Wall clock time and date at job start Tue Mar 31 2020 13:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47608 * 2 1 4 4 N 1.46506 * 109.46924 * 119.99803 * 2 1 3 5 5 C 1.35844 * 126.13341 * 300.02345 * 4 2 1 6 6 N 1.30173 * 109.00240 * 179.71372 * 5 4 2 7 7 C 1.35762 * 108.86809 * 0.26597 * 6 5 4 8 8 C 1.47322 * 126.23741 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00100 * 180.02562 * 8 7 6 10 10 N 1.34781 * 119.99710 * 0.03041 * 8 7 6 11 11 C 1.46502 * 119.99690 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47023 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.51437 * 60.00198 * 12 11 10 14 14 C 1.53300 * 109.51145 * 180.09784 * 12 11 10 15 15 N 1.47151 * 108.38354 * 172.22367 * 14 12 11 16 16 C 1.36938 * 120.97749 * 129.48745 * 15 14 12 17 17 H 1.08005 * 119.99981 * 206.22313 * 16 15 14 18 18 C 1.38809 * 120.00172 * 26.23182 * 16 15 14 19 19 N 1.31617 * 120.00021 * 16.90018 * 18 16 15 20 20 Si 1.86801 * 120.00016 * 196.90453 * 18 16 15 21 21 H 1.48506 * 109.47267 * 89.99787 * 20 18 16 22 22 H 1.48491 * 109.47293 * 209.99516 * 20 18 16 23 23 H 1.48500 * 109.47407 * 330.00019 * 20 18 16 24 24 C 1.47153 * 118.03744 * 309.46914 * 15 14 12 25 25 C 1.53293 * 108.38238 * 50.53353 * 24 15 14 26 26 O 1.42952 * 109.26882 * 307.72240 * 25 24 15 27 27 C 1.35376 * 126.13786 * 120.19399 * 4 2 1 28 28 H 1.09004 * 109.47425 * 300.00560 * 1 2 3 29 29 H 1.09002 * 109.46743 * 60.00372 * 1 2 3 30 30 H 1.08994 * 109.47409 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47425 * 239.99440 * 2 1 3 32 32 H 1.08999 * 109.47451 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.47011 * 300.00044 * 3 2 1 34 34 H 1.09004 * 109.47185 * 59.99293 * 3 2 1 35 35 H 1.08001 * 125.50123 * 359.97438 * 5 4 2 36 36 H 0.96995 * 120.00460 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.47162 * 299.99700 * 11 10 8 38 38 H 1.09000 * 109.47002 * 59.99523 * 11 10 8 39 39 H 1.09002 * 109.68238 * 291.95270 * 14 12 11 40 40 H 1.08999 * 109.68099 * 52.46692 * 14 12 11 41 41 H 0.97005 * 120.00094 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.67813 * 170.25830 * 24 15 14 43 43 H 1.08993 * 109.67958 * 290.77212 * 24 15 14 44 44 H 1.09003 * 109.51341 * 67.62716 * 25 24 15 45 45 H 1.09003 * 109.51304 * 187.76981 * 25 24 15 46 46 H 1.08006 * 126.56063 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7676 -0.3370 2.4837 6 7 2.3581 -1.1825 3.2781 7 6 3.0135 -2.1052 2.5283 8 6 3.8079 -3.2364 3.0379 9 8 4.3503 -3.9979 2.2601 10 7 3.9334 -3.4274 4.3662 11 6 4.7229 -4.5526 4.8730 12 6 4.7047 -4.5404 6.4028 13 1 3.6772 -4.6300 6.7554 14 6 5.5326 -5.7161 6.9341 15 7 5.6553 -5.5752 8.3937 16 6 5.3602 -6.6188 9.2298 17 1 5.0414 -6.4252 10.2434 18 6 5.4710 -7.9255 8.7747 19 7 6.1607 -8.1864 7.6845 20 14 4.6412 -9.3136 9.7096 21 1 3.2658 -9.5106 9.1854 22 1 5.4216 -10.5646 9.5339 23 1 4.5762 -8.9692 11.1526 24 6 6.1047 -4.2800 8.9283 25 6 5.2489 -3.1744 8.2997 26 8 5.2672 -3.3148 6.8773 27 6 2.8027 -1.7937 1.2170 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.1710 0.5068 2.7976 36 1 3.5011 -2.8199 4.9866 37 1 4.2958 -5.4882 4.5116 38 1 5.7508 -4.4628 4.5214 39 1 5.0319 -6.6547 6.6966 40 1 6.5230 -5.7030 6.4790 41 1 6.2385 -9.0996 7.3667 42 1 5.9829 -4.2677 10.0114 43 1 7.1530 -4.1222 8.6750 44 1 4.2236 -3.2584 8.6600 45 1 5.6533 -2.2002 8.5747 46 1 3.1849 -2.3275 0.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035459740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:30 Heat of formation + Delta-G solvation = -22.467828 kcal Electronic energy + Delta-G solvation = -27021.923285 eV Core-core repulsion = 23140.440076 eV Total energy + Delta-G solvation = -3881.483210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21534 -40.65291 -39.81653 -36.91195 -36.45711 -35.80609 -33.26275 -32.66370 -31.95940 -30.62917 -29.06501 -28.17971 -27.33880 -25.13313 -24.31167 -23.99890 -22.96836 -21.64727 -21.41817 -20.67821 -18.94476 -18.51316 -17.53061 -17.48093 -17.12070 -16.85423 -16.60287 -16.09374 -15.74737 -15.58536 -15.51649 -15.12013 -15.08107 -14.90632 -14.78886 -14.58475 -14.34821 -14.00792 -13.64347 -13.19821 -13.15059 -13.08742 -12.99529 -12.68154 -12.53331 -12.36589 -12.17779 -12.14489 -12.08834 -11.88260 -11.39784 -11.29781 -11.06848 -10.78828 -10.74047 -10.55600 -10.17211 -9.59115 -8.76198 -7.91053 -5.38947 0.57213 1.46096 1.46397 1.48176 1.57148 1.65105 2.25107 2.48732 2.54098 2.79829 3.23381 3.42609 3.50078 3.60427 3.84438 3.96086 4.00948 4.06283 4.12314 4.18044 4.26402 4.42876 4.46624 4.51128 4.59447 4.65772 4.68715 4.69924 4.81844 4.84740 4.86894 4.96507 5.05196 5.06452 5.22221 5.25257 5.27109 5.38539 5.47724 5.51647 5.59732 6.13164 6.26383 6.32657 6.50515 6.88965 7.04862 7.22762 7.73721 8.28127 9.15032 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.002348 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.905671 B =11923.565634 C =12369.221789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 C -0.161 4.161 4 N -0.443 5.443 5 C 0.198 3.802 6 N -0.497 5.497 7 C -0.097 4.097 8 C 0.595 3.405 9 O -0.587 6.587 10 N -0.700 5.700 11 C 0.143 3.857 12 C 0.077 3.923 13 H 0.060 0.940 14 C 0.161 3.839 15 N -0.614 5.614 16 C -0.266 4.266 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.103 3.897 25 C 0.056 3.944 26 O -0.391 6.391 27 C 0.044 3.956 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.415 0.585 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.002 0.998 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.121 0.879 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 22.531 -16.250 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.086 4.086 6 N -0.216 5.216 7 C -0.225 4.225 8 C 0.383 3.617 9 O -0.468 6.468 10 N -0.350 5.350 11 C 0.019 3.981 12 C 0.017 3.983 13 H 0.078 0.922 14 C 0.034 3.966 15 N -0.339 5.339 16 C -0.396 4.396 17 H 0.093 0.907 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.190 1.190 24 C -0.022 4.022 25 C -0.021 4.021 26 O -0.310 6.310 27 C -0.097 4.097 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.260 0.740 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.020 0.980 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.296 22.059 -16.168 30.410 hybrid contribution -0.024 -1.284 0.168 1.296 sum -13.320 20.774 -16.000 29.411 Atomic orbital electron populations 1.22186 0.91619 1.03034 1.04955 1.21937 0.96607 0.94651 0.84937 1.22191 1.01520 0.93144 1.04957 1.45919 1.36273 1.20986 1.09241 1.25695 1.02608 1.01632 0.78676 1.70563 1.12148 1.04822 1.34024 1.20323 1.09424 1.00769 0.91942 1.17377 0.79184 0.83168 0.81999 1.90749 1.50612 1.48103 1.57374 1.45637 1.52027 1.30434 1.06858 1.21151 0.95979 0.89659 0.91321 1.22752 0.96886 0.86286 0.92335 0.92182 1.21075 0.95905 0.95886 0.83720 1.44350 1.77714 1.09889 1.01918 1.19569 1.38204 0.85489 0.96314 0.90744 1.25879 0.99548 0.99936 0.99414 1.70188 1.42060 1.19354 1.26561 0.85190 0.77764 0.78289 0.78739 1.21067 1.22211 1.19016 1.21819 0.95823 0.86208 0.98376 1.23094 0.99591 0.99380 0.80082 1.87803 1.83023 1.37579 1.22631 1.22762 0.96918 0.91142 0.98900 0.90902 0.88086 0.92894 0.86764 0.92881 0.88080 0.90906 0.73968 0.74914 0.90426 0.92103 0.91343 0.97995 0.93910 0.90742 0.96547 0.92943 0.86165 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 9.24 71.98 0.67 0.15 16 2 C 0.12 0.67 3.57 44.99 0.16 0.83 16 3 C -0.16 -0.52 9.24 71.98 0.67 0.15 16 4 N -0.44 -6.21 2.59 -505.87 -1.31 -7.52 16 5 C 0.20 3.22 11.52 180.10 2.08 5.29 16 6 N -0.50 -12.78 11.01 -188.82 -2.08 -14.85 16 7 C -0.10 -2.79 6.98 40.50 0.28 -2.51 16 8 C 0.59 21.31 7.81 86.63 0.68 21.98 16 9 O -0.59 -24.25 16.88 -4.09 -0.07 -24.32 16 10 N -0.70 -24.72 5.45 -466.45 -2.54 -27.26 16 11 C 0.14 5.60 5.37 86.38 0.46 6.06 16 12 C 0.08 3.18 2.86 30.69 0.09 3.27 16 13 H 0.06 2.45 8.14 -2.38 -0.02 2.44 16 14 C 0.16 8.19 4.73 86.36 0.41 8.60 16 15 N -0.61 -31.97 3.05 -697.54 -2.13 -34.10 16 16 C -0.27 -14.82 9.65 84.03 0.81 -14.01 16 17 H 0.07 3.97 7.88 -2.91 -0.02 3.95 16 18 C -0.05 -2.96 4.95 84.86 0.42 -2.54 16 19 N -0.94 -56.57 11.14 21.65 0.24 -56.33 16 20 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.10 4.38 6.74 86.35 0.58 4.96 16 25 C 0.06 1.96 6.98 72.08 0.50 2.47 16 26 O -0.39 -15.40 10.14 -148.98 -1.51 -16.91 16 27 C 0.04 0.94 11.22 83.72 0.94 1.88 16 28 H 0.07 0.19 7.94 -2.39 -0.02 0.17 16 29 H 0.10 -0.07 8.14 -2.39 -0.02 -0.08 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 0.43 8.07 -2.39 -0.02 0.41 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H 0.07 0.18 7.94 -2.39 -0.02 0.17 16 35 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.41 13.82 8.06 -92.71 -0.75 13.07 16 37 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 3.85 6.14 -2.39 -0.01 3.83 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 42 H 0.07 2.93 7.96 -2.39 -0.02 2.91 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -77.38 380.00 1.60 -75.78 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.23 Total: 21.56 kcal Atomic # 6 Polarization: 27.83 SS G_CDS: 8.74 Total: 36.57 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -7.81 Total: -140.05 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.58 Total: -41.23 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.38 1.60 -75.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035459740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.309 kcal (2) G-P(sol) polarization free energy of solvation -77.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds