Wall clock time and date at job start Tue Mar 31 2020 13:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 N 1.46503 * 109.47200 * 119.99789 * 2 1 3 5 5 C 1.34261 * 125.75494 * 275.27111 * 4 2 1 6 6 C 1.38047 * 107.41378 * 180.14332 * 5 4 2 7 7 C 1.47430 * 126.40936 * 179.87530 * 6 5 4 8 8 O 1.21595 * 120.00383 * 359.70346 * 7 6 5 9 9 N 1.34783 * 119.99704 * 179.71272 * 7 6 5 10 10 C 1.46501 * 119.99965 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.51228 * 304.90238 * 11 10 9 13 13 C 1.52874 * 109.62721 * 184.90811 * 11 10 9 14 14 N 1.47146 * 108.61038 * 187.90024 * 13 11 10 15 15 C 1.36938 * 120.98166 * 230.49961 * 14 13 11 16 16 H 1.08000 * 120.00437 * 26.46046 * 15 14 13 17 17 C 1.38817 * 120.00106 * 206.45559 * 15 14 13 18 18 N 1.31620 * 119.99788 * 16.42248 * 17 15 14 19 19 Si 1.86802 * 119.99867 * 196.14101 * 17 15 14 20 20 H 1.48493 * 109.47220 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46793 * 120.00703 * 19 17 15 22 22 H 1.48501 * 109.47003 * 240.00077 * 19 17 15 23 23 C 1.47152 * 118.03553 * 50.22601 * 14 13 11 24 24 C 1.53291 * 108.38463 * 309.71610 * 23 14 13 25 25 O 1.42958 * 109.22268 * 52.30270 * 24 23 14 26 26 C 1.41290 * 107.17401 * 359.60555 * 6 5 4 27 27 N 1.30454 * 108.02045 * 0.24302 * 26 6 5 28 28 H 1.08997 * 109.47226 * 299.99915 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00021 * 1 2 3 30 30 H 1.09006 * 109.47347 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47448 * 239.99596 * 2 1 3 32 32 H 1.08992 * 109.47914 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46896 * 300.00194 * 3 2 1 34 34 H 1.09007 * 109.46847 * 59.99322 * 3 2 1 35 35 H 1.07993 * 126.29297 * 359.97438 * 5 4 2 36 36 H 0.97002 * 119.99921 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46907 * 59.99826 * 10 9 7 38 38 H 1.08995 * 109.47254 * 300.00014 * 10 9 7 39 39 H 1.09004 * 109.61801 * 68.08073 * 13 11 10 40 40 H 1.09002 * 109.52448 * 307.66775 * 13 11 10 41 41 H 0.96997 * 119.99644 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.68009 * 69.44637 * 23 14 13 43 43 H 1.08998 * 109.67837 * 189.95158 * 23 14 13 44 44 H 1.09002 * 109.50962 * 172.22809 * 24 23 14 45 45 H 1.08996 * 109.51452 * 292.32644 * 24 23 14 46 46 H 1.07997 * 125.98929 * 180.20406 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1855 -0.1374 2.4081 6 6 2.6630 -1.1222 3.2494 7 6 2.9942 -0.9681 4.6778 8 8 2.8577 0.1114 5.2205 9 7 3.4484 -2.0238 5.3819 10 6 3.7780 -1.8705 6.8011 11 6 4.2661 -3.2090 7.3588 12 1 3.5167 -3.9774 7.1690 13 6 4.4947 -3.0850 8.8652 14 7 5.1405 -4.3169 9.3452 15 6 4.6435 -4.9994 10.4233 16 1 3.5950 -4.9270 10.6717 17 6 5.4873 -5.7845 11.1970 18 7 6.7917 -5.6311 11.1106 19 14 4.7713 -7.0532 12.3663 20 1 3.2891 -7.0245 12.2806 21 1 5.2623 -8.4038 11.9922 22 1 5.1936 -6.7402 13.7551 23 6 6.3327 -4.7973 8.6286 24 6 6.0113 -4.8409 7.1304 25 8 5.4939 -3.5721 6.7228 26 6 2.7689 -2.3070 2.4870 27 7 2.3837 -2.0394 1.2697 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.9859 0.8898 2.6750 36 1 3.5570 -2.8850 4.9490 37 1 2.8906 -1.5514 7.3478 38 1 4.5625 -1.1221 6.9132 39 1 3.5384 -2.9509 9.3707 40 1 5.1400 -2.2298 9.0665 41 1 7.3813 -6.1795 11.6515 42 1 7.1661 -4.1176 8.8057 43 1 6.5932 -5.7963 8.9780 44 1 6.9197 -5.0609 6.5695 45 1 5.2690 -5.6159 6.9396 46 1 3.1097 -3.2660 2.8484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035578349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:40 Heat of formation + Delta-G solvation = 15.947657 kcal Electronic energy + Delta-G solvation = -26864.136039 eV Core-core repulsion = 22984.318649 eV Total energy + Delta-G solvation = -3879.817389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65182 -39.28019 -38.30074 -36.18385 -34.82310 -34.22970 -31.65910 -30.91672 -30.71036 -30.02147 -27.91708 -27.48417 -25.67044 -23.75589 -23.13916 -22.44573 -21.68547 -20.34444 -20.19138 -19.54461 -18.09308 -16.90608 -16.11120 -15.99875 -15.84046 -15.68581 -15.28966 -14.96367 -14.63797 -14.50795 -14.30837 -13.98308 -13.70958 -13.40433 -13.24986 -13.12320 -13.02376 -12.76263 -12.72717 -12.69138 -12.27052 -11.95569 -11.78915 -11.53815 -11.22983 -11.11824 -10.86409 -10.69631 -10.38120 -10.24689 -9.98654 -9.83798 -9.83062 -9.62121 -9.05474 -9.03513 -8.71494 -8.54994 -6.74834 -5.84376 -3.28327 1.37209 1.99686 2.03199 3.33590 3.37709 3.42109 3.44070 3.52246 3.95375 4.26777 4.27962 4.43279 4.44941 4.47152 4.55689 4.89242 4.94401 5.02442 5.10157 5.17239 5.18847 5.26663 5.33351 5.49854 5.50265 5.53630 5.55478 5.60293 5.84571 5.91991 6.06950 6.17361 6.21204 6.31829 6.38734 6.50341 6.57848 6.62958 6.77631 7.11430 7.31473 7.52498 7.70392 7.71687 7.87554 8.33523 8.40569 9.11487 9.74116 10.31108 11.23818 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.002120 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.144012 B =13202.158796 C =13277.846376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.127 3.873 6 C -0.290 4.290 7 C 0.592 3.408 8 O -0.557 6.557 9 N -0.716 5.716 10 C 0.133 3.867 11 C 0.065 3.935 12 H 0.058 0.942 13 C 0.121 3.879 14 N -0.594 5.594 15 C -0.254 4.254 16 H 0.069 0.931 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.139 3.861 24 C 0.039 3.961 25 O -0.389 6.389 26 C 0.082 3.918 27 N -0.299 5.299 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.185 0.815 36 H 0.401 0.599 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.254 0.746 42 H 0.028 0.972 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 10.127 -23.006 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.137 5.137 5 C -0.024 4.024 6 C -0.304 4.304 7 C 0.380 3.620 8 O -0.436 6.436 9 N -0.366 5.366 10 C 0.009 3.991 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.308 6.308 26 C -0.106 4.106 27 N -0.118 5.118 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.202 0.798 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.210 10.506 -23.925 28.054 hybrid contribution -0.096 -1.040 1.502 1.829 sum -10.307 9.467 -22.423 26.432 Atomic orbital electron populations 1.22259 0.93225 1.03562 1.03401 1.21397 0.95101 0.92929 0.85567 1.22248 1.02628 0.93728 1.04054 1.48772 1.48918 1.07596 1.08416 1.22846 0.95504 0.99577 0.84521 1.20301 1.19456 0.94719 0.95972 1.17213 0.76448 0.83804 0.84559 1.90756 1.55034 1.26430 1.71415 1.45702 1.66701 1.12784 1.11424 1.21391 1.00412 0.97236 0.80046 1.22722 0.86861 0.94581 0.95323 0.92384 1.21362 0.97780 0.90656 0.90788 1.44052 1.31282 1.23690 1.32772 1.19238 0.92455 1.22809 1.03806 0.91308 1.25063 0.95331 1.01478 0.97860 1.70042 1.01744 1.40464 1.42448 0.86180 0.78546 0.81339 0.80454 1.20203 1.21506 1.21633 1.21441 0.88784 1.01563 0.86866 1.23316 0.97506 0.84150 0.98862 1.87798 1.39070 1.38064 1.65884 1.24106 0.97153 0.98961 0.90335 1.77171 1.21165 0.92787 1.20667 0.91638 0.90194 0.91427 0.87561 0.91200 0.89646 0.91188 0.79833 0.76441 0.90134 0.90648 0.91771 0.95227 0.93557 0.95353 0.88831 0.90067 0.94109 0.79312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 9.52 37.15 0.35 -0.43 16 2 C 0.15 0.87 3.91 -67.93 -0.27 0.61 16 3 C -0.17 -0.67 8.83 37.16 0.33 -0.34 16 4 N -0.36 -3.33 3.49 -54.32 -0.19 -3.52 16 5 C 0.13 1.29 10.39 -16.56 -0.17 1.12 16 6 C -0.29 -3.48 6.13 -105.06 -0.64 -4.12 16 7 C 0.59 8.58 7.81 -12.51 -0.10 8.49 16 8 O -0.56 -9.81 16.90 5.28 0.09 -9.72 16 9 N -0.72 -9.76 5.50 -61.39 -0.34 -10.09 16 10 C 0.13 2.03 5.35 -4.04 -0.02 2.01 16 11 C 0.07 1.13 2.80 -26.80 -0.07 1.05 16 12 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.12 2.52 6.00 -3.75 -0.02 2.50 16 14 N -0.59 -14.80 3.05 -172.09 -0.53 -15.33 16 15 C -0.25 -6.87 9.65 -15.06 -0.15 -7.02 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 17 C 0.00 0.04 4.95 -17.43 -0.09 -0.05 16 18 N -0.90 -25.94 11.15 55.49 0.62 -25.32 16 19 Si 0.91 21.39 29.58 -169.99 -5.03 16.36 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 C 0.14 3.30 5.44 -3.54 -0.02 3.28 16 24 C 0.04 0.75 6.98 37.31 0.26 1.01 16 25 O -0.39 -7.23 10.33 -35.23 -0.36 -7.59 16 26 C 0.08 0.88 11.50 -16.98 -0.20 0.69 16 27 N -0.30 -3.37 12.50 30.86 0.39 -2.98 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.27 7.13 -51.92 -0.37 -0.10 16 35 H 0.18 1.51 7.24 -52.49 -0.38 1.13 16 36 H 0.40 4.72 7.43 -40.82 -0.30 4.42 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.19 1.54 7.50 -52.49 -0.39 1.14 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -33.84 378.54 -7.67 -41.52 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.22 Total: 2.18 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.80 Total: 8.79 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.05 Total: -57.24 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.27 Total: -17.31 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.84 -7.67 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035578349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.465 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds