Wall clock time and date at job start Tue Mar 31 2020 13:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46499 * 109.47087 * 120.00497 * 2 1 3 5 5 C 1.34257 * 125.75396 * 274.71505 * 4 2 1 6 6 C 1.38046 * 107.41542 * 179.85003 * 5 4 2 7 7 C 1.47433 * 126.41304 * 180.15750 * 6 5 4 8 8 O 1.21604 * 120.00076 * 0.32773 * 7 6 5 9 9 N 1.34775 * 119.99466 * 180.32332 * 7 6 5 10 10 C 1.46502 * 119.99415 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46971 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51147 * 60.00197 * 11 10 9 13 13 C 1.53294 * 109.51059 * 180.10140 * 11 10 9 14 14 N 1.47159 * 108.38143 * 172.22762 * 13 11 10 15 15 C 1.36938 * 120.98052 * 129.49245 * 14 13 11 16 16 H 1.08004 * 119.99391 * 206.22430 * 15 14 13 17 17 C 1.38804 * 120.00092 * 26.22075 * 15 14 13 18 18 N 1.31619 * 120.00353 * 16.91175 * 17 15 14 19 19 Si 1.86806 * 120.00088 * 196.90962 * 17 15 14 20 20 H 1.48504 * 109.46909 * 90.00098 * 19 17 15 21 21 H 1.48499 * 109.47156 * 210.00257 * 19 17 15 22 22 H 1.48505 * 109.46850 * 330.00281 * 19 17 15 23 23 C 1.47150 * 118.03576 * 309.46219 * 14 13 11 24 24 C 1.53301 * 108.38263 * 50.53883 * 23 14 13 25 25 O 1.42958 * 109.26490 * 307.71853 * 24 23 14 26 26 C 1.41288 * 107.17030 * 0.41314 * 6 5 4 27 27 N 1.30451 * 108.02281 * 359.74192 * 26 6 5 28 28 H 1.08999 * 109.47263 * 59.99061 * 1 2 3 29 29 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46642 * 299.99385 * 1 2 3 31 31 H 1.09005 * 109.46642 * 240.00615 * 2 1 3 32 32 H 1.09005 * 109.47152 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47431 * 300.00336 * 3 2 1 34 34 H 1.09005 * 109.46892 * 60.00769 * 3 2 1 35 35 H 1.07998 * 126.28859 * 359.97438 * 5 4 2 36 36 H 0.96996 * 120.00748 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47487 * 300.00296 * 10 9 7 38 38 H 1.09006 * 109.46883 * 60.00430 * 10 9 7 39 39 H 1.09000 * 109.68494 * 291.95131 * 13 11 10 40 40 H 1.09006 * 109.68374 * 52.47157 * 13 11 10 41 41 H 0.97002 * 120.00480 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.67935 * 170.25528 * 23 14 13 43 43 H 1.08993 * 109.68500 * 290.78008 * 23 14 13 44 44 H 1.08999 * 109.51041 * 67.61720 * 24 23 14 45 45 H 1.08993 * 109.51180 * 187.76964 * 24 23 14 46 46 H 1.08002 * 125.98708 * 179.78546 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1954 -0.1352 2.4055 6 6 2.6626 -1.1227 3.2494 7 6 2.9938 -0.9687 4.6778 8 8 2.8563 0.1105 5.2209 9 7 3.4488 -2.0243 5.3815 10 6 3.7784 -1.8712 6.8007 11 6 4.2675 -3.2095 7.3579 12 1 5.1550 -3.5288 6.8116 13 6 4.6103 -3.0510 8.8436 14 7 4.8963 -4.3835 9.3987 15 6 6.0361 -4.6164 10.1210 16 1 6.4557 -5.6108 10.1618 17 6 6.6521 -3.5746 10.8007 18 7 5.9919 -2.4604 11.0351 19 14 8.4180 -3.7541 11.3828 20 1 9.3401 -3.2768 10.3210 21 1 8.6184 -2.9460 12.6125 22 1 8.6993 -5.1821 11.6776 23 6 3.9210 -5.4581 9.1551 24 6 3.6118 -5.4993 7.6542 25 8 3.2387 -4.1916 7.2133 26 6 2.7697 -2.3071 2.4865 27 7 2.3847 -2.0393 1.2692 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.0052 0.8945 2.6699 36 1 3.5588 -2.8851 4.9482 37 1 4.5622 -1.1221 6.9130 38 1 2.8907 -1.5530 7.3475 39 1 5.4868 -2.4122 8.9521 40 1 3.7652 -2.6071 9.3701 41 1 6.4223 -1.7324 11.5104 42 1 4.3411 -6.4134 9.4697 43 1 3.0066 -5.2575 9.7134 44 1 4.4967 -5.8278 7.1091 45 1 2.7917 -6.1933 7.4703 46 1 3.1100 -3.2662 2.8480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035578353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:44 Heat of formation + Delta-G solvation = 16.178462 kcal Electronic energy + Delta-G solvation = -27048.866442 eV Core-core repulsion = 23169.059061 eV Total energy + Delta-G solvation = -3879.807381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59805 -39.18435 -38.25600 -36.13940 -34.71957 -34.24109 -31.43443 -31.10264 -30.66138 -29.99313 -27.87780 -27.34662 -25.67730 -23.70034 -23.22774 -22.38430 -21.56208 -20.25532 -20.12812 -19.53656 -18.02498 -16.95184 -16.02685 -15.96344 -15.75368 -15.55647 -15.23362 -15.06196 -14.58944 -14.35913 -14.24722 -14.00818 -13.71568 -13.35177 -13.23440 -13.12438 -12.90452 -12.75396 -12.70560 -12.66532 -12.14051 -11.91250 -11.75024 -11.49322 -11.18399 -11.08503 -10.83793 -10.71608 -10.39432 -10.24657 -10.01344 -9.78653 -9.72079 -9.61627 -9.05496 -8.94818 -8.61942 -8.54067 -6.75281 -5.83890 -3.27804 1.43099 2.04417 2.09009 3.35038 3.41961 3.43605 3.48997 3.61054 3.99528 4.29450 4.31770 4.44594 4.49416 4.51590 4.60929 4.92897 4.99006 5.08861 5.14968 5.22478 5.22926 5.30535 5.36525 5.53915 5.54379 5.59362 5.64519 5.70013 5.88880 5.95671 6.08047 6.14868 6.25628 6.28626 6.42216 6.53220 6.62911 6.75985 6.80222 7.08652 7.36433 7.49857 7.71381 7.82154 7.86843 8.33657 8.51295 9.11339 9.74305 10.31356 11.24116 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002376 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.348221 B =11781.459914 C =12347.006414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.358 5.358 5 C 0.126 3.874 6 C -0.288 4.288 7 C 0.590 3.410 8 O -0.556 6.556 9 N -0.715 5.715 10 C 0.135 3.865 11 C 0.055 3.945 12 H 0.056 0.944 13 C 0.152 3.848 14 N -0.595 5.595 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.389 6.389 26 C 0.082 3.918 27 N -0.300 5.300 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.185 0.815 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 3.969 -22.613 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.138 5.138 5 C -0.025 4.025 6 C -0.303 4.303 7 C 0.377 3.623 8 O -0.435 6.435 9 N -0.365 5.365 10 C 0.011 3.989 11 C -0.004 4.004 12 H 0.074 0.926 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.018 4.018 24 C -0.028 4.028 25 O -0.309 6.309 26 C -0.106 4.106 27 N -0.119 5.119 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.202 0.798 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.483 4.498 -23.467 25.707 hybrid contribution 1.318 -0.283 1.162 1.780 sum -8.165 4.215 -22.304 24.123 Atomic orbital electron populations 1.22259 0.93234 1.03557 1.03388 1.21388 0.95108 0.92901 0.85567 1.22250 1.02596 0.93764 1.04058 1.48753 1.48939 1.07520 1.08558 1.22849 0.95565 0.99581 0.84540 1.20328 1.19434 0.94548 0.95949 1.17227 0.76574 0.83911 0.84548 1.90765 1.54826 1.26540 1.71414 1.45717 1.66809 1.12555 1.11422 1.21400 1.01447 0.96475 0.79565 1.23150 0.89745 0.87226 1.00322 0.92621 1.21315 1.01268 0.88406 0.86460 1.44054 1.21047 1.05904 1.60832 1.19194 0.99795 0.95830 1.23725 0.91338 1.25060 0.99157 0.97591 0.97823 1.70018 1.35231 1.06205 1.43099 0.86250 0.84784 0.77560 0.77928 1.21336 1.21657 1.20417 1.21601 0.93456 0.93438 0.93257 1.22999 0.99126 0.84023 0.96642 1.87782 1.39740 1.18567 1.84791 1.24096 0.97248 0.98957 0.90286 1.77153 1.21157 0.92894 1.20691 0.90226 0.91430 0.91618 0.87618 0.91226 0.89671 0.91162 0.79832 0.76553 0.89992 0.90740 0.88583 0.95038 0.93389 0.92019 0.95563 0.93874 0.90041 0.79343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.52 37.16 0.35 -0.51 16 2 C 0.15 0.94 3.92 -67.93 -0.27 0.68 16 3 C -0.17 -0.74 8.82 37.16 0.33 -0.41 16 4 N -0.36 -3.52 3.50 -54.31 -0.19 -3.71 16 5 C 0.13 1.37 10.39 -16.56 -0.17 1.20 16 6 C -0.29 -3.68 6.13 -105.06 -0.64 -4.33 16 7 C 0.59 9.23 7.81 -12.52 -0.10 9.13 16 8 O -0.56 -10.54 16.90 5.27 0.09 -10.46 16 9 N -0.72 -10.65 5.44 -61.38 -0.33 -10.98 16 10 C 0.13 2.33 5.37 -4.04 -0.02 2.31 16 11 C 0.06 1.04 2.86 -26.58 -0.08 0.97 16 12 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 13 C 0.15 3.59 4.73 -3.53 -0.02 3.57 16 14 N -0.59 -14.80 3.05 -171.82 -0.52 -15.33 16 15 C -0.26 -6.93 9.65 -15.06 -0.15 -7.08 16 16 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 17 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -25.90 11.14 55.49 0.62 -25.28 16 19 Si 0.91 21.43 29.59 -169.99 -5.03 16.40 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.11 2.26 6.74 -3.53 -0.02 2.23 16 24 C 0.05 0.87 6.98 37.31 0.26 1.13 16 25 O -0.39 -7.20 10.14 -35.23 -0.36 -7.56 16 26 C 0.08 0.93 11.50 -16.98 -0.20 0.73 16 27 N -0.30 -3.52 12.50 30.86 0.39 -3.13 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.30 7.13 -51.93 -0.37 -0.07 16 35 H 0.18 1.65 7.22 -52.49 -0.38 1.27 16 36 H 0.40 5.11 7.31 -40.82 -0.30 4.81 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.19 1.63 7.50 -52.49 -0.39 1.24 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -33.76 378.23 -7.66 -41.42 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.22 Total: 3.31 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.80 Total: 9.60 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.04 Total: -58.43 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.27 Total: -18.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.76 -7.66 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035578353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.602 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds