Wall clock time and date at job start Tue Mar 31 2020 13:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 N 1.46501 * 109.47080 * 120.00159 * 2 1 3 5 5 C 1.35845 * 126.13464 * 299.97477 * 4 2 1 6 6 N 1.30180 * 109.00086 * 179.78903 * 5 4 2 7 7 C 1.35757 * 108.86499 * 0.37651 * 6 5 4 8 8 C 1.47324 * 126.23361 * 179.88576 * 7 6 5 9 9 O 1.21616 * 120.00354 * 179.68919 * 8 7 6 10 10 N 1.34781 * 120.00042 * 359.96683 * 8 7 6 11 11 C 1.46497 * 120.00090 * 179.72175 * 10 8 7 12 12 C 1.53002 * 109.47071 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.51252 * 305.00413 * 12 11 10 14 14 C 1.53291 * 109.51227 * 184.89982 * 12 11 10 15 15 N 1.47154 * 108.38570 * 187.77749 * 14 12 11 16 16 C 1.36938 * 120.98477 * 230.55949 * 15 14 12 17 17 H 1.07998 * 119.99349 * 26.23637 * 16 15 14 18 18 C 1.38807 * 120.00235 * 206.24294 * 16 15 14 19 19 N 1.31618 * 119.99929 * 16.90013 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 196.90484 * 18 16 15 21 21 H 1.48497 * 109.47180 * 60.00099 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47326 * 299.99415 * 20 18 16 24 24 C 1.47153 * 118.03649 * 50.53505 * 15 14 12 25 25 C 1.53299 * 108.38445 * 309.46670 * 24 15 14 26 26 O 1.42957 * 109.26244 * 52.27630 * 25 24 15 27 27 C 1.35375 * 126.13395 * 120.00131 * 4 2 1 28 28 H 1.08994 * 109.47296 * 59.99889 * 1 2 3 29 29 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99548 * 1 2 3 31 31 H 1.08999 * 109.46721 * 240.00124 * 2 1 3 32 32 H 1.09000 * 109.47275 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47064 * 300.00261 * 3 2 1 34 34 H 1.09006 * 109.46691 * 59.99985 * 3 2 1 35 35 H 1.07999 * 125.50360 * 0.04223 * 5 4 2 36 36 H 0.97010 * 119.99956 * 359.72489 * 10 8 7 37 37 H 1.09002 * 109.47394 * 300.00249 * 11 10 8 38 38 H 1.09002 * 109.46850 * 60.00246 * 11 10 8 39 39 H 1.08999 * 109.68355 * 307.49917 * 14 12 11 40 40 H 1.08995 * 109.68535 * 68.05430 * 14 12 11 41 41 H 0.97006 * 119.99942 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.67990 * 69.18889 * 24 15 14 43 43 H 1.09001 * 109.68139 * 189.70816 * 24 15 14 44 44 H 1.09001 * 109.51068 * 172.22467 * 25 24 15 45 45 H 1.09001 * 109.51316 * 292.33081 * 25 24 15 46 46 H 1.08000 * 126.56652 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7686 -0.3366 2.4837 6 7 2.3602 -1.1815 3.2779 7 6 3.0174 -2.1027 2.5280 8 6 3.8151 -3.2316 3.0375 9 8 4.3539 -3.9955 2.2596 10 7 3.9430 -3.4212 4.3658 11 6 4.7311 -4.5474 4.8724 12 6 4.7161 -4.5331 6.4023 13 1 5.0631 -3.5640 6.7608 14 6 5.6385 -5.6361 6.9337 15 7 5.4635 -5.7249 8.3921 16 6 6.5433 -5.7087 9.2340 17 1 7.4592 -5.2251 8.9281 18 6 6.4607 -6.3139 10.4805 19 7 5.4976 -7.1753 10.7313 20 14 7.7164 -5.9059 11.8019 21 1 7.6624 -4.4530 12.1043 22 1 7.4092 -6.6788 13.0322 23 1 9.0754 -6.2611 11.3201 24 6 4.0936 -5.8310 8.9191 25 6 3.2464 -4.7185 8.2909 26 8 3.3849 -4.7661 6.8689 27 6 2.7999 -1.7958 1.2167 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.1718 0.5070 2.7977 36 1 3.5131 -2.8119 4.9863 37 1 4.3014 -5.4825 4.5131 38 1 5.7585 -4.4601 4.5187 39 1 5.3749 -6.5884 6.4737 40 1 6.6751 -5.3907 6.7027 41 1 5.4397 -7.5980 11.6025 42 1 3.6745 -6.8030 8.6590 43 1 4.1073 -5.7152 10.0029 44 1 2.1998 -4.8621 8.5598 45 1 3.5870 -3.7503 8.6577 46 1 3.1792 -2.3316 0.3591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035459739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:28 Heat of formation + Delta-G solvation = 0.821115 kcal Electronic energy + Delta-G solvation = -26841.174674 eV Core-core repulsion = 22960.701348 eV Total energy + Delta-G solvation = -3880.473325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.46840 -39.27668 -38.25321 -36.43377 -34.76587 -34.16612 -31.71039 -31.31928 -30.62293 -29.69193 -27.98745 -27.43960 -25.60232 -23.53937 -23.29257 -22.93488 -21.51877 -20.79349 -20.07555 -19.32617 -17.85340 -16.92583 -16.50935 -16.02491 -15.86343 -15.71648 -15.10378 -14.86990 -14.60289 -14.41128 -14.26564 -14.14554 -13.90168 -13.61144 -13.52180 -13.15863 -12.97965 -12.93023 -12.77052 -12.63266 -12.24218 -12.02877 -11.88216 -11.46958 -11.07364 -10.79650 -10.67556 -10.44226 -10.32642 -10.24891 -10.04345 -9.97720 -9.89547 -9.57128 -8.98488 -8.93995 -8.64715 -8.49669 -6.70591 -5.80164 -3.23580 1.47758 2.25727 2.29374 3.38140 3.43214 3.44109 3.46841 3.63939 3.90397 4.21623 4.25243 4.32440 4.36631 4.44157 4.47364 4.83674 4.93686 5.02311 5.03987 5.09636 5.23094 5.30173 5.36843 5.38596 5.45963 5.60214 5.61235 5.83116 5.89629 5.96528 6.13137 6.23238 6.27385 6.38283 6.44855 6.56232 6.69378 6.77256 6.82874 7.16800 7.52925 7.57165 7.74537 7.87841 7.95173 8.37670 8.44957 9.15570 9.78416 10.35676 11.27885 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.002123 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.454399 B =13188.593471 C =13307.215832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.453 5.453 5 C 0.185 3.815 6 N -0.460 5.460 7 C -0.058 4.058 8 C 0.600 3.400 9 O -0.553 6.553 10 N -0.705 5.705 11 C 0.131 3.869 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.388 6.388 27 C 0.031 3.969 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.207 0.793 36 H 0.411 0.589 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 17.681 -21.711 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.098 4.098 6 N -0.179 5.179 7 C -0.187 4.187 8 C 0.386 3.614 9 O -0.432 6.432 10 N -0.355 5.355 11 C 0.007 3.993 12 C 0.006 3.994 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.307 6.307 27 C -0.107 4.107 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.247 0.753 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.709 17.041 -21.418 29.391 hybrid contribution 0.524 0.495 0.420 0.834 sum -10.185 17.536 -20.998 29.192 Atomic orbital electron populations 1.22194 0.92814 1.03569 1.03638 1.21571 0.95780 0.94201 0.86204 1.22194 1.02409 0.93951 1.03641 1.45649 1.37816 1.21937 1.08225 1.25007 1.04109 1.02020 0.78691 1.70659 1.10681 1.03938 1.32594 1.20620 1.07253 1.00358 0.90486 1.16895 0.79430 0.82682 0.82435 1.90779 1.49216 1.46406 1.56785 1.45748 1.52511 1.30617 1.06579 1.21433 0.95944 0.89618 0.92331 1.22797 0.85419 0.99624 0.91608 0.92339 1.21447 0.97077 0.95222 0.86777 1.44060 1.02508 1.86023 0.99195 1.19160 0.93330 1.29314 0.96552 0.91393 1.25047 0.98444 0.96504 0.99745 1.70031 1.34474 1.27851 1.22391 0.86313 0.80979 0.77909 0.81231 1.21001 1.21592 1.20813 1.21450 0.83378 0.93950 0.99853 1.23311 1.00125 0.99878 0.80477 1.87803 1.27173 1.93163 1.22593 1.22581 0.97724 0.90725 0.99710 0.90209 0.91478 0.91383 0.87855 0.91502 0.90209 0.91386 0.77674 0.75341 0.90627 0.90110 0.95202 0.91772 0.93483 0.95396 0.88803 0.90105 0.94115 0.79669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 9.24 37.16 0.34 -0.14 16 2 C 0.12 0.48 3.57 -67.93 -0.24 0.24 16 3 C -0.16 -0.46 9.24 37.16 0.34 -0.12 16 4 N -0.45 -3.45 2.59 -111.25 -0.29 -3.74 16 5 C 0.19 1.64 11.53 -89.90 -1.04 0.61 16 6 N -0.46 -5.90 11.01 -11.03 -0.12 -6.03 16 7 C -0.06 -0.79 6.98 -83.09 -0.58 -1.37 16 8 C 0.60 9.77 7.81 -12.56 -0.10 9.67 16 9 O -0.55 -10.26 16.88 5.26 0.09 -10.17 16 10 N -0.70 -11.29 5.50 -61.41 -0.34 -11.63 16 11 C 0.13 2.18 5.34 -4.04 -0.02 2.16 16 12 C 0.07 1.23 2.81 -26.58 -0.07 1.15 16 13 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.12 2.64 6.02 -3.53 -0.02 2.62 16 15 N -0.59 -15.26 3.05 -171.83 -0.52 -15.79 16 16 C -0.25 -7.04 9.65 -15.06 -0.15 -7.19 16 17 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 18 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 19 N -0.90 -26.37 11.14 55.49 0.62 -25.75 16 20 Si 0.91 21.76 29.59 -169.99 -5.03 16.73 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 3.42 5.45 -3.53 -0.02 3.40 16 25 C 0.04 0.81 6.98 37.31 0.26 1.07 16 26 O -0.39 -7.81 10.33 -35.23 -0.36 -8.17 16 27 C 0.03 0.33 11.22 -16.64 -0.19 0.14 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.19 7.94 -51.93 -0.41 -0.22 16 31 H 0.10 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.07 0.19 7.94 -51.93 -0.41 -0.23 16 35 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.41 6.42 8.19 -40.82 -0.33 6.09 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.31 7.96 -51.93 -0.41 0.90 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 2.50 6.14 -51.93 -0.32 2.18 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -34.52 380.30 -9.15 -43.67 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.35 Total: 2.95 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -1.56 Total: 12.19 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.65 Total: -62.93 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.28 Total: -18.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.52 -9.15 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035459739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.488 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds