Wall clock time and date at job start Tue Mar 31 2020 13:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47349 * 2 1 4 4 N 1.46502 * 109.47110 * 120.00311 * 2 1 3 5 5 C 1.35037 * 124.88298 * 274.72033 * 4 2 1 6 6 C 1.35363 * 107.23119 * 179.89360 * 5 4 2 7 7 C 1.41508 * 105.49768 * 0.34836 * 6 5 4 8 8 C 1.47713 * 126.51235 * 179.79628 * 7 6 5 9 9 O 1.21571 * 120.00477 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99868 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00173 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47240 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50900 * 305.00077 * 12 11 10 14 14 C 1.53293 * 109.51231 * 184.90433 * 12 11 10 15 15 N 1.47149 * 108.38552 * 187.77509 * 14 12 11 16 16 C 1.36935 * 120.98160 * 230.55747 * 15 14 12 17 17 H 1.08003 * 120.00350 * 26.23263 * 16 15 14 18 18 C 1.38813 * 119.99798 * 206.23127 * 16 15 14 19 19 N 1.31620 * 120.00397 * 16.92205 * 18 16 15 20 20 Si 1.86801 * 119.99949 * 196.91361 * 18 16 15 21 21 H 1.48500 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47024 * 120.00471 * 20 18 16 23 23 H 1.48500 * 109.47502 * 240.00125 * 20 18 16 24 24 C 1.47154 * 118.03756 * 50.52889 * 15 14 12 25 25 C 1.53297 * 108.38527 * 309.47254 * 24 15 14 26 26 O 1.42956 * 109.26584 * 52.27329 * 25 24 15 27 27 N 1.28467 * 124.88538 * 95.02245 * 4 2 1 28 28 H 1.09000 * 109.46767 * 60.00152 * 1 2 3 29 29 H 1.08998 * 109.46960 * 300.00167 * 1 2 3 30 30 H 1.09002 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47058 * 239.99642 * 2 1 3 32 32 H 1.08998 * 109.47226 * 59.99995 * 3 2 1 33 33 H 1.09001 * 109.47317 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47062 * 299.99668 * 3 2 1 35 35 H 1.08001 * 126.38363 * 359.97438 * 5 4 2 36 36 H 1.07996 * 127.24771 * 180.16270 * 6 5 4 37 37 H 0.96999 * 119.99645 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47280 * 300.00730 * 11 10 8 39 39 H 1.09008 * 109.46822 * 60.00373 * 11 10 8 40 40 H 1.09002 * 109.68301 * 307.49524 * 14 12 11 41 41 H 1.09004 * 109.68582 * 68.01002 * 14 12 11 42 42 H 0.96996 * 120.00790 * 180.02562 * 19 18 16 43 43 H 1.09009 * 109.67777 * 69.19144 * 24 15 14 44 44 H 1.08997 * 109.68362 * 189.70355 * 24 15 14 45 45 H 1.08997 * 109.50979 * 172.22487 * 25 24 15 46 46 H 1.08996 * 109.50776 * 292.37546 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1898 -0.1139 2.4050 6 6 2.6494 -1.0712 3.2445 7 6 2.7478 -2.2456 2.4611 8 6 3.2083 -3.5720 2.9198 9 8 3.5492 -3.7309 4.0759 10 7 3.2495 -4.6065 2.0569 11 6 3.7067 -5.9219 2.5116 12 6 3.6575 -6.9104 1.3447 13 1 2.6538 -6.9224 0.9199 14 6 4.0180 -8.3133 1.8466 15 7 4.1469 -9.2038 0.6822 16 6 3.4907 -10.4048 0.6373 17 1 2.5796 -10.5438 1.2004 18 6 3.9964 -11.4436 -0.1321 19 7 5.2457 -11.4093 -0.5447 20 14 2.9038 -12.8905 -0.5818 21 1 1.5523 -12.6899 0.0001 22 1 2.7963 -12.9892 -2.0596 23 1 3.4939 -14.1425 -0.0437 24 6 5.0014 -8.7653 -0.4327 25 6 4.5930 -7.3404 -0.8234 26 8 4.5957 -6.5126 0.3421 27 7 2.3502 -1.9308 1.2445 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.9952 0.9184 2.6558 36 1 2.8928 -0.9611 4.2909 37 1 2.9772 -4.4798 1.1346 38 1 4.7301 -5.8440 2.8785 39 1 3.0588 -6.2743 3.3143 40 1 4.9633 -8.2778 2.3880 41 1 3.2312 -8.6810 2.5054 42 1 5.5991 -12.1350 -1.0826 43 1 6.0458 -8.7754 -0.1206 44 1 4.8661 -9.4330 -1.2835 45 1 5.3011 -6.9456 -1.5520 46 1 3.5931 -7.3542 -1.2569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035526701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:33 Heat of formation + Delta-G solvation = -2.609821 kcal Electronic energy + Delta-G solvation = -27037.839177 eV Core-core repulsion = 23157.217076 eV Total energy + Delta-G solvation = -3880.622102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.66519 -40.73612 -39.88096 -36.72868 -36.52468 -35.80718 -33.40580 -32.53558 -31.87999 -31.18966 -29.24321 -28.21676 -27.34920 -25.23114 -24.80080 -23.64983 -22.96615 -21.76370 -21.24426 -20.69441 -19.00487 -18.73788 -17.74876 -17.56346 -17.17905 -16.94204 -16.81108 -16.17349 -15.89685 -15.58046 -15.46491 -15.29579 -15.05240 -14.70328 -14.64931 -14.50673 -13.97446 -13.93432 -13.62906 -13.25308 -13.22732 -13.05257 -13.02474 -12.72570 -12.52205 -12.34371 -12.18658 -12.12981 -12.06993 -11.90757 -11.87136 -11.43492 -11.24899 -10.82027 -10.56339 -10.35172 -10.13876 -9.95643 -8.77170 -7.92196 -5.39730 0.53344 1.21810 1.45570 1.47133 1.50242 1.58262 2.12519 2.36890 2.47645 2.76136 3.22772 3.32148 3.47105 3.74029 3.88605 3.94101 3.94935 4.04314 4.07811 4.19461 4.28043 4.45720 4.50628 4.59081 4.65707 4.67436 4.70075 4.73184 4.78464 4.79546 4.84426 4.87615 4.89470 5.04059 5.18787 5.22487 5.24186 5.29417 5.39631 5.53910 5.59984 5.92866 6.24038 6.31318 6.41112 6.92154 7.04816 7.13807 7.72601 8.26717 9.14230 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.002384 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.568986 B =11742.715325 C =12302.813412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.600 3.400 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.140 3.860 12 C 0.080 3.920 13 H 0.067 0.933 14 C 0.118 3.882 15 N -0.613 5.613 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.293 1.293 24 C 0.144 3.856 25 C 0.053 3.947 26 O -0.391 6.391 27 N -0.277 5.277 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.223 0.777 36 H 0.164 0.836 37 H 0.413 0.587 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.252 0.748 43 H 0.000 1.000 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 29.311 -0.660 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.060 5.060 5 C -0.141 4.141 6 C -0.229 4.229 7 C -0.205 4.205 8 C 0.386 3.614 9 O -0.451 6.451 10 N -0.352 5.352 11 C 0.016 3.984 12 C 0.020 3.980 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.338 5.338 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.220 1.220 24 C 0.018 3.982 25 C -0.024 4.024 26 O -0.311 6.311 27 N -0.115 5.115 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.239 0.761 36 H 0.182 0.818 37 H 0.249 0.751 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.038 0.962 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.087 0.913 45 H 0.126 0.874 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.012 28.802 -1.084 30.512 hybrid contribution -0.028 -1.331 0.133 1.338 sum -10.040 27.472 -0.951 29.264 Atomic orbital electron populations 1.22217 0.91732 1.02845 1.05034 1.22013 0.96371 0.94503 0.84013 1.22214 1.02021 0.91614 1.05831 1.46237 1.43671 1.05113 1.10940 1.23306 1.04508 1.01913 0.84421 1.21993 1.07913 0.91021 1.01998 1.21793 1.10648 0.95895 0.92186 1.17225 0.76895 0.82725 0.84572 1.90750 1.50973 1.84337 1.19084 1.45721 1.65943 1.09250 1.14328 1.21287 1.00832 0.80960 0.95355 1.22644 0.92723 0.93708 0.88923 0.91530 1.21590 0.99294 0.89851 0.90127 1.44355 1.55536 1.18409 1.15456 1.19590 1.03079 0.89250 1.27570 0.90918 1.25851 0.96564 1.00078 1.02184 1.70197 1.13849 1.33838 1.40327 0.85134 0.78700 0.78652 0.77492 1.18943 1.21382 1.21978 1.21310 0.91681 0.93228 0.91964 1.23168 1.01214 0.91092 0.86941 1.87813 1.61072 1.53619 1.28552 1.73462 1.16610 0.99717 1.21663 0.87551 0.90928 0.93457 0.87587 0.89735 0.92062 0.87428 0.76075 0.81812 0.75080 0.91502 0.88844 0.96186 0.90721 0.93905 0.98235 0.91286 0.87391 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.52 71.98 0.69 -0.38 16 2 C 0.13 1.16 3.80 44.99 0.17 1.33 16 3 C -0.16 -0.46 8.80 71.98 0.63 0.18 16 4 N -0.27 -4.51 3.22 -327.38 -1.05 -5.57 16 5 C 0.00 0.02 10.54 83.54 0.88 0.90 16 6 C -0.20 -4.40 10.81 22.41 0.24 -4.16 16 7 C -0.05 -1.30 7.13 42.46 0.30 -1.00 16 8 C 0.60 19.63 7.83 86.75 0.68 20.31 16 9 O -0.57 -21.94 16.93 -3.94 -0.07 -22.00 16 10 N -0.70 -21.59 5.50 -466.09 -2.56 -24.15 16 11 C 0.14 4.51 5.34 86.38 0.46 4.97 16 12 C 0.08 2.86 2.81 30.69 0.09 2.95 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.12 5.04 6.02 86.35 0.52 5.56 16 15 N -0.61 -31.48 3.05 -697.52 -2.13 -33.61 16 16 C -0.27 -14.63 9.65 84.03 0.81 -13.82 16 17 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 18 C -0.05 -2.87 4.95 84.86 0.42 -2.45 16 19 N -0.94 -55.54 11.14 21.65 0.24 -55.30 16 20 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.14 7.10 5.45 86.35 0.47 7.57 16 25 C 0.05 2.07 6.98 72.08 0.50 2.57 16 26 O -0.39 -15.02 10.33 -148.98 -1.54 -16.56 16 27 N -0.28 -6.81 11.67 -48.17 -0.56 -7.37 16 28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.08 0.02 7.05 -2.39 -0.02 0.00 16 33 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.22 1.03 7.16 -2.91 -0.02 1.00 16 36 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.41 11.95 8.20 -92.71 -0.76 11.19 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 2.99 7.96 -2.38 -0.02 2.98 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 44 H 0.07 3.74 6.14 -2.39 -0.01 3.73 16 45 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.14 378.97 1.44 -73.70 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.22 Total: 19.66 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 6.87 Total: 24.53 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -6.07 Total: -125.99 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.61 Total: -38.56 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -75.14 1.44 -73.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035526701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.087 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds