Wall clock time and date at job start Tue Mar 31 2020 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 N 1.46503 * 109.47200 * 119.99789 * 2 1 3 5 5 C 1.34261 * 125.75494 * 275.27111 * 4 2 1 6 6 C 1.38047 * 107.41378 * 180.14332 * 5 4 2 7 7 C 1.47430 * 126.40936 * 179.87530 * 6 5 4 8 8 O 1.21595 * 120.00383 * 359.70346 * 7 6 5 9 9 N 1.34783 * 119.99704 * 179.71272 * 7 6 5 10 10 C 1.46501 * 119.99965 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.51228 * 304.90238 * 11 10 9 13 13 C 1.52874 * 109.62721 * 184.90811 * 11 10 9 14 14 N 1.47146 * 108.61038 * 187.90024 * 13 11 10 15 15 C 1.36938 * 120.98166 * 230.49961 * 14 13 11 16 16 H 1.08000 * 120.00437 * 26.46046 * 15 14 13 17 17 C 1.38817 * 120.00106 * 206.45559 * 15 14 13 18 18 N 1.31620 * 119.99788 * 16.42248 * 17 15 14 19 19 Si 1.86802 * 119.99867 * 196.14101 * 17 15 14 20 20 H 1.48493 * 109.47220 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46793 * 120.00703 * 19 17 15 22 22 H 1.48501 * 109.47003 * 240.00077 * 19 17 15 23 23 C 1.47152 * 118.03553 * 50.22601 * 14 13 11 24 24 C 1.53291 * 108.38463 * 309.71610 * 23 14 13 25 25 O 1.42958 * 109.22268 * 52.30270 * 24 23 14 26 26 C 1.41290 * 107.17401 * 359.60555 * 6 5 4 27 27 N 1.30454 * 108.02045 * 0.24302 * 26 6 5 28 28 H 1.08997 * 109.47226 * 299.99915 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00021 * 1 2 3 30 30 H 1.09006 * 109.47347 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47448 * 239.99596 * 2 1 3 32 32 H 1.08992 * 109.47914 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46896 * 300.00194 * 3 2 1 34 34 H 1.09007 * 109.46847 * 59.99322 * 3 2 1 35 35 H 1.07993 * 126.29297 * 359.97438 * 5 4 2 36 36 H 0.97002 * 119.99921 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46907 * 59.99826 * 10 9 7 38 38 H 1.08995 * 109.47254 * 300.00014 * 10 9 7 39 39 H 1.09004 * 109.61801 * 68.08073 * 13 11 10 40 40 H 1.09002 * 109.52448 * 307.66775 * 13 11 10 41 41 H 0.96997 * 119.99644 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.68009 * 69.44637 * 23 14 13 43 43 H 1.08998 * 109.67837 * 189.95158 * 23 14 13 44 44 H 1.09002 * 109.50962 * 172.22809 * 24 23 14 45 45 H 1.08996 * 109.51452 * 292.32644 * 24 23 14 46 46 H 1.07997 * 125.98929 * 180.20406 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1855 -0.1374 2.4081 6 6 2.6630 -1.1222 3.2494 7 6 2.9942 -0.9681 4.6778 8 8 2.8577 0.1114 5.2205 9 7 3.4484 -2.0238 5.3819 10 6 3.7780 -1.8705 6.8011 11 6 4.2661 -3.2090 7.3588 12 1 3.5167 -3.9774 7.1690 13 6 4.4947 -3.0850 8.8652 14 7 5.1405 -4.3169 9.3452 15 6 4.6435 -4.9994 10.4233 16 1 3.5950 -4.9270 10.6717 17 6 5.4873 -5.7845 11.1970 18 7 6.7917 -5.6311 11.1106 19 14 4.7713 -7.0532 12.3663 20 1 3.2891 -7.0245 12.2806 21 1 5.2623 -8.4038 11.9922 22 1 5.1936 -6.7402 13.7551 23 6 6.3327 -4.7973 8.6286 24 6 6.0113 -4.8409 7.1304 25 8 5.4939 -3.5721 6.7228 26 6 2.7689 -2.3070 2.4870 27 7 2.3837 -2.0394 1.2697 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.9859 0.8898 2.6750 36 1 3.5570 -2.8850 4.9490 37 1 2.8906 -1.5514 7.3478 38 1 4.5625 -1.1221 6.9132 39 1 3.5384 -2.9509 9.3707 40 1 5.1400 -2.2298 9.0665 41 1 7.3813 -6.1795 11.6515 42 1 7.1661 -4.1176 8.8057 43 1 6.5932 -5.7963 8.9780 44 1 6.9197 -5.0609 6.5695 45 1 5.2690 -5.6159 6.9396 46 1 3.1097 -3.2660 2.8484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035578349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:39 Heat of formation + Delta-G solvation = -7.742073 kcal Electronic energy + Delta-G solvation = -26865.163302 eV Core-core repulsion = 22984.318649 eV Total energy + Delta-G solvation = -3880.844653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.43948 -40.56154 -39.73880 -36.71831 -36.47265 -35.69876 -33.37488 -32.48472 -31.46304 -31.02511 -29.16945 -28.24757 -27.22257 -25.07595 -24.55791 -23.37101 -23.03480 -21.63145 -20.93923 -20.87092 -19.06543 -18.76122 -17.50513 -17.08129 -16.97901 -16.70000 -16.48659 -16.13391 -15.96890 -15.61168 -15.47348 -15.31879 -14.99424 -14.94647 -14.57226 -14.31403 -13.93440 -13.85989 -13.55606 -13.20137 -13.19431 -13.08983 -12.99492 -12.70637 -12.49488 -12.39325 -12.32621 -12.14955 -12.03602 -11.94502 -11.85037 -11.30924 -10.94028 -10.77645 -10.58346 -10.53546 -10.14870 -9.63304 -8.74069 -7.90436 -5.38126 0.54148 1.16755 1.34975 1.46661 1.48455 1.59209 2.27279 2.48980 2.50005 2.81603 3.24730 3.41858 3.51231 3.76131 3.85032 3.91190 4.02521 4.06139 4.09734 4.14021 4.29661 4.36206 4.50293 4.56437 4.62184 4.64759 4.69042 4.72757 4.74872 4.79342 4.85356 4.88657 4.93046 5.09535 5.15777 5.20338 5.26584 5.39938 5.48221 5.57147 5.62626 5.90419 6.27773 6.35206 6.50745 6.66984 7.07167 7.31052 7.75211 8.28943 9.15824 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.002120 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.144012 B =13202.158796 C =13277.846376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.314 4.314 7 C 0.594 3.406 8 O -0.594 6.594 9 N -0.709 5.709 10 C 0.144 3.856 11 C 0.080 3.920 12 H 0.070 0.930 13 C 0.116 3.884 14 N -0.613 5.613 15 C -0.263 4.263 16 H 0.073 0.927 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.294 1.294 23 C 0.142 3.858 24 C 0.054 3.946 25 O -0.389 6.389 26 C 0.085 3.915 27 N -0.322 5.322 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.412 0.588 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.251 0.749 42 H -0.002 1.002 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 10.260 -24.963 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.329 4.329 7 C 0.383 3.617 8 O -0.476 6.476 9 N -0.359 5.359 10 C 0.019 3.981 11 C 0.020 3.980 12 H 0.088 0.912 13 C -0.010 4.010 14 N -0.337 5.337 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.221 1.221 23 C 0.017 3.983 24 C -0.024 4.024 25 O -0.308 6.308 26 C -0.103 4.103 27 N -0.141 5.141 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.218 0.782 36 H 0.248 0.752 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.085 0.915 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.849 10.630 -25.940 30.434 hybrid contribution 0.382 -0.984 2.052 2.307 sum -11.466 9.646 -23.888 28.198 Atomic orbital electron populations 1.22235 0.92214 1.02883 1.04556 1.21780 0.95878 0.93738 0.84384 1.22257 1.02006 0.92532 1.05409 1.49123 1.47757 1.07061 1.09047 1.23124 0.94211 1.00016 0.84570 1.20191 1.21718 0.96079 0.94945 1.17500 0.75620 0.83156 0.85377 1.90732 1.56780 1.27766 1.72338 1.45564 1.66393 1.13323 1.10647 1.21160 1.00242 0.95447 0.81221 1.22563 0.86697 0.95947 0.92777 0.91167 1.21524 0.97504 0.88685 0.93319 1.44332 1.31568 1.25037 1.32807 1.19589 0.92754 1.22767 1.04212 0.90910 1.25854 0.95646 1.03458 0.99809 1.70199 1.02958 1.41460 1.43635 0.85140 0.78376 0.78628 0.77881 1.18879 1.21441 1.22125 1.21316 0.87820 0.99137 0.90050 1.23150 0.99098 0.84668 0.95441 1.87815 1.39604 1.37909 1.65488 1.24422 0.96487 0.99434 0.89911 1.77136 1.21927 0.94033 1.21006 0.91885 0.87637 0.92969 0.87148 0.92126 0.87212 0.90937 0.78232 0.75174 0.89333 0.92008 0.90884 0.96483 0.93972 0.98388 0.91474 0.87397 0.92929 0.77327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.52 71.98 0.69 -0.50 16 2 C 0.14 1.36 3.91 44.99 0.18 1.54 16 3 C -0.16 -0.92 8.83 71.98 0.64 -0.28 16 4 N -0.35 -5.99 3.49 -325.76 -1.14 -7.13 16 5 C 0.13 2.54 10.39 84.28 0.88 3.41 16 6 C -0.31 -7.18 6.13 -20.15 -0.12 -7.30 16 7 C 0.59 16.65 7.81 86.66 0.68 17.33 16 8 O -0.59 -20.66 16.90 -4.02 -0.07 -20.73 16 9 N -0.71 -18.27 5.50 -466.38 -2.56 -20.83 16 10 C 0.14 4.23 5.35 86.38 0.46 4.69 16 11 C 0.08 2.65 2.80 30.55 0.09 2.74 16 12 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 13 C 0.12 4.79 6.00 86.21 0.52 5.31 16 14 N -0.61 -30.73 3.05 -698.37 -2.13 -32.86 16 15 C -0.26 -14.30 9.65 84.03 0.81 -13.49 16 16 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 17 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 18 N -0.94 -55.11 11.15 21.65 0.24 -54.87 16 19 Si 0.97 44.23 29.58 68.60 2.03 46.26 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 C 0.14 6.85 5.44 86.35 0.47 7.32 16 24 C 0.05 1.98 6.98 72.08 0.50 2.48 16 25 O -0.39 -13.83 10.33 -148.98 -1.54 -15.37 16 26 C 0.08 1.69 11.50 85.65 0.99 2.68 16 27 N -0.32 -6.80 12.50 -56.27 -0.70 -7.51 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.07 0.39 7.13 -2.38 -0.02 0.37 16 35 H 0.20 2.99 7.24 -2.91 -0.02 2.97 16 36 H 0.41 8.82 7.43 -92.71 -0.69 8.13 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.84 7.96 -2.38 -0.02 2.82 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.07 3.57 6.16 -2.39 -0.01 3.56 16 44 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.21 2.98 7.50 -2.91 -0.02 2.95 16 Total: -1.00 -73.61 378.54 1.60 -72.01 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.29 Total: 17.57 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 7.18 Total: 23.46 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.30 Total: -123.20 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.61 Total: -36.10 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.61 1.60 -72.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035578349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.267 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds