Wall clock time and date at job start Tue Mar 31 2020 13:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46564 * 2 1 4 4 N 1.46503 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.34259 * 125.75093 * 125.00074 * 4 3 2 6 6 C 1.38050 * 107.41471 * 180.02562 * 5 4 3 7 7 C 1.47425 * 126.41412 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99903 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00187 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00194 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46847 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.50946 * 60.10345 * 11 10 9 13 13 C 1.53717 * 109.48148 * 180.36236 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.39943 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38812 * 119.99878 * 153.49544 * 15 14 13 18 18 N 1.31622 * 120.00058 * 343.08256 * 17 15 14 19 19 Si 1.86803 * 119.99905 * 162.80886 * 17 15 14 20 20 H 1.48497 * 109.46927 * 90.00263 * 19 17 15 21 21 H 1.48506 * 109.46836 * 209.99902 * 19 17 15 22 22 H 1.48490 * 109.47352 * 329.99799 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 C 1.41293 * 107.16804 * 0.24056 * 6 5 4 27 27 N 1.30446 * 108.02602 * 359.59415 * 26 6 5 28 28 H 1.09004 * 109.46612 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47246 * 299.99467 * 1 2 3 30 30 H 1.09000 * 109.47400 * 60.00039 * 1 2 3 31 31 H 1.09000 * 109.47246 * 240.00533 * 2 1 3 32 32 H 1.09000 * 109.47400 * 119.99961 * 2 1 3 33 33 H 1.09000 * 109.46904 * 60.00323 * 3 2 1 34 34 H 1.08997 * 109.47428 * 300.00563 * 3 2 1 35 35 H 1.07998 * 126.29400 * 0.02804 * 5 4 3 36 36 H 0.97001 * 119.99690 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.46958 * 60.00489 * 10 9 7 38 38 H 1.08997 * 109.46760 * 300.00352 * 10 9 7 39 39 H 1.08999 * 109.83737 * 52.72102 * 13 11 10 40 40 H 1.09001 * 109.74797 * 292.02541 * 13 11 10 41 41 H 0.96999 * 120.00005 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 43 43 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 44 44 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 45 45 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 46 46 H 1.08001 * 125.98104 * 179.73545 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.2890 2.0678 -0.8934 6 6 5.5995 1.8183 -0.5386 7 6 6.8031 2.3058 -1.2364 8 8 6.6914 3.0008 -2.2280 9 7 8.0273 1.9822 -0.7748 10 6 9.2234 2.4663 -1.4686 11 6 10.4727 1.9591 -0.7455 12 1 10.4735 0.8691 -0.7413 13 6 11.7279 2.4743 -1.4679 14 7 12.9019 2.1273 -0.6515 15 6 13.9817 1.4917 -1.2039 16 1 13.8532 0.8683 -2.0764 17 6 15.2415 1.6487 -0.6425 18 7 15.4716 2.6412 0.1908 19 14 16.6080 0.4468 -1.0638 20 1 17.3496 0.9376 -2.2531 21 1 17.5390 0.3325 0.0876 22 1 16.0220 -0.8849 -1.3606 23 6 12.8839 2.4891 0.7747 24 6 11.5747 1.9780 1.3868 25 8 10.4747 2.4419 0.6001 26 6 5.5712 1.0029 0.6150 27 7 4.3230 0.7907 0.9288 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.9556 2.6576 -1.7345 36 1 8.1164 1.4282 0.0164 37 1 9.2239 3.5563 -1.4744 38 1 9.2226 2.0975 -2.4943 39 1 11.6692 3.5564 -1.5852 40 1 11.8091 2.0023 -2.4471 41 1 16.3521 2.7510 0.5828 42 1 13.7310 2.0269 1.2815 43 1 12.9402 3.5726 0.8794 44 1 11.5796 0.8880 1.3987 45 1 11.4783 2.3529 2.4056 46 1 6.4323 0.6239 1.1454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035522416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:30 Heat of formation + Delta-G solvation = -10.635813 kcal Electronic energy + Delta-G solvation = -26591.869746 eV Core-core repulsion = 22710.899611 eV Total energy + Delta-G solvation = -3880.970135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36388 -40.52790 -39.70460 -36.47222 -36.30523 -35.67555 -33.37452 -32.79519 -32.23753 -31.18152 -29.22669 -27.77280 -26.73682 -24.96963 -23.97817 -23.30227 -22.80687 -21.66265 -21.49540 -20.76893 -19.05581 -18.76962 -17.50858 -17.10659 -16.98966 -16.75939 -16.63024 -16.15436 -15.91106 -15.58420 -15.47642 -15.38040 -15.16746 -14.95904 -14.56979 -14.30494 -14.11335 -13.80347 -13.60324 -13.20067 -13.17720 -12.98058 -12.89791 -12.66683 -12.48646 -12.37172 -12.17819 -12.08256 -12.05331 -11.85009 -11.67088 -11.30516 -10.92183 -10.77366 -10.56631 -10.51815 -10.13341 -9.61380 -8.73549 -7.90108 -5.37245 0.55266 1.17647 1.39607 1.47444 1.48783 1.58674 2.28229 2.49929 2.50965 2.82629 3.25135 3.43170 3.52385 3.79764 3.90906 3.94053 4.03596 4.08783 4.14583 4.27203 4.28875 4.32866 4.50796 4.53482 4.55981 4.59963 4.66483 4.73363 4.76067 4.82026 4.86662 4.93778 5.09882 5.12601 5.16273 5.26998 5.36308 5.40846 5.49138 5.57380 5.62891 5.89379 6.27737 6.35586 6.50566 6.67941 7.07513 7.32177 7.75828 8.29518 9.15826 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.002023 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.158007 B =13840.303946 C =13997.813928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.120 3.880 4 N -0.357 5.357 5 C 0.133 3.867 6 C -0.315 4.315 7 C 0.594 3.406 8 O -0.594 6.594 9 N -0.708 5.708 10 C 0.144 3.856 11 C 0.080 3.920 12 H 0.070 0.930 13 C 0.116 3.884 14 N -0.612 5.612 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.268 1.268 23 C 0.142 3.858 24 C 0.054 3.946 25 O -0.388 6.388 26 C 0.084 3.916 27 N -0.319 5.319 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.208 0.792 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.072 0.928 41 H 0.251 0.749 42 H 0.067 0.933 43 H -0.002 1.002 44 H 0.052 0.948 45 H 0.108 0.892 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.086 -5.216 1.276 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.019 4.019 6 C -0.330 4.330 7 C 0.383 3.617 8 O -0.477 6.477 9 N -0.359 5.359 10 C 0.019 3.981 11 C 0.020 3.980 12 H 0.088 0.912 13 C -0.010 4.010 14 N -0.337 5.337 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.193 1.193 23 C 0.017 3.983 24 C -0.023 4.023 25 O -0.308 6.308 26 C -0.103 4.103 27 N -0.139 5.139 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.225 0.775 36 H 0.248 0.752 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.070 0.930 45 H 0.126 0.874 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -30.113 -5.161 1.572 30.593 hybrid contribution 2.272 -0.123 -0.398 2.309 sum -27.842 -5.284 1.174 28.363 Atomic orbital electron populations 1.21687 0.92709 1.02910 1.03079 1.21735 0.97755 0.94828 1.02619 1.22329 0.71444 0.99852 1.06270 1.48909 1.08025 1.36969 1.19608 1.23331 0.89751 0.94367 0.94494 1.20197 0.93253 1.15053 1.04505 1.17510 0.82849 0.78631 0.82702 1.90735 1.87473 1.41095 1.28374 1.45548 1.04540 1.53842 1.31967 1.21184 0.81744 0.99465 0.95706 1.22737 0.93936 0.98043 0.83289 0.91165 1.21698 0.87079 0.97238 0.95022 1.44358 1.15698 1.68595 1.05022 1.19555 0.86342 1.20899 1.12787 0.90929 1.25834 0.99373 0.98820 1.00590 1.70193 1.22008 1.30564 1.35440 0.85226 0.78788 0.79241 0.76866 1.21263 1.21804 1.19277 1.21319 0.96260 0.95962 0.84793 1.23149 0.86099 0.98367 0.94699 1.87800 1.46855 1.73615 1.22481 1.24425 0.95908 0.95419 0.94546 1.77113 1.02151 1.20173 1.14441 0.91954 0.91648 0.91121 0.92141 0.92092 0.88297 0.85354 0.77531 0.75160 0.92083 0.89330 0.96459 0.90911 0.93963 0.91458 0.98428 0.92961 0.87359 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 71.98 0.71 0.00 16 2 C -0.13 -1.17 6.11 30.60 0.19 -0.99 16 3 C 0.12 1.01 6.49 86.38 0.56 1.57 16 4 N -0.36 -5.79 3.65 -346.29 -1.26 -7.06 16 5 C 0.13 2.39 11.25 84.28 0.95 3.34 16 6 C -0.32 -7.02 6.13 -20.15 -0.12 -7.15 16 7 C 0.59 16.47 7.81 86.66 0.68 17.15 16 8 O -0.59 -20.50 16.90 -4.04 -0.07 -20.56 16 9 N -0.71 -18.22 5.44 -466.38 -2.54 -20.76 16 10 C 0.14 4.20 5.37 86.38 0.46 4.67 16 11 C 0.08 2.64 2.88 30.84 0.09 2.73 16 12 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 13 C 0.12 4.78 6.05 86.50 0.52 5.31 16 14 N -0.61 -30.63 3.04 -696.73 -2.12 -32.75 16 15 C -0.27 -14.43 9.65 84.03 0.81 -13.62 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 18 N -0.94 -54.97 11.14 21.65 0.24 -54.73 16 19 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 C 0.14 6.83 5.44 86.35 0.47 7.30 16 24 C 0.05 1.98 6.99 72.08 0.50 2.49 16 25 O -0.39 -13.68 10.13 -148.98 -1.51 -15.19 16 26 C 0.08 1.66 11.50 85.65 0.99 2.65 16 27 N -0.32 -6.56 12.33 -56.27 -0.69 -7.25 16 28 H 0.06 0.33 8.14 -2.38 -0.02 0.32 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.34 8.06 -2.39 -0.02 0.32 16 35 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.41 8.89 7.30 -92.71 -0.68 8.22 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.07 3.57 6.14 -2.39 -0.01 3.56 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.21 2.95 7.50 -2.91 -0.02 2.93 16 Total: -1.00 -73.43 381.13 1.61 -71.82 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.30 Total: 17.26 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 7.23 Total: 23.05 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.37 Total: -122.55 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.58 Total: -35.75 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.43 1.61 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035522416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.189 kcal (2) G-P(sol) polarization free energy of solvation -73.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds