Wall clock time and date at job start Tue Mar 31 2020 13:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47349 * 2 1 4 4 N 1.46502 * 109.47110 * 120.00311 * 2 1 3 5 5 C 1.35037 * 124.88298 * 274.72033 * 4 2 1 6 6 C 1.35363 * 107.23119 * 179.89360 * 5 4 2 7 7 C 1.41508 * 105.49768 * 0.34836 * 6 5 4 8 8 C 1.47713 * 126.51235 * 179.79628 * 7 6 5 9 9 O 1.21571 * 120.00477 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99868 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00173 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47240 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50900 * 305.00077 * 12 11 10 14 14 C 1.53293 * 109.51231 * 184.90433 * 12 11 10 15 15 N 1.47149 * 108.38552 * 187.77509 * 14 12 11 16 16 C 1.36935 * 120.98160 * 230.55747 * 15 14 12 17 17 H 1.08003 * 120.00350 * 26.23263 * 16 15 14 18 18 C 1.38813 * 119.99798 * 206.23127 * 16 15 14 19 19 N 1.31620 * 120.00397 * 16.92205 * 18 16 15 20 20 Si 1.86801 * 119.99949 * 196.91361 * 18 16 15 21 21 H 1.48500 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47024 * 120.00471 * 20 18 16 23 23 H 1.48500 * 109.47502 * 240.00125 * 20 18 16 24 24 C 1.47154 * 118.03756 * 50.52889 * 15 14 12 25 25 C 1.53297 * 108.38527 * 309.47254 * 24 15 14 26 26 O 1.42956 * 109.26584 * 52.27329 * 25 24 15 27 27 N 1.28467 * 124.88538 * 95.02245 * 4 2 1 28 28 H 1.09000 * 109.46767 * 60.00152 * 1 2 3 29 29 H 1.08998 * 109.46960 * 300.00167 * 1 2 3 30 30 H 1.09002 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47058 * 239.99642 * 2 1 3 32 32 H 1.08998 * 109.47226 * 59.99995 * 3 2 1 33 33 H 1.09001 * 109.47317 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47062 * 299.99668 * 3 2 1 35 35 H 1.08001 * 126.38363 * 359.97438 * 5 4 2 36 36 H 1.07996 * 127.24771 * 180.16270 * 6 5 4 37 37 H 0.96999 * 119.99645 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47280 * 300.00730 * 11 10 8 39 39 H 1.09008 * 109.46822 * 60.00373 * 11 10 8 40 40 H 1.09002 * 109.68301 * 307.49524 * 14 12 11 41 41 H 1.09004 * 109.68582 * 68.01002 * 14 12 11 42 42 H 0.96996 * 120.00790 * 180.02562 * 19 18 16 43 43 H 1.09009 * 109.67777 * 69.19144 * 24 15 14 44 44 H 1.08997 * 109.68362 * 189.70355 * 24 15 14 45 45 H 1.08997 * 109.50979 * 172.22487 * 25 24 15 46 46 H 1.08996 * 109.50776 * 292.37546 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1898 -0.1139 2.4050 6 6 2.6494 -1.0712 3.2445 7 6 2.7478 -2.2456 2.4611 8 6 3.2083 -3.5720 2.9198 9 8 3.5492 -3.7309 4.0759 10 7 3.2495 -4.6065 2.0569 11 6 3.7067 -5.9219 2.5116 12 6 3.6575 -6.9104 1.3447 13 1 2.6538 -6.9224 0.9199 14 6 4.0180 -8.3133 1.8466 15 7 4.1469 -9.2038 0.6822 16 6 3.4907 -10.4048 0.6373 17 1 2.5796 -10.5438 1.2004 18 6 3.9964 -11.4436 -0.1321 19 7 5.2457 -11.4093 -0.5447 20 14 2.9038 -12.8905 -0.5818 21 1 1.5523 -12.6899 0.0001 22 1 2.7963 -12.9892 -2.0596 23 1 3.4939 -14.1425 -0.0437 24 6 5.0014 -8.7653 -0.4327 25 6 4.5930 -7.3404 -0.8234 26 8 4.5957 -6.5126 0.3421 27 7 2.3502 -1.9308 1.2445 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.9952 0.9184 2.6558 36 1 2.8928 -0.9611 4.2909 37 1 2.9772 -4.4798 1.1346 38 1 4.7301 -5.8440 2.8785 39 1 3.0588 -6.2743 3.3143 40 1 4.9633 -8.2778 2.3880 41 1 3.2312 -8.6810 2.5054 42 1 5.5991 -12.1350 -1.0826 43 1 6.0458 -8.7754 -0.1206 44 1 4.8661 -9.4330 -1.2835 45 1 5.3011 -6.9456 -1.5520 46 1 3.5931 -7.3542 -1.2569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035526701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:34 Heat of formation + Delta-G solvation = 21.348863 kcal Electronic energy + Delta-G solvation = -27036.800251 eV Core-core repulsion = 23157.217076 eV Total energy + Delta-G solvation = -3879.583175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.86516 -39.37782 -38.31534 -36.20240 -34.83343 -34.22704 -31.64583 -31.10994 -30.94362 -30.13769 -27.93327 -27.50152 -25.74770 -24.02734 -23.15559 -22.65631 -21.57604 -20.63032 -20.09310 -19.43596 -18.00768 -17.03402 -16.75677 -16.25926 -15.96662 -15.69014 -15.07831 -14.93945 -14.59047 -14.34284 -14.22572 -13.98972 -13.74323 -13.45996 -13.42637 -13.14030 -12.98014 -12.82791 -12.75631 -12.67048 -12.28306 -11.95495 -11.73990 -11.52115 -11.11733 -11.04345 -10.85416 -10.68931 -10.37401 -10.24133 -10.07056 -9.95155 -9.61795 -9.43240 -9.23972 -9.03111 -8.83783 -8.53491 -6.74095 -5.83316 -3.26802 1.52278 2.00670 2.15182 3.31222 3.34476 3.42399 3.44676 3.50628 3.91034 4.24264 4.29059 4.44136 4.44443 4.50875 4.54328 4.86771 4.95713 5.05566 5.16651 5.20923 5.23026 5.34399 5.39291 5.52715 5.54866 5.55630 5.56967 5.63339 5.84677 5.91760 6.08202 6.19102 6.25279 6.33036 6.40377 6.51890 6.56364 6.62234 6.78937 7.12803 7.53264 7.56761 7.72327 7.85843 7.89896 8.33758 8.35066 9.12410 9.75201 10.32227 11.24816 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.002384 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.568986 B =11742.715325 C =12302.813412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.179 4.179 7 C -0.014 4.014 8 C 0.601 3.399 9 O -0.539 6.539 10 N -0.707 5.707 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.259 5.259 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 26.622 -0.003 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.067 5.067 5 C -0.164 4.164 6 C -0.207 4.207 7 C -0.174 4.174 8 C 0.385 3.615 9 O -0.415 6.415 10 N -0.357 5.357 11 C 0.006 3.994 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.318 5.318 16 C -0.383 4.383 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.308 6.308 27 N -0.095 5.095 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.179 0.821 37 H 0.244 0.756 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.091 26.088 -0.416 27.317 hybrid contribution -0.608 -0.590 -0.061 0.849 sum -8.699 25.498 -0.477 26.946 Atomic orbital electron populations 1.22231 0.92804 1.03832 1.03469 1.21602 0.95562 0.93347 0.85518 1.22196 1.02607 0.93467 1.03978 1.45751 1.45374 1.05968 1.09578 1.22731 1.07208 1.00765 0.85649 1.21771 1.06632 0.91042 1.01298 1.21993 1.08313 0.96279 0.90859 1.16891 0.77653 0.81884 0.85064 1.90785 1.49330 1.83602 1.17775 1.45811 1.66124 1.09662 1.14125 1.21466 1.01038 0.80773 0.96100 1.22800 0.92784 0.95120 0.88754 0.92345 1.21447 0.99398 0.88700 0.90997 1.44078 1.55624 1.18172 1.13942 1.19245 1.02852 0.88378 1.27789 0.91283 1.25051 0.95403 0.97355 1.01938 1.70044 1.12208 1.33002 1.39462 0.86185 0.80061 0.82268 0.78033 1.20209 1.21515 1.21632 1.21450 0.93182 0.90929 0.93079 1.23314 1.00072 0.93908 0.86498 1.87799 1.60604 1.54006 1.28392 1.73531 1.15953 0.97830 1.22137 0.89983 0.91616 0.91233 0.87146 0.91231 0.91179 0.89588 0.80447 0.82118 0.75611 0.90454 0.89919 0.95147 0.91721 0.93565 0.95364 0.88782 0.90092 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.52 37.16 0.35 -0.42 16 2 C 0.14 0.81 3.80 -67.93 -0.26 0.55 16 3 C -0.16 -0.54 8.80 37.15 0.33 -0.21 16 4 N -0.28 -2.60 3.22 -54.83 -0.18 -2.78 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.18 -2.05 10.81 -39.36 -0.43 -2.48 16 7 C -0.01 -0.20 7.13 -82.76 -0.59 -0.79 16 8 C 0.60 9.72 7.83 -12.39 -0.10 9.63 16 9 O -0.54 -10.11 16.93 5.30 0.09 -10.02 16 10 N -0.71 -10.91 5.50 -61.29 -0.34 -11.25 16 11 C 0.13 2.11 5.34 -4.04 -0.02 2.09 16 12 C 0.07 1.19 2.81 -26.58 -0.07 1.12 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 14 C 0.12 2.59 6.02 -3.54 -0.02 2.57 16 15 N -0.59 -15.07 3.05 -171.82 -0.52 -15.59 16 16 C -0.25 -6.94 9.65 -15.06 -0.15 -7.09 16 17 H 0.07 1.85 7.88 -52.48 -0.41 1.44 16 18 C 0.00 0.03 4.95 -17.43 -0.09 -0.06 16 19 N -0.90 -26.15 11.14 55.49 0.62 -25.53 16 20 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.14 3.36 5.45 -3.53 -0.02 3.35 16 25 C 0.04 0.79 6.98 37.31 0.26 1.05 16 26 O -0.39 -7.61 10.33 -35.23 -0.36 -7.98 16 27 N -0.26 -3.28 11.67 33.42 0.39 -2.89 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.17 7.05 -51.93 -0.37 -0.20 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.18 0.82 7.16 -52.49 -0.38 0.45 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.41 6.00 8.20 -40.82 -0.33 5.67 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.09 2.48 6.14 -51.93 -0.32 2.16 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -33.87 378.97 -7.88 -41.75 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.28 Total: 3.11 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.98 Total: 8.95 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.03 Total: -58.05 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.87 -7.88 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035526701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.099 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds