Wall clock time and date at job start Tue Mar 31 2020 13:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 N 1.46501 * 109.47080 * 120.00159 * 2 1 3 5 5 C 1.35845 * 126.13464 * 299.97477 * 4 2 1 6 6 N 1.30180 * 109.00086 * 179.78903 * 5 4 2 7 7 C 1.35757 * 108.86499 * 0.37651 * 6 5 4 8 8 C 1.47324 * 126.23361 * 179.88576 * 7 6 5 9 9 O 1.21616 * 120.00354 * 179.68919 * 8 7 6 10 10 N 1.34781 * 120.00042 * 359.96683 * 8 7 6 11 11 C 1.46497 * 120.00090 * 179.72175 * 10 8 7 12 12 C 1.53002 * 109.47071 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.51252 * 305.00413 * 12 11 10 14 14 C 1.53291 * 109.51227 * 184.89982 * 12 11 10 15 15 N 1.47154 * 108.38570 * 187.77749 * 14 12 11 16 16 C 1.36938 * 120.98477 * 230.55949 * 15 14 12 17 17 H 1.07998 * 119.99349 * 26.23637 * 16 15 14 18 18 C 1.38807 * 120.00235 * 206.24294 * 16 15 14 19 19 N 1.31618 * 119.99929 * 16.90013 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 196.90484 * 18 16 15 21 21 H 1.48497 * 109.47180 * 60.00099 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47326 * 299.99415 * 20 18 16 24 24 C 1.47153 * 118.03649 * 50.53505 * 15 14 12 25 25 C 1.53299 * 108.38445 * 309.46670 * 24 15 14 26 26 O 1.42957 * 109.26244 * 52.27630 * 25 24 15 27 27 C 1.35375 * 126.13395 * 120.00131 * 4 2 1 28 28 H 1.08994 * 109.47296 * 59.99889 * 1 2 3 29 29 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99548 * 1 2 3 31 31 H 1.08999 * 109.46721 * 240.00124 * 2 1 3 32 32 H 1.09000 * 109.47275 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47064 * 300.00261 * 3 2 1 34 34 H 1.09006 * 109.46691 * 59.99985 * 3 2 1 35 35 H 1.07999 * 125.50360 * 0.04223 * 5 4 2 36 36 H 0.97010 * 119.99956 * 359.72489 * 10 8 7 37 37 H 1.09002 * 109.47394 * 300.00249 * 11 10 8 38 38 H 1.09002 * 109.46850 * 60.00246 * 11 10 8 39 39 H 1.08999 * 109.68355 * 307.49917 * 14 12 11 40 40 H 1.08995 * 109.68535 * 68.05430 * 14 12 11 41 41 H 0.97006 * 119.99942 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.67990 * 69.18889 * 24 15 14 43 43 H 1.09001 * 109.68139 * 189.70816 * 24 15 14 44 44 H 1.09001 * 109.51068 * 172.22467 * 25 24 15 45 45 H 1.09001 * 109.51316 * 292.33081 * 25 24 15 46 46 H 1.08000 * 126.56652 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7686 -0.3366 2.4837 6 7 2.3602 -1.1815 3.2779 7 6 3.0174 -2.1027 2.5280 8 6 3.8151 -3.2316 3.0375 9 8 4.3539 -3.9955 2.2596 10 7 3.9430 -3.4212 4.3658 11 6 4.7311 -4.5474 4.8724 12 6 4.7161 -4.5331 6.4023 13 1 5.0631 -3.5640 6.7608 14 6 5.6385 -5.6361 6.9337 15 7 5.4635 -5.7249 8.3921 16 6 6.5433 -5.7087 9.2340 17 1 7.4592 -5.2251 8.9281 18 6 6.4607 -6.3139 10.4805 19 7 5.4976 -7.1753 10.7313 20 14 7.7164 -5.9059 11.8019 21 1 7.6624 -4.4530 12.1043 22 1 7.4092 -6.6788 13.0322 23 1 9.0754 -6.2611 11.3201 24 6 4.0936 -5.8310 8.9191 25 6 3.2464 -4.7185 8.2909 26 8 3.3849 -4.7661 6.8689 27 6 2.7999 -1.7958 1.2167 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.1718 0.5070 2.7977 36 1 3.5131 -2.8119 4.9863 37 1 4.3014 -5.4825 4.5131 38 1 5.7585 -4.4601 4.5187 39 1 5.3749 -6.5884 6.4737 40 1 6.6751 -5.3907 6.7027 41 1 5.4397 -7.5980 11.6025 42 1 3.6745 -6.8030 8.6590 43 1 4.1073 -5.7152 10.0029 44 1 2.1998 -4.8621 8.5598 45 1 3.5870 -3.7503 8.6577 46 1 3.1792 -2.3316 0.3591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035459739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:27 Heat of formation + Delta-G solvation = -22.348759 kcal Electronic energy + Delta-G solvation = -26842.179395 eV Core-core repulsion = 22960.701348 eV Total energy + Delta-G solvation = -3881.478046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.20982 -40.64662 -39.81624 -36.91018 -36.49999 -35.74268 -33.38046 -32.51302 -31.94165 -30.64129 -29.18978 -28.18135 -27.25384 -25.05601 -24.34319 -24.00116 -22.99702 -21.68325 -21.41931 -20.63850 -18.91481 -18.50643 -17.58937 -17.39214 -17.15342 -16.82324 -16.61276 -16.14625 -15.74487 -15.58768 -15.50463 -15.17395 -14.99369 -14.92294 -14.78589 -14.58165 -14.33602 -14.00293 -13.60000 -13.22839 -13.15866 -13.09312 -12.99302 -12.65920 -12.53802 -12.36548 -12.18931 -12.14664 -12.09925 -11.87483 -11.40836 -11.30423 -11.05117 -10.79732 -10.73950 -10.53945 -10.15703 -9.58166 -8.75848 -7.90913 -5.38522 0.58281 1.46092 1.47131 1.49586 1.56627 1.65884 2.26488 2.49525 2.55300 2.78738 3.23738 3.43443 3.49000 3.60389 3.84756 3.95931 3.96442 4.05680 4.11933 4.16976 4.25853 4.43809 4.48522 4.52470 4.60793 4.66764 4.69663 4.71811 4.77611 4.84611 4.86823 4.88602 5.05320 5.05630 5.23744 5.25675 5.26899 5.40366 5.48434 5.54662 5.60479 6.13010 6.25624 6.32911 6.50265 6.88792 7.05771 7.23144 7.73707 8.28077 9.15172 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.002123 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.454399 B =13188.593471 C =13307.215832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.161 4.161 4 N -0.443 5.443 5 C 0.197 3.803 6 N -0.497 5.497 7 C -0.098 4.098 8 C 0.597 3.403 9 O -0.585 6.585 10 N -0.703 5.703 11 C 0.141 3.859 12 C 0.080 3.920 13 H 0.065 0.935 14 C 0.118 3.882 15 N -0.613 5.613 16 C -0.268 4.268 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.275 1.275 24 C 0.144 3.856 25 C 0.053 3.947 26 O -0.391 6.391 27 C 0.044 3.956 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.242 0.758 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.000 1.000 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.049 0.951 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 20.381 -23.218 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.088 4.088 6 N -0.216 5.216 7 C -0.226 4.226 8 C 0.385 3.615 9 O -0.466 6.466 10 N -0.353 5.353 11 C 0.017 3.983 12 C 0.020 3.980 13 H 0.083 0.917 14 C -0.008 4.008 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.802 3.198 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.201 1.201 24 C 0.018 3.982 25 C -0.024 4.024 26 O -0.310 6.310 27 C -0.097 4.097 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.258 0.742 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.038 0.962 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.067 0.933 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.412 19.781 -22.962 32.384 hybrid contribution 0.685 -0.300 0.768 1.072 sum -10.727 19.481 -22.193 31.418 Atomic orbital electron populations 1.22192 0.91733 1.03024 1.04909 1.21931 0.96534 0.94658 0.84976 1.22190 1.01558 0.93153 1.04905 1.45920 1.36433 1.20894 1.09182 1.25666 1.02719 1.01638 0.78738 1.70574 1.12088 1.04925 1.34041 1.20385 1.09370 1.00977 0.91909 1.17292 0.79116 0.83066 0.82000 1.90744 1.50722 1.47808 1.57318 1.45681 1.52496 1.30276 1.06854 1.21240 0.96669 0.89668 0.90742 1.22645 0.84166 0.98517 0.92673 0.91702 1.21587 0.98559 0.95867 0.84794 1.44337 1.02517 1.86174 1.00693 1.19525 0.94043 1.28954 0.97219 0.90947 1.25864 1.00572 0.96500 1.01775 1.70193 1.36379 1.29018 1.22565 0.85243 0.78734 0.77742 0.78122 1.20152 1.21958 1.20063 1.21310 0.83818 0.94277 0.98759 1.23167 1.00769 0.98286 0.80215 1.87816 1.27808 1.93067 1.22346 1.22781 0.96919 0.91035 0.98957 0.88090 0.92887 0.91018 0.86657 0.92784 0.88113 0.91010 0.74182 0.75064 0.91716 0.89082 0.96205 0.90761 0.93898 0.98200 0.91265 0.87412 0.93284 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 9.24 71.98 0.67 0.22 16 2 C 0.12 0.57 3.57 44.99 0.16 0.73 16 3 C -0.16 -0.40 9.24 71.98 0.67 0.27 16 4 N -0.44 -5.76 2.59 -505.87 -1.31 -7.07 16 5 C 0.20 3.05 11.53 180.10 2.08 5.13 16 6 N -0.50 -12.25 11.01 -188.82 -2.08 -14.33 16 7 C -0.10 -2.66 6.98 40.50 0.28 -2.37 16 8 C 0.60 19.58 7.81 86.63 0.68 20.26 16 9 O -0.58 -21.96 16.88 -4.08 -0.07 -22.03 16 10 N -0.70 -22.47 5.50 -466.46 -2.57 -25.04 16 11 C 0.14 4.70 5.34 86.38 0.46 5.16 16 12 C 0.08 2.95 2.81 30.69 0.09 3.04 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.12 5.16 6.02 86.35 0.52 5.68 16 15 N -0.61 -31.91 3.05 -697.55 -2.13 -34.04 16 16 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16 17 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 18 C -0.05 -2.91 4.95 84.86 0.42 -2.49 16 19 N -0.94 -55.93 11.14 21.65 0.24 -55.69 16 20 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 C 0.14 7.22 5.45 86.35 0.47 7.69 16 25 C 0.05 2.12 6.98 72.08 0.50 2.62 16 26 O -0.39 -15.49 10.33 -148.98 -1.54 -17.03 16 27 C 0.04 0.87 11.22 83.72 0.94 1.81 16 28 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.07 0.17 7.94 -2.39 -0.02 0.15 16 31 H 0.12 0.32 8.07 -2.39 -0.02 0.30 16 32 H 0.05 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.10 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.07 0.15 7.94 -2.38 -0.02 0.13 16 35 H 0.24 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.41 12.80 8.19 -92.70 -0.76 12.04 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 3.04 7.96 -2.39 -0.02 3.02 16 41 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 42 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.07 3.80 6.14 -2.39 -0.01 3.78 16 44 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -76.12 380.30 1.53 -74.58 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.22 Total: 20.00 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 8.74 Total: 33.62 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -7.84 Total: -136.18 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.61 Total: -39.06 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -76.12 1.53 -74.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035459739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds