Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46499 * 109.47087 * 120.00497 * 2 1 3 5 5 C 1.34257 * 125.75396 * 274.71505 * 4 2 1 6 6 C 1.38046 * 107.41542 * 179.85003 * 5 4 2 7 7 C 1.47433 * 126.41304 * 180.15750 * 6 5 4 8 8 O 1.21604 * 120.00076 * 0.32773 * 7 6 5 9 9 N 1.34775 * 119.99466 * 180.32332 * 7 6 5 10 10 C 1.46502 * 119.99415 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46971 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51147 * 60.00197 * 11 10 9 13 13 C 1.53294 * 109.51059 * 180.10140 * 11 10 9 14 14 N 1.47159 * 108.38143 * 172.22762 * 13 11 10 15 15 C 1.36938 * 120.98052 * 129.49245 * 14 13 11 16 16 H 1.08004 * 119.99391 * 206.22430 * 15 14 13 17 17 C 1.38804 * 120.00092 * 26.22075 * 15 14 13 18 18 N 1.31619 * 120.00353 * 16.91175 * 17 15 14 19 19 Si 1.86806 * 120.00088 * 196.90962 * 17 15 14 20 20 H 1.48504 * 109.46909 * 90.00098 * 19 17 15 21 21 H 1.48499 * 109.47156 * 210.00257 * 19 17 15 22 22 H 1.48505 * 109.46850 * 330.00281 * 19 17 15 23 23 C 1.47150 * 118.03576 * 309.46219 * 14 13 11 24 24 C 1.53301 * 108.38263 * 50.53883 * 23 14 13 25 25 O 1.42958 * 109.26490 * 307.71853 * 24 23 14 26 26 C 1.41288 * 107.17030 * 0.41314 * 6 5 4 27 27 N 1.30451 * 108.02281 * 359.74192 * 26 6 5 28 28 H 1.08999 * 109.47263 * 59.99061 * 1 2 3 29 29 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46642 * 299.99385 * 1 2 3 31 31 H 1.09005 * 109.46642 * 240.00615 * 2 1 3 32 32 H 1.09005 * 109.47152 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47431 * 300.00336 * 3 2 1 34 34 H 1.09005 * 109.46892 * 60.00769 * 3 2 1 35 35 H 1.07998 * 126.28859 * 359.97438 * 5 4 2 36 36 H 0.96996 * 120.00748 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47487 * 300.00296 * 10 9 7 38 38 H 1.09006 * 109.46883 * 60.00430 * 10 9 7 39 39 H 1.09000 * 109.68494 * 291.95131 * 13 11 10 40 40 H 1.09006 * 109.68374 * 52.47157 * 13 11 10 41 41 H 0.97002 * 120.00480 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.67935 * 170.25528 * 23 14 13 43 43 H 1.08993 * 109.68500 * 290.78008 * 23 14 13 44 44 H 1.08999 * 109.51041 * 67.61720 * 24 23 14 45 45 H 1.08993 * 109.51180 * 187.76964 * 24 23 14 46 46 H 1.08002 * 125.98708 * 179.78546 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1954 -0.1352 2.4055 6 6 2.6626 -1.1227 3.2494 7 6 2.9938 -0.9687 4.6778 8 8 2.8563 0.1105 5.2209 9 7 3.4488 -2.0243 5.3815 10 6 3.7784 -1.8712 6.8007 11 6 4.2675 -3.2095 7.3579 12 1 5.1550 -3.5288 6.8116 13 6 4.6103 -3.0510 8.8436 14 7 4.8963 -4.3835 9.3987 15 6 6.0361 -4.6164 10.1210 16 1 6.4557 -5.6108 10.1618 17 6 6.6521 -3.5746 10.8007 18 7 5.9919 -2.4604 11.0351 19 14 8.4180 -3.7541 11.3828 20 1 9.3401 -3.2768 10.3210 21 1 8.6184 -2.9460 12.6125 22 1 8.6993 -5.1821 11.6776 23 6 3.9210 -5.4581 9.1551 24 6 3.6118 -5.4993 7.6542 25 8 3.2387 -4.1916 7.2133 26 6 2.7697 -2.3071 2.4865 27 7 2.3847 -2.0393 1.2692 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.0052 0.8945 2.6699 36 1 3.5588 -2.8851 4.9482 37 1 4.5622 -1.1221 6.9130 38 1 2.8907 -1.5530 7.3475 39 1 5.4868 -2.4122 8.9521 40 1 3.7652 -2.6071 9.3701 41 1 6.4223 -1.7324 11.5104 42 1 4.3411 -6.4134 9.4697 43 1 3.0066 -5.2575 9.7134 44 1 4.4967 -5.8278 7.1091 45 1 2.7917 -6.1933 7.4703 46 1 3.1100 -3.2662 2.8480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035578353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = -7.557041 kcal Electronic energy + Delta-G solvation = -27049.895691 eV Core-core repulsion = 23169.059061 eV Total energy + Delta-G solvation = -3880.836629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.44667 -40.55706 -39.73153 -36.72062 -36.42910 -35.75921 -33.24637 -32.64111 -31.46806 -31.01177 -29.03903 -28.25164 -27.29794 -25.13243 -24.55772 -23.34188 -23.01004 -21.58955 -20.97188 -20.88586 -19.06397 -18.80500 -17.47661 -17.16943 -16.84830 -16.74991 -16.50467 -16.06987 -16.00940 -15.58425 -15.50388 -15.24528 -15.02712 -14.98869 -14.56029 -14.31940 -13.93707 -13.87692 -13.59303 -13.20528 -13.15808 -13.08494 -12.97714 -12.66819 -12.51599 -12.39937 -12.33317 -12.14957 -12.07527 -11.95425 -11.84010 -11.28887 -10.96917 -10.75411 -10.58452 -10.53639 -10.16397 -9.64161 -8.74409 -7.90054 -5.37728 0.53068 1.16138 1.34262 1.47362 1.48751 1.57674 2.25884 2.47918 2.49623 2.82692 3.24619 3.41427 3.52722 3.75578 3.84892 3.90801 4.04902 4.08205 4.10784 4.14272 4.29642 4.35713 4.47947 4.54853 4.61868 4.64282 4.66410 4.71098 4.75008 4.79695 4.87172 4.89674 5.01332 5.09514 5.15599 5.20071 5.25100 5.39042 5.46702 5.54919 5.61432 5.89699 6.28332 6.35048 6.50102 6.67364 7.06562 7.30987 7.75642 8.29321 9.15748 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002376 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.348221 B =11781.459914 C =12347.006414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.313 4.313 7 C 0.592 3.408 8 O -0.596 6.596 9 N -0.705 5.705 10 C 0.146 3.854 11 C 0.077 3.923 12 H 0.066 0.934 13 C 0.159 3.841 14 N -0.614 5.614 15 C -0.265 4.265 16 H 0.074 0.926 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.101 3.899 24 C 0.057 3.943 25 O -0.389 6.389 26 C 0.086 3.914 27 N -0.319 5.319 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.200 0.800 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.000 1.000 41 H 0.251 0.749 42 H 0.072 0.928 43 H 0.015 0.985 44 H 0.055 0.945 45 H 0.121 0.879 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 3.022 -25.097 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.222 4.222 4 N -0.129 5.129 5 C -0.020 4.020 6 C -0.328 4.328 7 C 0.381 3.619 8 O -0.479 6.479 9 N -0.356 5.356 10 C 0.021 3.979 11 C 0.018 3.982 12 H 0.083 0.917 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.395 4.395 16 H 0.092 0.908 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.024 4.024 24 C -0.021 4.021 25 O -0.308 6.308 26 C -0.101 4.101 27 N -0.139 5.139 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.217 0.783 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.139 0.861 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.655 3.490 -26.012 27.965 hybrid contribution 1.273 -0.010 1.892 2.281 sum -8.382 3.480 -24.119 25.770 Atomic orbital electron populations 1.22239 0.92256 1.02902 1.04513 1.21787 0.95856 0.93727 0.84377 1.22262 1.02036 0.92566 1.05375 1.49117 1.47677 1.07012 1.09139 1.23106 0.94223 0.99973 0.84659 1.20160 1.21925 0.96123 0.94618 1.17590 0.75613 0.83163 0.85549 1.90739 1.56650 1.28016 1.72462 1.45519 1.66593 1.13265 1.10194 1.21078 1.00435 0.95379 0.80989 1.22748 0.90394 0.88171 0.96928 0.91657 1.21098 0.98704 0.87709 0.89306 1.44358 1.21590 1.06966 1.60968 1.19560 1.00583 0.96038 1.23272 0.90786 1.25851 1.02842 0.97458 0.98563 1.70184 1.36698 1.06943 1.44355 0.85220 0.80124 0.77843 0.76972 1.20999 1.22359 1.19094 1.21834 0.92040 0.92600 0.95932 1.23082 1.01308 0.83935 0.93732 1.87799 1.39521 1.19062 1.84425 1.24421 0.96532 0.99371 0.89813 1.77123 1.21795 0.94046 1.20916 0.87568 0.92922 0.92033 0.86989 0.92064 0.87163 0.91065 0.78344 0.75039 0.90663 0.92403 0.91455 0.98213 0.93949 0.90938 0.96740 0.92646 0.86121 0.77196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.52 71.98 0.69 -0.66 16 2 C 0.14 1.48 3.92 44.99 0.18 1.66 16 3 C -0.16 -1.06 8.82 71.98 0.63 -0.43 16 4 N -0.35 -6.35 3.50 -325.74 -1.14 -7.49 16 5 C 0.13 2.75 10.39 84.28 0.88 3.62 16 6 C -0.31 -7.74 6.13 -20.15 -0.12 -7.86 16 7 C 0.59 18.39 7.81 86.67 0.68 19.06 16 8 O -0.60 -22.99 16.90 -4.04 -0.07 -23.06 16 9 N -0.71 -20.57 5.44 -466.36 -2.54 -23.11 16 10 C 0.15 5.13 5.37 86.38 0.46 5.60 16 11 C 0.08 2.90 2.86 30.69 0.09 2.99 16 12 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 13 C 0.16 7.71 4.73 86.35 0.41 8.12 16 14 N -0.61 -30.81 3.05 -697.53 -2.13 -32.93 16 15 C -0.26 -14.37 9.65 84.03 0.81 -13.56 16 16 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 17 C -0.05 -2.87 4.95 84.86 0.42 -2.45 16 18 N -0.94 -55.56 11.14 21.65 0.24 -55.32 16 19 Si 0.97 44.47 29.59 68.60 2.03 46.50 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.10 4.10 6.74 86.36 0.58 4.68 16 24 C 0.06 1.81 6.98 72.08 0.50 2.31 16 25 O -0.39 -13.70 10.14 -148.98 -1.51 -15.21 16 26 C 0.09 1.81 11.50 85.65 0.99 2.80 16 27 N -0.32 -6.99 12.50 -56.27 -0.70 -7.70 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16 33 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.07 0.47 7.13 -2.38 -0.02 0.45 16 35 H 0.20 3.35 7.22 -2.91 -0.02 3.33 16 36 H 0.41 9.85 7.31 -92.71 -0.68 9.17 16 37 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.07 3.65 6.14 -2.39 -0.01 3.64 16 40 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 41 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.07 2.73 7.96 -2.39 -0.02 2.72 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.21 3.16 7.50 -2.91 -0.02 3.14 16 Total: -1.00 -74.48 378.23 1.68 -72.80 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.30 Total: 19.64 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 7.19 Total: 25.88 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.27 Total: -126.56 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.58 Total: -38.27 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.48 1.68 -72.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035578353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.244 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds