215332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 C -0.151 4.151 4 N -0.257 5.257 5 N -0.291 5.291 6 C -0.009 4.009 7 C -0.178 4.178 8 C -0.064 4.064 9 C 0.590 3.410 10 O -0.574 6.574 11 N -0.693 5.693 12 C 0.143 3.857 13 C 0.078 3.922 14 H 0.072 0.928 15 C 0.117 3.883 16 N -0.613 5.613 17 C -0.268 4.268 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.144 3.856 26 C 0.054 3.946 27 O -0.390 6.390 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.217 0.783 36 H 0.186 0.814 37 H 0.417 0.583 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.252 0.748 43 H -0.003 1.003 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 17.039 9.667 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.209 4.209 4 N -0.046 5.046 5 N -0.124 5.124 6 C -0.184 4.184 7 C -0.207 4.207 8 C -0.192 4.192 9 C 0.377 3.623 10 O -0.455 6.455 11 N -0.344 5.344 12 C 0.019 3.981 13 C 0.019 3.981 14 H 0.090 0.910 15 C -0.010 4.010 16 N -0.338 5.338 17 C -0.397 4.397 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.202 1.202 25 C 0.018 3.982 26 C -0.024 4.024 27 O -0.309 6.309 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.233 0.767 36 H 0.203 0.797 37 H 0.254 0.746 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.036 0.964 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.085 0.915 45 H 0.126 0.874 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.872 18.079 8.629 24.950 hybrid contribution 1.939 -1.572 0.007 2.496 sum -12.932 16.507 8.636 22.679 Atomic orbital electron populations 1.22049 0.91500 1.02633 1.04575 1.22238 0.97165 0.94990 0.83890 1.22084 1.01105 0.93177 1.04525 1.46184 1.30297 1.22128 1.05998 1.73107 1.23508 1.25657 0.90086 1.24163 0.98276 0.94726 1.01250 1.22672 1.04474 1.03743 0.89794 1.21439 1.03572 0.98127 0.96064 1.17092 0.78996 0.79445 0.86790 1.90707 1.63397 1.65055 1.26297 1.45466 1.39100 1.38083 1.11712 1.21287 0.94436 0.94616 0.87782 1.22655 0.92859 0.86648 0.95949 0.90983 1.21604 0.93832 0.91146 0.94379 1.44278 1.05035 1.19891 1.64570 1.19502 0.84374 0.92860 1.43000 0.91019 1.25962 1.02559 0.96074 0.99787 1.70131 1.35602 0.98462 1.54065 0.85264 0.79965 0.76289 0.78426 1.19947 1.22096 1.20172 1.21306 0.94472 0.90443 0.91963 1.23170 0.93669 0.90245 0.95289 1.87807 1.34010 1.31146 1.77950 0.91124 0.88065 0.93243 0.86256 0.88034 0.91303 0.93207 0.76670 0.79692 0.74590 0.91441 0.88678 0.96412 0.90807 0.93924 0.98437 0.91462 0.87418 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.30 71.98 0.67 -1.74 16 2 C 0.12 2.35 3.56 44.99 0.16 2.51 16 3 C -0.15 -2.42 9.45 71.98 0.68 -1.74 16 4 N -0.26 -5.93 3.09 -314.28 -0.97 -6.90 16 5 N -0.29 -6.38 11.52 -57.14 -0.66 -7.04 16 6 C -0.01 -0.16 12.03 85.18 1.02 0.86 16 7 C -0.18 -3.21 10.50 22.66 0.24 -2.97 16 8 C -0.06 -1.51 6.96 40.79 0.28 -1.22 16 9 C 0.59 15.65 7.79 86.59 0.67 16.32 16 10 O -0.57 -18.20 14.40 -4.14 -0.06 -18.26 16 11 N -0.69 -16.43 5.49 -466.63 -2.56 -18.99 16 12 C 0.14 3.85 5.35 86.38 0.46 4.31 16 13 C 0.08 2.47 2.81 30.69 0.09 2.55 16 14 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.12 4.64 6.02 86.35 0.52 5.16 16 16 N -0.61 -30.01 3.04 -697.52 -2.12 -32.13 16 17 C -0.27 -14.22 9.64 84.04 0.81 -13.41 16 18 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 19 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 20 N -0.94 -54.27 11.02 21.65 0.24 -54.03 16 21 Si 0.97 43.46 29.57 68.60 2.03 45.49 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.14 6.77 5.39 86.35 0.47 7.23 16 26 C 0.05 1.91 6.98 72.08 0.50 2.41 16 27 O -0.39 -13.27 10.33 -148.98 -1.54 -14.81 16 28 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 2.84 5.33 -2.39 -0.01 2.83 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.22 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.19 2.23 7.59 -2.91 -0.02 2.20 16 37 H 0.42 8.17 7.51 -92.71 -0.70 7.48 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 3.52 6.23 -2.38 -0.01 3.51 16 45 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -69.00 375.27 1.65 -67.35 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.29 Total: 21.23 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 7.01 Total: 18.08 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -6.08 Total: -119.08 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.60 Total: -33.06 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.00 1.65 -67.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035384513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.701 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds