Wall clock time and date at job start Tue Mar 31 2020 14:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35776 * 117.00432 * 2 1 4 4 C 1.35592 * 126.08682 * 175.34928 * 3 2 1 5 5 C 1.41055 * 107.79665 * 180.14376 * 4 3 2 6 6 C 1.47718 * 125.98174 * 179.86682 * 5 4 3 7 7 O 1.21579 * 119.99815 * 6.44744 * 6 5 4 8 8 N 1.34768 * 120.00359 * 186.45445 * 6 5 4 9 9 C 1.46926 * 120.63117 * 355.73065 * 8 6 5 10 10 C 1.53190 * 108.77842 * 126.41162 * 9 8 6 11 11 C 1.53040 * 109.31189 * 54.64043 * 10 9 8 12 12 H 1.09000 * 109.46216 * 58.63523 * 11 10 9 13 13 N 1.46501 * 109.46209 * 178.61575 * 11 10 9 14 14 C 1.36940 * 119.99612 * 274.99737 * 13 11 10 15 15 H 1.07994 * 120.00114 * 0.02562 * 14 13 11 16 16 C 1.38806 * 119.99654 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99832 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00308 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46943 * 90.00221 * 18 16 14 20 20 H 1.48501 * 109.47343 * 210.00405 * 18 16 14 21 21 H 1.48495 * 109.46969 * 330.00009 * 18 16 14 22 22 C 1.53074 * 109.65403 * 298.69712 * 11 10 9 23 23 H 1.08996 * 109.39262 * 301.27592 * 22 11 10 24 24 C 1.53002 * 109.62096 * 181.17042 * 22 11 10 25 25 C 1.46925 * 120.63519 * 175.75109 * 8 6 5 26 26 N 1.31867 * 108.03697 * 359.59804 * 5 4 3 27 27 N 1.35846 * 126.07894 * 355.05158 * 3 2 1 28 28 C 1.46499 * 125.95256 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46659 * 55.95335 * 1 2 3 30 30 H 1.08997 * 109.47184 * 175.95007 * 1 2 3 31 31 H 1.09007 * 109.47173 * 295.95736 * 1 2 3 32 32 H 1.07997 * 126.09650 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.58575 * 246.20628 * 9 8 6 34 34 H 1.09007 * 109.58650 * 6.48050 * 9 8 6 35 35 H 1.09009 * 109.49594 * 174.58296 * 10 9 8 36 36 H 1.08996 * 109.49732 * 294.64912 * 10 9 8 37 37 H 0.96993 * 119.99956 * 94.99235 * 13 11 10 38 38 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47337 * 300.10690 * 24 22 11 40 40 H 1.08998 * 109.47099 * 60.10996 * 24 22 11 41 41 H 1.09001 * 109.46862 * 180.10424 * 24 22 11 42 42 H 1.08997 * 109.58604 * 353.37458 * 25 8 6 43 43 H 1.09005 * 109.59115 * 113.65350 * 25 8 6 44 44 H 1.08999 * 109.46968 * 276.67007 * 28 27 3 45 45 H 1.09001 * 109.46877 * 36.66195 * 28 27 3 46 46 H 1.08993 * 109.47118 * 156.66381 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3812 1.4254 0.0888 5 6 3.5959 2.8191 0.0563 6 6 4.9061 3.4973 0.1302 7 8 5.9310 2.8435 0.1105 8 7 4.9655 4.8407 0.2195 9 6 3.7414 5.6504 0.1506 10 6 3.6865 6.5665 1.3772 11 6 4.9775 7.3846 1.4561 12 1 5.0929 7.9698 0.5438 13 7 4.9145 8.2858 2.6094 14 6 4.3035 9.5058 2.4924 15 1 3.8677 9.8033 1.5501 16 6 4.2433 10.3594 3.5853 17 7 3.6556 11.5318 3.4730 18 14 4.9952 9.8439 5.2157 19 1 6.4135 10.2809 5.2669 20 1 4.2424 10.4748 6.3295 21 1 4.9273 8.3664 5.3469 22 6 6.1749 6.4434 1.6095 23 1 6.0494 5.8419 2.5097 24 6 7.4622 7.2632 1.7175 25 6 6.2556 5.5236 0.3871 26 7 2.4228 3.4105 -0.0574 27 7 1.4341 2.4192 -0.0947 28 6 -0.0081 2.6469 -0.2144 29 1 -0.3633 0.5754 -0.8515 30 1 -0.3633 -1.0251 -0.0726 31 1 -0.3634 0.4498 0.9240 32 1 4.1442 0.6657 0.1718 33 1 3.7535 6.2546 -0.7566 34 1 2.8701 4.9955 0.1418 35 1 2.8338 7.2400 1.2903 36 1 3.5824 5.9621 2.2783 37 1 5.3055 8.0184 3.4558 38 1 3.6132 12.1282 4.2368 39 1 7.5861 7.8655 0.8175 40 1 7.4043 7.9175 2.5874 41 1 8.3133 6.5907 1.8248 42 1 7.0432 4.7852 0.5368 43 1 6.4740 6.1155 -0.5018 44 1 -0.3066 2.5454 -1.2578 45 1 -0.5430 1.9138 0.3894 46 1 -0.2477 3.6507 0.1361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036107344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:34 Heat of formation + Delta-G solvation = 56.554975 kcal Electronic energy + Delta-G solvation = -28005.234882 eV Core-core repulsion = 24127.178358 eV Total energy + Delta-G solvation = -3878.056524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92540 -39.98300 -38.55646 -37.60363 -34.73609 -33.80565 -32.82475 -31.51101 -30.47878 -29.78009 -28.32839 -27.19060 -26.08368 -25.20279 -23.12764 -22.11835 -21.76631 -21.43887 -19.94548 -19.21427 -17.97414 -17.44392 -17.06410 -16.79816 -16.03355 -15.58791 -15.32943 -15.24129 -14.91985 -14.66784 -14.29419 -14.19423 -13.77181 -13.68235 -13.52056 -13.24243 -13.23559 -12.85993 -12.48428 -12.38879 -12.09602 -11.76685 -11.75729 -11.65625 -11.40056 -11.05936 -10.91915 -10.77681 -10.53666 -10.29232 -10.21222 -9.83307 -9.69650 -9.55655 -9.43428 -8.87583 -8.68943 -8.46492 -7.23831 -5.76299 -3.10971 1.16011 1.81059 1.98051 2.49197 3.11280 3.36228 3.38219 3.41788 3.46128 3.88127 4.30519 4.33432 4.56921 4.60020 4.63106 4.75309 4.93677 5.04671 5.06046 5.10665 5.20872 5.32063 5.38742 5.49850 5.60151 5.66218 5.68286 5.75046 5.78241 5.94674 6.02333 6.04665 6.20809 6.31454 6.34172 6.40273 6.52331 6.64902 6.73217 6.86838 6.99210 7.04357 7.13577 7.51770 8.00329 8.16960 8.43150 9.21855 9.94792 10.15275 11.42192 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.003226 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.824393 B = 8678.540812 C = 9717.543649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.271 3.729 4 C -0.235 4.235 5 C 0.068 3.932 6 C 0.596 3.404 7 O -0.534 6.534 8 N -0.589 5.589 9 C 0.076 3.924 10 C -0.146 4.146 11 C 0.187 3.813 12 H 0.057 0.943 13 N -0.746 5.746 14 C -0.239 4.239 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.935 5.935 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.278 1.278 22 C -0.114 4.114 23 H 0.069 0.931 24 C -0.136 4.136 25 C 0.121 3.879 26 N -0.245 5.245 27 N -0.396 5.396 28 C 0.073 3.927 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.066 0.934 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 -22.454 -9.107 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.104 3.896 4 C -0.265 4.265 5 C -0.099 4.099 6 C 0.381 3.619 7 O -0.410 6.410 8 N -0.321 5.321 9 C -0.048 4.048 10 C -0.188 4.188 11 C 0.078 3.922 12 H 0.075 0.925 13 N -0.388 5.388 14 C -0.368 4.368 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.204 1.204 22 C -0.134 4.134 23 H 0.087 0.913 24 C -0.194 4.194 25 C -0.001 4.001 26 N -0.076 5.076 27 N -0.191 5.191 28 C -0.068 4.068 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.131 -21.794 -9.298 24.745 hybrid contribution 0.252 -0.765 1.372 1.591 sum -6.879 -22.559 -7.926 24.881 Atomic orbital electron populations 1.23656 0.77975 1.05327 1.01546 1.86303 1.21617 1.21698 1.89889 1.19595 0.91121 0.78977 0.99948 1.20300 0.92105 0.95485 1.18568 1.21880 0.92703 0.93037 1.02253 1.17013 0.86014 0.81737 0.77174 1.90780 1.34020 1.64963 1.51188 1.48029 1.09368 1.04884 1.69808 1.22833 0.87564 0.95282 0.99113 1.22579 1.01772 0.98043 0.96356 1.20216 0.90621 0.89507 0.91905 0.92518 1.42783 1.69703 1.17347 1.08919 1.19060 1.28765 0.90646 0.98371 0.89212 1.24649 1.00708 0.96257 0.97539 1.69701 1.48808 1.09279 1.30549 0.86590 0.79178 0.77816 0.85199 1.21077 1.21870 1.20374 1.21796 0.97164 0.96784 0.97662 0.91289 1.21661 0.95251 0.99420 1.03104 1.21748 0.84685 0.95506 0.98193 1.77464 0.95365 1.09541 1.25189 1.49431 1.07393 1.03190 1.59117 1.22579 0.74918 1.05911 1.03364 0.91689 0.87269 0.91799 0.81728 0.91572 0.85306 0.90275 0.92566 0.80676 0.93133 0.92501 0.91480 0.93472 0.89122 0.91068 0.90273 0.88611 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.37 101.05 0.95 0.99 16 2 O -0.29 -2.58 10.57 -19.04 -0.20 -2.78 16 3 C 0.27 3.00 7.78 -16.72 -0.13 2.87 16 4 C -0.23 -3.07 10.60 -39.46 -0.42 -3.49 16 5 C 0.07 0.98 6.87 -82.91 -0.57 0.41 16 6 C 0.60 9.54 7.70 -12.39 -0.10 9.45 16 7 O -0.53 -9.63 16.34 5.30 0.09 -9.55 16 8 N -0.59 -8.97 2.97 -173.93 -0.52 -9.48 16 9 C 0.08 1.12 6.31 -3.71 -0.02 1.09 16 10 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 11 C 0.19 3.51 2.19 -67.87 -0.15 3.36 16 12 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 13 N -0.75 -17.16 4.22 -53.37 -0.23 -17.38 16 14 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 15 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.94 -29.11 13.97 55.49 0.78 -28.33 16 18 Si 0.88 22.07 27.73 -169.99 -4.71 17.35 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 22 C -0.11 -1.84 2.46 -90.48 -0.22 -2.06 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 C -0.14 -2.10 9.03 37.16 0.34 -1.76 16 25 C 0.12 1.77 5.70 -3.71 -0.02 1.75 16 26 N -0.25 -3.25 8.88 33.34 0.30 -2.96 16 27 N -0.40 -4.13 4.03 -68.19 -0.28 -4.41 16 28 C 0.07 0.41 9.63 59.85 0.58 0.98 16 29 H 0.06 0.18 5.99 -51.93 -0.31 -0.13 16 30 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.20 6.53 -51.93 -0.34 -0.14 16 32 H 0.17 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.13 1.85 3.68 -121.91 -0.45 1.40 16 35 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.36 8.32 5.39 -40.82 -0.22 8.10 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.33 7.03 -51.93 -0.36 0.97 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.31 7.72 -51.93 -0.40 -0.09 16 45 H 0.10 0.30 4.51 -51.93 -0.23 0.06 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -34.57 362.69 -6.42 -41.00 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.94 Total: 6.85 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.17 Total: 4.23 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.05 Total: -62.57 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.11 Total: -12.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.57 -6.42 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.552 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds