Wall clock time and date at job start Tue Mar 31 2020 13:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 N 1.46504 * 109.47378 * 120.00130 * 2 1 3 5 5 C 1.35036 * 124.88356 * 275.00408 * 4 2 1 6 6 C 1.35359 * 107.22492 * 180.02562 * 5 4 2 7 7 C 1.41496 * 105.50818 * 359.97438 * 6 5 4 8 8 C 1.47711 * 126.52344 * 180.02562 * 7 6 5 9 9 O 1.21572 * 119.99457 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00514 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38812 * 119.99878 * 153.49544 * 16 15 14 19 19 N 1.31622 * 120.00058 * 343.08256 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 162.80886 * 18 16 15 21 21 H 1.48497 * 109.46927 * 90.00263 * 20 18 16 22 22 H 1.48506 * 109.46836 * 209.99902 * 20 18 16 23 23 H 1.48490 * 109.47352 * 329.99799 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 N 1.28473 * 124.88178 * 95.33463 * 4 2 1 28 28 H 1.09003 * 109.46922 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47391 * 59.99762 * 1 2 3 30 30 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46922 * 240.00158 * 2 1 3 32 32 H 1.09010 * 109.47055 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47300 * 299.99868 * 3 2 1 34 34 H 1.09003 * 109.47120 * 60.00279 * 3 2 1 35 35 H 1.07994 * 126.38509 * 0.03128 * 5 4 2 36 36 H 1.08007 * 127.24512 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 39 39 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 40 40 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 41 41 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 42 42 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 44 44 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 45 45 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 46 46 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1847 -0.1152 2.4064 6 6 2.6490 -1.0713 3.2445 7 6 2.7474 -2.2456 2.4613 8 6 3.2076 -3.5722 2.9198 9 8 3.5485 -3.7310 4.0759 10 7 3.2487 -4.6067 2.0570 11 6 3.7058 -5.9222 2.5117 12 6 3.6564 -6.9106 1.3448 13 1 4.3058 -6.5597 0.5428 14 6 4.1273 -8.2932 1.8239 15 7 3.8961 -9.2583 0.7373 16 6 4.8931 -10.0969 0.3156 17 1 5.9273 -9.8099 0.4360 18 6 4.5744 -11.3160 -0.2668 19 7 3.3673 -11.8198 -0.1205 20 14 5.8566 -12.2380 -1.2646 21 1 6.6200 -13.1460 -0.3714 22 1 5.1826 -13.0345 -2.3213 23 1 6.7863 -11.2664 -1.8944 24 6 2.5603 -9.2998 0.1217 25 6 2.1641 -7.8719 -0.2708 26 8 2.3146 -7.0134 0.8625 27 7 2.3557 -1.9294 1.2431 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.9846 0.9157 2.6585 36 1 2.8924 -0.9613 4.2910 37 1 2.9764 -4.4800 1.1346 38 1 3.0578 -6.2744 3.3143 39 1 4.7292 -5.8444 2.8786 40 1 3.5613 -8.5915 2.7064 41 1 5.1901 -8.2578 2.0634 42 1 3.1448 -12.6719 -0.5271 43 1 2.5848 -9.9312 -0.7664 44 1 1.8393 -9.6982 0.8355 45 1 2.8082 -7.5245 -1.0787 46 1 1.1259 -7.8601 -0.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035526702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:37 Heat of formation + Delta-G solvation = 21.513152 kcal Electronic energy + Delta-G solvation = -27057.079911 eV Core-core repulsion = 23177.503860 eV Total energy + Delta-G solvation = -3879.576051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.85875 -39.36894 -38.30077 -36.19566 -34.82823 -34.21203 -31.63182 -31.10375 -30.93966 -30.12525 -27.92491 -27.50373 -25.73686 -24.02467 -23.14861 -22.65040 -21.56143 -20.61849 -20.07194 -19.45289 -18.00236 -17.02960 -16.75334 -16.24082 -15.97033 -15.69307 -15.03816 -14.92221 -14.61818 -14.36668 -14.18882 -13.98165 -13.74543 -13.50086 -13.37547 -13.12529 -13.00076 -12.84532 -12.71981 -12.66686 -12.27430 -11.94694 -11.73227 -11.51196 -11.11247 -11.03649 -10.83024 -10.68658 -10.37336 -10.27873 -10.06826 -9.94830 -9.61604 -9.42590 -9.23432 -9.03109 -8.82421 -8.52707 -6.73541 -5.83259 -3.26617 1.52953 2.01217 2.15801 3.31739 3.35189 3.41940 3.44294 3.51362 3.91539 4.24990 4.29096 4.44384 4.44831 4.51460 4.55552 4.87412 4.96685 5.06257 5.17884 5.21704 5.23570 5.34526 5.39537 5.52841 5.55214 5.56838 5.57276 5.63799 5.84243 5.91940 6.08741 6.19483 6.25867 6.33770 6.40652 6.52235 6.56975 6.62719 6.79064 7.12896 7.53419 7.57848 7.72073 7.86810 7.89820 8.34284 8.35893 9.12579 9.75412 10.32600 11.24845 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002386 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.558285 B =11730.815158 C =12342.410148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.278 5.278 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.014 4.014 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.706 5.706 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.259 5.259 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.040 0.960 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 27.240 -0.720 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.222 4.222 4 N -0.067 5.067 5 C -0.164 4.164 6 C -0.208 4.208 7 C -0.174 4.174 8 C 0.385 3.615 9 O -0.416 6.416 10 N -0.356 5.356 11 C 0.006 3.994 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.308 6.308 27 N -0.094 5.094 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.195 0.805 36 H 0.179 0.821 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.486 26.619 -1.059 27.199 hybrid contribution 0.680 -0.319 -0.332 0.821 sum -4.806 26.300 -1.391 26.772 Atomic orbital electron populations 1.22232 0.92772 1.03907 1.03461 1.21599 0.95604 0.93307 0.85502 1.22198 1.02552 0.93499 1.03984 1.45755 1.45318 1.06090 1.09517 1.22726 1.07150 1.00801 0.85679 1.21768 1.06634 0.91034 1.01319 1.21992 1.08368 0.96227 0.90847 1.16894 0.77664 0.81919 0.85047 1.90784 1.49395 1.83705 1.17674 1.45785 1.66149 1.09419 1.14272 1.21479 1.00500 0.80447 0.96936 1.22896 0.85171 0.96356 0.95074 0.92305 1.21536 0.99234 0.88114 0.91656 1.44085 1.10086 1.40699 1.36922 1.19189 0.87536 0.96290 1.35356 0.91352 1.25055 0.96916 0.95983 1.01760 1.70036 1.19883 1.18796 1.46016 0.86260 0.80789 0.79578 0.79929 1.21292 1.21500 1.20457 1.21441 0.86069 0.91816 0.99290 1.23312 1.00049 0.93194 0.87209 1.87789 1.26777 1.67584 1.48659 1.73540 1.15901 0.97787 1.22198 0.91607 0.89991 0.91165 0.87166 0.91222 0.89598 0.91226 0.80455 0.82125 0.75524 0.90518 0.89988 0.95127 0.91721 0.93514 0.88808 0.95382 0.94128 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.52 37.16 0.35 -0.45 16 2 C 0.14 0.81 3.80 -67.93 -0.26 0.55 16 3 C -0.16 -0.53 8.80 37.16 0.33 -0.21 16 4 N -0.28 -2.62 3.22 -54.83 -0.18 -2.79 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.18 -2.06 10.81 -39.37 -0.43 -2.49 16 7 C -0.01 -0.20 7.13 -82.77 -0.59 -0.79 16 8 C 0.60 9.76 7.82 -12.39 -0.10 9.66 16 9 O -0.54 -10.14 16.93 5.30 0.09 -10.05 16 10 N -0.71 -10.96 5.45 -61.29 -0.33 -11.29 16 11 C 0.13 2.11 5.37 -4.04 -0.02 2.09 16 12 C 0.06 1.19 2.88 -26.36 -0.08 1.11 16 13 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.12 2.59 6.05 -3.31 -0.02 2.57 16 15 N -0.59 -15.07 3.04 -171.57 -0.52 -15.59 16 16 C -0.25 -6.97 9.65 -15.06 -0.15 -7.12 16 17 H 0.07 1.82 7.89 -52.48 -0.41 1.41 16 18 C 0.00 0.04 4.95 -17.43 -0.09 -0.05 16 19 N -0.90 -26.15 11.14 55.49 0.62 -25.54 16 20 Si 0.91 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.14 3.37 5.44 -3.53 -0.02 3.35 16 25 C 0.04 0.79 6.99 37.31 0.26 1.05 16 26 O -0.39 -7.59 10.13 -35.23 -0.36 -7.95 16 27 N -0.26 -3.30 11.67 33.42 0.39 -2.91 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.17 7.06 -51.93 -0.37 -0.20 16 35 H 0.18 0.83 7.16 -52.49 -0.38 0.45 16 36 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.41 6.08 8.07 -40.82 -0.33 5.75 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 2.47 6.14 -51.93 -0.32 2.15 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -33.83 378.72 -7.86 -41.69 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.27 Total: 3.25 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.98 Total: 8.93 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.02 Total: -58.11 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.83 -7.86 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035526702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.207 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds