Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.34265 * 125.75130 * 124.71409 * 4 3 2 6 6 C 1.38042 * 107.41376 * 179.84972 * 5 4 3 7 7 C 1.47425 * 126.41603 * 180.12342 * 6 5 4 8 8 O 1.21610 * 119.99652 * 0.32384 * 7 6 5 9 9 N 1.34774 * 120.00249 * 180.31919 * 7 6 5 10 10 C 1.46506 * 119.99915 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46779 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.51377 * 304.99503 * 11 10 9 13 13 C 1.53295 * 109.50745 * 184.89935 * 11 10 9 14 14 N 1.47156 * 108.38161 * 187.77378 * 13 11 10 15 15 C 1.36945 * 120.98117 * 230.55420 * 14 13 11 16 16 H 1.07993 * 119.99779 * 26.24262 * 15 14 13 17 17 C 1.38809 * 119.99776 * 206.23859 * 15 14 13 18 18 N 1.31620 * 120.00160 * 16.91303 * 17 15 14 19 19 Si 1.86801 * 119.99811 * 196.90589 * 17 15 14 20 20 H 1.48501 * 109.47216 * 60.00430 * 19 17 15 21 21 H 1.48497 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47400 * 300.00227 * 19 17 15 23 23 C 1.47151 * 118.03944 * 50.53379 * 14 13 11 24 24 C 1.53296 * 108.38338 * 309.46823 * 23 14 13 25 25 O 1.42957 * 109.26622 * 52.27261 * 24 23 14 26 26 C 1.41290 * 107.17109 * 0.41608 * 6 5 4 27 27 N 1.30446 * 108.02220 * 359.74423 * 26 6 5 28 28 H 1.08999 * 109.47168 * 60.00147 * 1 2 3 29 29 H 1.09003 * 109.46970 * 299.99791 * 1 2 3 30 30 H 1.09001 * 109.46466 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47168 * 119.99853 * 2 1 3 32 32 H 1.08993 * 109.46860 * 240.00287 * 2 1 3 33 33 H 1.08998 * 109.47293 * 300.00413 * 3 2 1 34 34 H 1.09002 * 109.46712 * 59.99983 * 3 2 1 35 35 H 1.07995 * 126.29155 * 0.02562 * 5 4 3 36 36 H 0.96993 * 120.00383 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46753 * 299.99987 * 10 9 7 38 38 H 1.08997 * 109.46957 * 60.00303 * 10 9 7 39 39 H 1.08995 * 109.68260 * 307.49347 * 13 11 10 40 40 H 1.09005 * 109.68674 * 68.01576 * 13 11 10 41 41 H 0.96996 * 119.99745 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.67911 * 69.18630 * 23 14 13 43 43 H 1.08994 * 109.68291 * 189.70324 * 23 14 13 44 44 H 1.08994 * 109.51492 * 172.22502 * 24 23 14 45 45 H 1.09007 * 109.51277 * 292.37589 * 24 23 14 46 46 H 1.08005 * 125.99018 * 179.76253 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2898 2.0631 -0.8948 6 6 5.6000 1.8188 -0.5353 7 6 6.8042 2.3064 -1.2320 8 8 6.6933 3.0010 -2.2240 9 7 8.0280 1.9825 -0.7696 10 6 9.2247 2.4676 -1.4617 11 6 10.4734 1.9598 -0.7379 12 1 10.4302 2.2520 0.3113 13 6 11.7231 2.5654 -1.3871 14 7 12.9091 1.9214 -0.8005 15 6 13.9449 2.6684 -0.3060 16 1 13.7645 3.6710 0.0525 17 6 15.2265 2.1369 -0.2656 18 7 15.5221 1.0761 -0.9865 19 14 16.5319 2.9273 0.8118 20 1 16.0874 2.9001 2.2285 21 1 17.8058 2.1761 0.6777 22 1 16.7403 4.3343 0.3854 23 6 12.9491 0.4509 -0.7604 24 6 11.6396 -0.0516 -0.1419 25 8 10.5351 0.5348 -0.8347 26 6 5.5708 1.0082 0.6216 27 7 4.3223 0.7911 0.9309 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9572 2.6483 -1.7393 36 1 8.1165 1.4282 0.0215 37 1 9.2250 2.0998 -2.4878 38 1 9.2249 3.5575 -1.4663 39 1 11.7020 2.3861 -2.4620 40 1 11.7539 3.6378 -1.1943 41 1 16.4178 0.7049 -0.9585 42 1 13.0513 0.0589 -1.7723 43 1 13.7924 0.1230 -0.1527 44 1 11.5889 -1.1369 -0.2286 45 1 11.6010 0.2325 0.9098 46 1 6.4314 0.6341 1.1563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035522415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = -10.754181 kcal Electronic energy + Delta-G solvation = -26584.091731 eV Core-core repulsion = 22703.116463 eV Total energy + Delta-G solvation = -3880.975268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.36674 -40.53585 -39.71508 -36.46828 -36.30712 -35.69480 -33.38164 -32.79772 -32.24710 -31.18714 -29.22496 -27.77716 -26.73609 -24.97522 -23.98322 -23.30683 -22.81797 -21.67025 -21.50261 -20.75933 -19.05382 -18.77086 -17.51097 -17.12546 -16.98709 -16.77277 -16.60839 -16.13130 -15.99458 -15.54048 -15.47601 -15.29611 -15.25918 -14.95889 -14.56077 -14.31130 -14.11370 -13.80511 -13.60640 -13.19290 -13.18969 -12.97427 -12.89879 -12.64479 -12.51916 -12.37519 -12.17549 -12.09790 -12.05421 -11.84657 -11.67283 -11.30534 -10.92997 -10.76866 -10.56739 -10.51696 -10.14159 -9.61777 -8.73764 -7.89821 -5.37085 0.55059 1.17432 1.39561 1.48276 1.49991 1.57166 2.28410 2.49769 2.50806 2.81958 3.25126 3.42958 3.51939 3.79540 3.90795 3.93732 4.03197 4.09255 4.14307 4.27273 4.29135 4.32633 4.50504 4.53290 4.56625 4.59905 4.65542 4.72462 4.75351 4.81783 4.86341 4.93403 5.09805 5.12633 5.16056 5.26983 5.36129 5.40541 5.48766 5.57226 5.62778 5.89246 6.27902 6.35529 6.50334 6.67269 7.07583 7.31680 7.75908 8.29526 9.16048 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.002026 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.083535 B =13815.861600 C =14045.569606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.120 3.880 4 N -0.357 5.357 5 C 0.133 3.867 6 C -0.315 4.315 7 C 0.594 3.406 8 O -0.594 6.594 9 N -0.709 5.709 10 C 0.144 3.856 11 C 0.080 3.920 12 H 0.071 0.929 13 C 0.116 3.884 14 N -0.612 5.612 15 C -0.267 4.267 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.142 3.858 24 C 0.054 3.946 25 O -0.389 6.389 26 C 0.084 3.916 27 N -0.319 5.319 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.208 0.792 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.251 0.749 42 H -0.002 1.002 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.189 -1.032 4.370 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.019 4.019 6 C -0.330 4.330 7 C 0.383 3.617 8 O -0.477 6.477 9 N -0.360 5.360 10 C 0.019 3.981 11 C 0.020 3.980 12 H 0.089 0.911 13 C -0.010 4.010 14 N -0.337 5.337 15 C -0.397 4.397 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.202 1.202 23 C 0.017 3.983 24 C -0.024 4.024 25 O -0.308 6.308 26 C -0.103 4.103 27 N -0.139 5.139 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.225 0.775 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.070 0.930 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -30.200 -1.300 4.402 30.546 hybrid contribution 2.229 0.408 0.036 2.267 sum -27.970 -0.893 4.438 28.334 Atomic orbital electron populations 1.21686 0.92683 1.02901 1.03097 1.21740 0.97788 0.94893 1.02584 1.22328 0.71438 0.99793 1.06307 1.48909 1.08027 1.37065 1.19505 1.23332 0.89746 0.94443 0.94425 1.20193 0.93244 1.15255 1.04312 1.17511 0.82844 0.78652 0.82661 1.90738 1.87484 1.41262 1.28169 1.45568 1.04570 1.53785 1.32040 1.21165 0.81715 0.99189 0.96013 1.22648 0.93931 0.81995 0.99432 0.91148 1.21609 0.86909 0.97321 0.95185 1.44334 1.17590 1.01874 1.69873 1.19530 0.87019 0.99320 1.33800 0.90920 1.25828 0.98985 0.99416 1.00346 1.70188 1.20142 1.26501 1.41353 0.85278 0.77892 0.77813 0.79072 1.20100 1.22093 1.20174 1.21320 0.96202 0.83466 0.97344 1.23153 0.86003 0.98138 0.95060 1.87811 1.47810 1.19651 1.75545 1.24428 0.95906 0.95326 0.94646 1.77110 1.02179 1.19999 1.14589 0.91124 0.91586 0.91992 0.92091 0.92244 0.85355 0.88189 0.77538 0.75190 0.92037 0.89335 0.96472 0.90890 0.93960 0.98409 0.91424 0.87404 0.92974 0.77427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 71.98 0.71 -0.01 16 2 C -0.13 -1.20 6.11 30.60 0.19 -1.02 16 3 C 0.12 1.00 6.49 86.38 0.56 1.56 16 4 N -0.36 -5.77 3.65 -346.30 -1.26 -7.03 16 5 C 0.13 2.38 11.25 84.27 0.95 3.33 16 6 C -0.32 -6.99 6.13 -20.15 -0.12 -7.11 16 7 C 0.59 16.42 7.81 86.66 0.68 17.09 16 8 O -0.59 -20.47 16.90 -4.06 -0.07 -20.54 16 9 N -0.71 -18.14 5.50 -466.36 -2.56 -20.70 16 10 C 0.14 4.21 5.34 86.38 0.46 4.67 16 11 C 0.08 2.64 2.81 30.69 0.09 2.73 16 12 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 13 C 0.12 4.79 6.02 86.35 0.52 5.31 16 14 N -0.61 -30.64 3.05 -697.55 -2.13 -32.77 16 15 C -0.27 -14.48 9.65 84.03 0.81 -13.67 16 16 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 17 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 18 N -0.94 -54.96 11.14 21.65 0.24 -54.72 16 19 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.14 6.84 5.45 86.35 0.47 7.31 16 24 C 0.05 1.98 6.98 72.08 0.50 2.48 16 25 O -0.39 -13.81 10.33 -148.98 -1.54 -15.35 16 26 C 0.08 1.65 11.50 85.65 0.99 2.63 16 27 N -0.32 -6.53 12.33 -56.27 -0.69 -7.22 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 0.33 8.06 -2.39 -0.02 0.31 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.41 8.75 7.43 -92.71 -0.69 8.06 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 2.83 7.96 -2.38 -0.02 2.81 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 44 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.21 2.91 7.50 -2.91 -0.02 2.89 16 Total: -1.00 -73.48 381.40 1.52 -71.96 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.29 Total: 17.26 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.22 Total: 22.96 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.41 Total: -122.44 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.61 Total: -35.88 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.48 1.52 -71.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035522415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.205 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds