Wall clock time and date at job start Tue Mar 31 2020 13:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.34265 * 125.75130 * 124.71409 * 4 3 2 6 6 C 1.38042 * 107.41376 * 179.84972 * 5 4 3 7 7 C 1.47425 * 126.41603 * 180.12342 * 6 5 4 8 8 O 1.21610 * 119.99652 * 0.32384 * 7 6 5 9 9 N 1.34774 * 120.00249 * 180.31919 * 7 6 5 10 10 C 1.46506 * 119.99915 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46779 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.51377 * 304.99503 * 11 10 9 13 13 C 1.53295 * 109.50745 * 184.89935 * 11 10 9 14 14 N 1.47156 * 108.38161 * 187.77378 * 13 11 10 15 15 C 1.36945 * 120.98117 * 230.55420 * 14 13 11 16 16 H 1.07993 * 119.99779 * 26.24262 * 15 14 13 17 17 C 1.38809 * 119.99776 * 206.23859 * 15 14 13 18 18 N 1.31620 * 120.00160 * 16.91303 * 17 15 14 19 19 Si 1.86801 * 119.99811 * 196.90589 * 17 15 14 20 20 H 1.48501 * 109.47216 * 60.00430 * 19 17 15 21 21 H 1.48497 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47400 * 300.00227 * 19 17 15 23 23 C 1.47151 * 118.03944 * 50.53379 * 14 13 11 24 24 C 1.53296 * 108.38338 * 309.46823 * 23 14 13 25 25 O 1.42957 * 109.26622 * 52.27261 * 24 23 14 26 26 C 1.41290 * 107.17109 * 0.41608 * 6 5 4 27 27 N 1.30446 * 108.02220 * 359.74423 * 26 6 5 28 28 H 1.08999 * 109.47168 * 60.00147 * 1 2 3 29 29 H 1.09003 * 109.46970 * 299.99791 * 1 2 3 30 30 H 1.09001 * 109.46466 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47168 * 119.99853 * 2 1 3 32 32 H 1.08993 * 109.46860 * 240.00287 * 2 1 3 33 33 H 1.08998 * 109.47293 * 300.00413 * 3 2 1 34 34 H 1.09002 * 109.46712 * 59.99983 * 3 2 1 35 35 H 1.07995 * 126.29155 * 0.02562 * 5 4 3 36 36 H 0.96993 * 120.00383 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46753 * 299.99987 * 10 9 7 38 38 H 1.08997 * 109.46957 * 60.00303 * 10 9 7 39 39 H 1.08995 * 109.68260 * 307.49347 * 13 11 10 40 40 H 1.09005 * 109.68674 * 68.01576 * 13 11 10 41 41 H 0.96996 * 119.99745 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.67911 * 69.18630 * 23 14 13 43 43 H 1.08994 * 109.68291 * 189.70324 * 23 14 13 44 44 H 1.08994 * 109.51492 * 172.22502 * 24 23 14 45 45 H 1.09007 * 109.51277 * 292.37589 * 24 23 14 46 46 H 1.08005 * 125.99018 * 179.76253 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2898 2.0631 -0.8948 6 6 5.6000 1.8188 -0.5353 7 6 6.8042 2.3064 -1.2320 8 8 6.6933 3.0010 -2.2240 9 7 8.0280 1.9825 -0.7696 10 6 9.2247 2.4676 -1.4617 11 6 10.4734 1.9598 -0.7379 12 1 10.4302 2.2520 0.3113 13 6 11.7231 2.5654 -1.3871 14 7 12.9091 1.9214 -0.8005 15 6 13.9449 2.6684 -0.3060 16 1 13.7645 3.6710 0.0525 17 6 15.2265 2.1369 -0.2656 18 7 15.5221 1.0761 -0.9865 19 14 16.5319 2.9273 0.8118 20 1 16.0874 2.9001 2.2285 21 1 17.8058 2.1761 0.6777 22 1 16.7403 4.3343 0.3854 23 6 12.9491 0.4509 -0.7604 24 6 11.6396 -0.0516 -0.1419 25 8 10.5351 0.5348 -0.8347 26 6 5.5708 1.0082 0.6216 27 7 4.3223 0.7911 0.9309 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9572 2.6483 -1.7393 36 1 8.1165 1.4282 0.0215 37 1 9.2250 2.0998 -2.4878 38 1 9.2249 3.5575 -1.4663 39 1 11.7020 2.3861 -2.4620 40 1 11.7539 3.6378 -1.1943 41 1 16.4178 0.7049 -0.9585 42 1 13.0513 0.0589 -1.7723 43 1 13.7924 0.1230 -0.1527 44 1 11.5889 -1.1369 -0.2286 45 1 11.6010 0.2325 0.9098 46 1 6.4314 0.6341 1.1563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035522415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:28 Heat of formation + Delta-G solvation = 12.604785 kcal Electronic energy + Delta-G solvation = -26583.078810 eV Core-core repulsion = 22703.116463 eV Total energy + Delta-G solvation = -3879.962347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.59307 -39.26179 -38.28367 -35.81532 -34.82779 -34.23409 -32.16576 -31.51291 -30.83870 -30.19275 -27.67155 -26.86483 -25.37294 -23.23269 -22.83348 -22.66148 -21.60623 -20.88730 -20.19943 -19.49323 -18.11046 -16.91761 -16.30395 -16.10861 -15.85041 -15.74058 -15.25287 -14.95069 -14.79854 -14.50953 -14.31374 -14.04567 -13.73307 -13.63790 -13.19451 -13.12338 -12.94611 -12.81595 -12.70012 -12.48975 -12.25239 -11.92633 -11.55393 -11.47981 -11.13196 -11.10575 -10.83028 -10.71803 -10.38690 -10.28490 -9.97589 -9.84622 -9.84037 -9.62353 -9.05967 -9.04031 -8.72229 -8.53718 -6.75039 -5.84111 -3.27676 1.35304 2.01004 2.03263 3.35115 3.37562 3.41412 3.42700 3.51302 3.98178 4.27225 4.28479 4.43654 4.46008 4.52571 4.67296 4.78031 4.91378 5.00852 5.08482 5.17555 5.22713 5.33316 5.45482 5.48076 5.52939 5.54032 5.58920 5.69515 5.83294 5.91695 6.06939 6.16846 6.20269 6.31724 6.38740 6.50438 6.54088 6.62421 6.77551 7.11440 7.28518 7.52355 7.69719 7.71103 7.87610 8.33631 8.39811 9.11620 9.74394 10.31282 11.23994 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.002026 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.083535 B =13815.861600 C =14045.569606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.363 5.363 5 C 0.125 3.875 6 C -0.289 4.289 7 C 0.592 3.408 8 O -0.557 6.557 9 N -0.716 5.716 10 C 0.133 3.867 11 C 0.065 3.935 12 H 0.059 0.941 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.389 6.389 26 C 0.083 3.917 27 N -0.296 5.296 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.187 0.813 36 H 0.401 0.599 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.048 -1.572 3.196 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.142 5.142 5 C -0.026 4.026 6 C -0.304 4.304 7 C 0.380 3.620 8 O -0.436 6.436 9 N -0.366 5.366 10 C 0.009 3.991 11 C 0.005 3.995 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.308 6.308 26 C -0.105 4.105 27 N -0.116 5.116 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.204 0.796 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -28.007 -1.827 3.192 28.247 hybrid contribution 1.659 0.562 0.455 1.809 sum -26.348 -1.266 3.647 26.629 Atomic orbital electron populations 1.21714 0.94268 1.02669 1.02179 1.21814 0.96522 0.95164 1.04037 1.21936 0.73475 0.99412 1.04277 1.48599 1.06890 1.38239 1.20457 1.22977 0.90130 0.95232 0.94289 1.20306 0.93526 1.13364 1.03198 1.17210 0.82242 0.79414 0.83177 1.90763 1.86986 1.39429 1.26451 1.45703 1.05218 1.53784 1.31895 1.21401 0.81871 0.98881 0.96952 1.22808 0.94840 0.82846 0.99019 0.92345 1.21446 0.86742 0.96630 0.95752 1.44059 1.16886 1.01372 1.69434 1.19160 0.86209 0.98926 1.34223 0.91375 1.25044 0.96927 0.98633 0.99026 1.70024 1.20014 1.24929 1.39737 0.86319 0.80824 0.78729 0.80590 1.20993 1.21568 1.20800 1.21445 0.94351 0.83693 0.99169 1.23320 0.88628 0.96757 0.95118 1.87794 1.48498 1.19046 1.75493 1.24121 0.95347 0.95974 0.95085 1.77138 1.01804 1.19117 1.13541 0.92336 0.92237 0.91827 0.90200 0.91231 0.88268 0.89301 0.79596 0.76442 0.90657 0.90120 0.95209 0.91768 0.93450 0.95385 0.88791 0.90069 0.94112 0.79285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.14 -0.73 6.11 -26.73 -0.16 -0.89 16 3 C 0.13 0.69 6.49 -4.04 -0.03 0.67 16 4 N -0.36 -3.29 3.65 -60.81 -0.22 -3.51 16 5 C 0.12 1.23 11.25 -16.56 -0.19 1.05 16 6 C -0.29 -3.42 6.13 -105.07 -0.64 -4.06 16 7 C 0.59 8.51 7.81 -12.52 -0.10 8.42 16 8 O -0.56 -9.77 16.90 5.27 0.09 -9.68 16 9 N -0.72 -9.70 5.50 -61.38 -0.34 -10.03 16 10 C 0.13 2.02 5.34 -4.04 -0.02 2.00 16 11 C 0.06 1.12 2.81 -26.58 -0.07 1.05 16 12 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 13 C 0.12 2.52 6.02 -3.53 -0.02 2.50 16 14 N -0.59 -14.76 3.05 -171.83 -0.52 -15.28 16 15 C -0.26 -6.92 9.65 -15.06 -0.15 -7.07 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 17 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 18 N -0.90 -25.89 11.14 55.49 0.62 -25.27 16 19 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.14 3.29 5.45 -3.53 -0.02 3.27 16 24 C 0.04 0.75 6.98 37.31 0.26 1.01 16 25 O -0.39 -7.21 10.33 -35.23 -0.36 -7.58 16 26 C 0.08 0.87 11.50 -16.98 -0.20 0.68 16 27 N -0.30 -3.26 12.33 30.86 0.38 -2.88 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.30 8.06 -51.93 -0.42 -0.12 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.19 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.40 4.68 7.43 -40.82 -0.30 4.38 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.19 1.51 7.50 -52.48 -0.39 1.12 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.76 381.40 -8.01 -41.77 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.32 Total: 1.94 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.05 Total: 8.44 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.08 Total: -56.97 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.28 Total: -17.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.76 -8.01 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035522415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.373 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds