Wall clock time and date at job start Tue Mar 31 2020 13:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47608 * 2 1 4 4 N 1.46506 * 109.46924 * 119.99803 * 2 1 3 5 5 C 1.35844 * 126.13341 * 300.02345 * 4 2 1 6 6 N 1.30173 * 109.00240 * 179.71372 * 5 4 2 7 7 C 1.35762 * 108.86809 * 0.26597 * 6 5 4 8 8 C 1.47322 * 126.23741 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00100 * 180.02562 * 8 7 6 10 10 N 1.34781 * 119.99710 * 0.03041 * 8 7 6 11 11 C 1.46502 * 119.99690 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47023 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.51437 * 60.00198 * 12 11 10 14 14 C 1.53300 * 109.51145 * 180.09784 * 12 11 10 15 15 N 1.47151 * 108.38354 * 172.22367 * 14 12 11 16 16 C 1.36938 * 120.97749 * 129.48745 * 15 14 12 17 17 H 1.08005 * 119.99981 * 206.22313 * 16 15 14 18 18 C 1.38809 * 120.00172 * 26.23182 * 16 15 14 19 19 N 1.31617 * 120.00021 * 16.90018 * 18 16 15 20 20 Si 1.86801 * 120.00016 * 196.90453 * 18 16 15 21 21 H 1.48506 * 109.47267 * 89.99787 * 20 18 16 22 22 H 1.48491 * 109.47293 * 209.99516 * 20 18 16 23 23 H 1.48500 * 109.47407 * 330.00019 * 20 18 16 24 24 C 1.47153 * 118.03744 * 309.46914 * 15 14 12 25 25 C 1.53293 * 108.38238 * 50.53353 * 24 15 14 26 26 O 1.42952 * 109.26882 * 307.72240 * 25 24 15 27 27 C 1.35376 * 126.13786 * 120.19399 * 4 2 1 28 28 H 1.09004 * 109.47425 * 300.00560 * 1 2 3 29 29 H 1.09002 * 109.46743 * 60.00372 * 1 2 3 30 30 H 1.08994 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47425 * 239.99440 * 2 1 3 32 32 H 1.08999 * 109.47451 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47011 * 300.00044 * 3 2 1 34 34 H 1.09004 * 109.47185 * 59.99293 * 3 2 1 35 35 H 1.08001 * 125.50123 * 359.97438 * 5 4 2 36 36 H 0.96995 * 120.00460 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.47162 * 299.99700 * 11 10 8 38 38 H 1.09000 * 109.47002 * 59.99523 * 11 10 8 39 39 H 1.09002 * 109.68238 * 291.95270 * 14 12 11 40 40 H 1.08999 * 109.68099 * 52.46692 * 14 12 11 41 41 H 0.97005 * 120.00094 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.67813 * 170.25830 * 24 15 14 43 43 H 1.08993 * 109.67958 * 290.77212 * 24 15 14 44 44 H 1.09003 * 109.51341 * 67.62716 * 25 24 15 45 45 H 1.09003 * 109.51304 * 187.76981 * 25 24 15 46 46 H 1.08006 * 126.56063 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7676 -0.3370 2.4837 6 7 2.3581 -1.1825 3.2781 7 6 3.0135 -2.1052 2.5283 8 6 3.8079 -3.2364 3.0379 9 8 4.3503 -3.9979 2.2601 10 7 3.9334 -3.4274 4.3662 11 6 4.7229 -4.5526 4.8730 12 6 4.7047 -4.5404 6.4028 13 1 3.6772 -4.6300 6.7554 14 6 5.5326 -5.7161 6.9341 15 7 5.6553 -5.5752 8.3937 16 6 5.3602 -6.6188 9.2298 17 1 5.0414 -6.4252 10.2434 18 6 5.4710 -7.9255 8.7747 19 7 6.1607 -8.1864 7.6845 20 14 4.6412 -9.3136 9.7096 21 1 3.2658 -9.5106 9.1854 22 1 5.4216 -10.5646 9.5339 23 1 4.5762 -8.9692 11.1526 24 6 6.1047 -4.2800 8.9283 25 6 5.2489 -3.1744 8.2997 26 8 5.2672 -3.3148 6.8773 27 6 2.8027 -1.7937 1.2170 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.1710 0.5068 2.7976 36 1 3.5011 -2.8199 4.9866 37 1 4.2958 -5.4882 4.5116 38 1 5.7508 -4.4628 4.5214 39 1 5.0319 -6.6547 6.6966 40 1 6.5230 -5.7030 6.4790 41 1 6.2385 -9.0996 7.3667 42 1 5.9829 -4.2677 10.0114 43 1 7.1530 -4.1222 8.6750 44 1 4.2236 -3.2584 8.6600 45 1 5.6533 -2.2002 8.5747 46 1 3.1849 -2.3275 0.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035459740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:31 Heat of formation + Delta-G solvation = 0.878968 kcal Electronic energy + Delta-G solvation = -27020.910892 eV Core-core repulsion = 23140.440076 eV Total energy + Delta-G solvation = -3880.470817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41678 -39.18325 -38.22332 -36.39207 -34.66375 -34.17899 -31.59769 -31.23986 -30.77433 -29.64180 -27.95850 -27.30216 -25.61800 -23.49772 -23.30910 -22.94075 -21.39842 -20.74330 -19.98229 -19.31086 -17.80170 -16.95103 -16.45919 -15.96750 -15.77597 -15.62207 -15.04607 -14.99267 -14.43901 -14.33191 -14.25104 -14.09760 -13.91411 -13.60522 -13.47485 -13.16441 -12.92167 -12.90205 -12.71054 -12.65730 -12.13530 -11.97105 -11.84961 -11.43255 -11.05066 -10.80332 -10.67104 -10.38875 -10.34127 -10.21122 -9.99774 -9.99108 -9.79974 -9.56514 -8.98659 -8.85507 -8.55446 -8.49839 -6.70818 -5.80045 -3.23753 1.53845 2.30438 2.35272 3.37857 3.44614 3.46157 3.55875 3.72050 3.93957 4.24956 4.29704 4.35593 4.40296 4.48260 4.48473 4.86326 4.97409 5.05069 5.10684 5.12949 5.28168 5.34598 5.40271 5.42618 5.48873 5.65015 5.75182 5.87762 5.95091 6.02265 6.12729 6.20965 6.30819 6.35080 6.47751 6.59191 6.79659 6.83477 6.86568 7.13912 7.54453 7.59572 7.75130 7.94457 7.97966 8.37644 8.55564 9.15244 9.78294 10.35689 11.27944 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.002348 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.905671 B =11923.565634 C =12369.221789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.454 5.454 5 C 0.184 3.816 6 N -0.460 5.460 7 C -0.056 4.056 8 C 0.598 3.402 9 O -0.552 6.552 10 N -0.704 5.704 11 C 0.133 3.867 12 C 0.056 3.944 13 H 0.056 0.944 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.051 3.949 26 O -0.388 6.388 27 C 0.030 3.970 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.206 0.794 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 19.903 -15.880 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.137 5.137 5 C -0.099 4.099 6 N -0.179 5.179 7 C -0.185 4.185 8 C 0.383 3.617 9 O -0.431 6.431 10 N -0.353 5.353 11 C 0.009 3.991 12 C -0.004 4.004 13 H 0.074 0.926 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.028 4.028 26 O -0.308 6.308 27 C -0.108 4.108 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.146 19.367 -15.808 27.372 hybrid contribution -0.682 -0.601 0.093 0.914 sum -11.829 18.766 -15.715 27.185 Atomic orbital electron populations 1.22188 0.92850 1.03539 1.03599 1.21563 0.95740 0.94197 0.86247 1.22193 1.02438 0.93967 1.03598 1.45640 1.37731 1.22111 1.08191 1.24993 1.04155 1.02072 0.78717 1.70654 1.10748 1.03885 1.32606 1.20653 1.07187 1.00223 0.90466 1.16909 0.79534 0.82705 0.82532 1.90786 1.48980 1.46549 1.56778 1.45762 1.52186 1.30920 1.06475 1.21436 0.96403 0.89001 0.92272 1.23138 0.97802 0.87725 0.91719 0.92627 1.21314 0.97127 0.95243 0.83718 1.44052 1.77261 1.08786 1.01746 1.19201 1.38768 0.84659 0.95809 0.91349 1.25061 0.98781 0.97535 0.98318 1.70023 1.40485 1.19250 1.24824 0.86245 0.79136 0.81709 0.79400 1.21359 1.21683 1.20431 1.21605 0.95764 0.87010 0.97340 1.22992 0.99477 0.98872 0.81414 1.87790 1.83114 1.38415 1.21443 1.22587 0.97714 0.90777 0.99747 0.91401 0.90242 0.91496 0.87864 0.91485 0.90243 0.91405 0.77721 0.75447 0.89966 0.90711 0.88590 0.95049 0.93425 0.92031 0.95576 0.93880 0.90071 0.79671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 9.24 37.15 0.34 -0.19 16 2 C 0.13 0.54 3.57 -67.93 -0.24 0.30 16 3 C -0.16 -0.53 9.24 37.16 0.34 -0.19 16 4 N -0.45 -3.69 2.59 -111.25 -0.29 -3.98 16 5 C 0.18 1.72 11.52 -89.91 -1.04 0.68 16 6 N -0.46 -6.16 11.01 -11.03 -0.12 -6.28 16 7 C -0.06 -0.81 6.98 -83.09 -0.58 -1.39 16 8 C 0.60 10.42 7.81 -12.56 -0.10 10.32 16 9 O -0.55 -10.99 16.88 5.26 0.09 -10.90 16 10 N -0.70 -12.15 5.45 -61.41 -0.33 -12.49 16 11 C 0.13 2.48 5.37 -4.04 -0.02 2.46 16 12 C 0.06 1.13 2.86 -26.58 -0.08 1.06 16 13 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 14 C 0.15 3.73 4.73 -3.53 -0.02 3.72 16 15 N -0.59 -15.26 3.05 -171.83 -0.52 -15.79 16 16 C -0.26 -7.05 9.65 -15.06 -0.15 -7.20 16 17 H 0.07 1.84 7.88 -52.48 -0.41 1.43 16 18 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -26.35 11.14 55.49 0.62 -25.73 16 20 Si 0.91 21.81 29.59 -169.99 -5.03 16.78 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.11 2.35 6.74 -3.53 -0.02 2.33 16 25 C 0.05 0.94 6.98 37.31 0.26 1.20 16 26 O -0.39 -7.78 10.14 -35.23 -0.36 -8.14 16 27 C 0.03 0.34 11.22 -16.64 -0.19 0.15 16 28 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 35 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.41 6.81 8.06 -40.82 -0.33 6.48 16 37 H 0.08 1.54 8.14 -51.92 -0.42 1.11 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.10 2.56 6.14 -51.93 -0.32 2.25 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.19 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -34.54 380.00 -9.14 -43.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.35 Total: 3.92 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.57 Total: 13.21 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.65 Total: -64.27 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.27 Total: -19.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.54 -9.14 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035459740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.555 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds