Wall clock time and date at job start Tue Mar 31 2020 13:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 N 1.46504 * 109.47378 * 120.00130 * 2 1 3 5 5 C 1.35036 * 124.88356 * 275.00408 * 4 2 1 6 6 C 1.35359 * 107.22492 * 180.02562 * 5 4 2 7 7 C 1.41496 * 105.50818 * 359.97438 * 6 5 4 8 8 C 1.47711 * 126.52344 * 180.02562 * 7 6 5 9 9 O 1.21572 * 119.99457 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00514 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38812 * 119.99878 * 153.49544 * 16 15 14 19 19 N 1.31622 * 120.00058 * 343.08256 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 162.80886 * 18 16 15 21 21 H 1.48497 * 109.46927 * 90.00263 * 20 18 16 22 22 H 1.48506 * 109.46836 * 209.99902 * 20 18 16 23 23 H 1.48490 * 109.47352 * 329.99799 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 N 1.28473 * 124.88178 * 95.33463 * 4 2 1 28 28 H 1.09003 * 109.46922 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47391 * 59.99762 * 1 2 3 30 30 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46922 * 240.00158 * 2 1 3 32 32 H 1.09010 * 109.47055 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47300 * 299.99868 * 3 2 1 34 34 H 1.09003 * 109.47120 * 60.00279 * 3 2 1 35 35 H 1.07994 * 126.38509 * 0.03128 * 5 4 2 36 36 H 1.08007 * 127.24512 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 39 39 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 40 40 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 41 41 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 42 42 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 44 44 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 45 45 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 46 46 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1847 -0.1152 2.4064 6 6 2.6490 -1.0713 3.2445 7 6 2.7474 -2.2456 2.4613 8 6 3.2076 -3.5722 2.9198 9 8 3.5485 -3.7310 4.0759 10 7 3.2487 -4.6067 2.0570 11 6 3.7058 -5.9222 2.5117 12 6 3.6564 -6.9106 1.3448 13 1 4.3058 -6.5597 0.5428 14 6 4.1273 -8.2932 1.8239 15 7 3.8961 -9.2583 0.7373 16 6 4.8931 -10.0969 0.3156 17 1 5.9273 -9.8099 0.4360 18 6 4.5744 -11.3160 -0.2668 19 7 3.3673 -11.8198 -0.1205 20 14 5.8566 -12.2380 -1.2646 21 1 6.6200 -13.1460 -0.3714 22 1 5.1826 -13.0345 -2.3213 23 1 6.7863 -11.2664 -1.8944 24 6 2.5603 -9.2998 0.1217 25 6 2.1641 -7.8719 -0.2708 26 8 2.3146 -7.0134 0.8625 27 7 2.3557 -1.9294 1.2431 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.9846 0.9157 2.6585 36 1 2.8924 -0.9613 4.2910 37 1 2.9764 -4.4800 1.1346 38 1 3.0578 -6.2744 3.3143 39 1 4.7292 -5.8444 2.8786 40 1 3.5613 -8.5915 2.7064 41 1 5.1901 -8.2578 2.0634 42 1 3.1448 -12.6719 -0.5271 43 1 2.5848 -9.9312 -0.7664 44 1 1.8393 -9.6982 0.8355 45 1 2.8082 -7.5245 -1.0787 46 1 1.1259 -7.8601 -0.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035526702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:36 Heat of formation + Delta-G solvation = -2.346807 kcal Electronic energy + Delta-G solvation = -27058.114556 eV Core-core repulsion = 23177.503860 eV Total energy + Delta-G solvation = -3880.610697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.66274 -40.72847 -39.86771 -36.72696 -36.52510 -35.78750 -33.39724 -32.52507 -31.87754 -31.18371 -29.24300 -28.21521 -27.34281 -25.23106 -24.79029 -23.64626 -22.95597 -21.74355 -21.24974 -20.70081 -19.00512 -18.73222 -17.75780 -17.54619 -17.13699 -16.96068 -16.82083 -16.18220 -15.79749 -15.66928 -15.49536 -15.25261 -15.05014 -14.73110 -14.61986 -14.50044 -13.97478 -13.92900 -13.63247 -13.24836 -13.22274 -13.04790 -13.01598 -12.69381 -12.51393 -12.34140 -12.20512 -12.13113 -12.09472 -11.90694 -11.86980 -11.44164 -11.23826 -10.81625 -10.55301 -10.34645 -10.13467 -9.95261 -8.76593 -7.92102 -5.39548 0.53615 1.21961 1.46255 1.47364 1.50505 1.57637 2.12527 2.37220 2.48082 2.76748 3.23069 3.32596 3.47777 3.74396 3.88795 3.94304 3.95347 4.03789 4.07903 4.19218 4.28093 4.45860 4.50153 4.60241 4.65821 4.67594 4.70627 4.73973 4.78586 4.79708 4.84588 4.87925 4.89568 5.04211 5.18946 5.22417 5.24367 5.29871 5.39811 5.54015 5.59930 5.93097 6.23987 6.31558 6.41893 6.92523 7.04978 7.14256 7.72859 8.27089 9.14142 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002386 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.558285 B =11730.815158 C =12342.410148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.599 3.401 9 O -0.573 6.573 10 N -0.701 5.701 11 C 0.140 3.860 12 C 0.079 3.921 13 H 0.067 0.933 14 C 0.118 3.882 15 N -0.613 5.613 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.144 3.856 25 C 0.054 3.946 26 O -0.391 6.391 27 N -0.277 5.277 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.164 0.836 37 H 0.414 0.586 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.252 0.748 43 H 0.069 0.931 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 30.364 -1.830 30.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.060 5.060 5 C -0.141 4.141 6 C -0.229 4.229 7 C -0.205 4.205 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.352 5.352 11 C 0.015 3.985 12 C 0.020 3.980 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.193 1.193 24 C 0.018 3.982 25 C -0.024 4.024 26 O -0.310 6.310 27 N -0.114 5.114 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.239 0.761 36 H 0.182 0.818 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.038 0.962 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.426 29.773 -2.181 30.342 hybrid contribution 0.612 -1.203 0.013 1.350 sum -4.814 28.570 -2.168 29.053 Atomic orbital electron populations 1.22221 0.91853 1.02798 1.05035 1.22011 0.96291 0.94540 0.84031 1.22214 1.02051 0.91557 1.05811 1.46240 1.43610 1.05229 1.10891 1.23303 1.04446 1.01944 0.84450 1.21990 1.07920 0.91003 1.02019 1.21794 1.10702 0.95851 0.92177 1.17228 0.76908 0.82765 0.84551 1.90749 1.51030 1.84446 1.18962 1.45700 1.66039 1.08989 1.14441 1.21308 1.01022 0.80498 0.95625 1.22738 0.84648 0.94897 0.95735 0.91497 1.21678 0.99904 0.88869 0.90410 1.44364 1.10023 1.41160 1.38182 1.19552 0.88296 0.96696 1.35131 0.90929 1.25859 0.98885 0.96977 1.02929 1.70194 1.21801 1.19100 1.47101 0.85203 0.78390 0.78220 0.78168 1.21147 1.21696 1.19318 1.21304 0.85256 0.94237 0.97370 1.23165 1.01810 0.90106 0.87295 1.87804 1.27503 1.67061 1.48659 1.73470 1.16571 0.99675 1.21731 0.90952 0.87518 0.93568 0.87524 0.91969 0.87442 0.89777 0.76073 0.81812 0.75041 0.91566 0.88823 0.96210 0.90719 0.93898 0.91305 0.98275 0.93181 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.52 71.98 0.69 -0.46 16 2 C 0.13 1.17 3.80 44.99 0.17 1.34 16 3 C -0.16 -0.43 8.80 71.98 0.63 0.20 16 4 N -0.27 -4.54 3.22 -327.39 -1.05 -5.60 16 5 C 0.00 0.02 10.54 83.53 0.88 0.90 16 6 C -0.20 -4.42 10.81 22.41 0.24 -4.18 16 7 C -0.05 -1.31 7.13 42.46 0.30 -1.01 16 8 C 0.60 19.70 7.82 86.75 0.68 20.38 16 9 O -0.57 -21.99 16.93 -3.94 -0.07 -22.06 16 10 N -0.70 -21.69 5.45 -466.10 -2.54 -24.22 16 11 C 0.14 4.50 5.37 86.38 0.46 4.97 16 12 C 0.08 2.85 2.88 30.84 0.09 2.94 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.12 5.04 6.05 86.50 0.52 5.56 16 15 N -0.61 -31.48 3.04 -696.73 -2.12 -33.60 16 16 C -0.27 -14.74 9.65 84.03 0.81 -13.93 16 17 H 0.07 3.86 7.89 -2.91 -0.02 3.83 16 18 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 19 N -0.94 -55.54 11.14 21.65 0.24 -55.30 16 20 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.14 7.11 5.44 86.35 0.47 7.58 16 25 C 0.05 2.08 6.99 72.08 0.50 2.59 16 26 O -0.39 -14.97 10.13 -148.98 -1.51 -16.48 16 27 N -0.28 -6.85 11.67 -48.18 -0.56 -7.41 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.08 0.01 7.06 -2.39 -0.02 0.00 16 35 H 0.22 1.04 7.16 -2.91 -0.02 1.02 16 36 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.41 12.10 8.07 -92.71 -0.75 11.35 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 3.00 7.96 -2.39 -0.02 2.98 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.07 3.73 6.14 -2.39 -0.01 3.71 16 44 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -75.11 378.72 1.53 -73.59 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.23 Total: 19.99 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 6.87 Total: 24.44 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.03 Total: -126.13 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.58 Total: -38.53 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.11 1.53 -73.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035526702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.242 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds