Wall clock time and date at job start Tue Mar 31 2020 14:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35776 * 117.00432 * 2 1 4 4 C 1.35592 * 126.08682 * 175.34928 * 3 2 1 5 5 C 1.41055 * 107.79665 * 180.14376 * 4 3 2 6 6 C 1.47718 * 125.98174 * 179.86682 * 5 4 3 7 7 O 1.21579 * 119.99815 * 6.44744 * 6 5 4 8 8 N 1.34768 * 120.00359 * 186.45445 * 6 5 4 9 9 C 1.46926 * 120.63117 * 355.73065 * 8 6 5 10 10 C 1.53190 * 108.77842 * 126.41162 * 9 8 6 11 11 C 1.53040 * 109.31189 * 54.64043 * 10 9 8 12 12 H 1.09000 * 109.46216 * 58.63523 * 11 10 9 13 13 N 1.46501 * 109.46209 * 178.61575 * 11 10 9 14 14 C 1.36940 * 119.99612 * 274.99737 * 13 11 10 15 15 H 1.07994 * 120.00114 * 0.02562 * 14 13 11 16 16 C 1.38806 * 119.99654 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99832 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00308 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46943 * 90.00221 * 18 16 14 20 20 H 1.48501 * 109.47343 * 210.00405 * 18 16 14 21 21 H 1.48495 * 109.46969 * 330.00009 * 18 16 14 22 22 C 1.53074 * 109.65403 * 298.69712 * 11 10 9 23 23 H 1.08996 * 109.39262 * 301.27592 * 22 11 10 24 24 C 1.53002 * 109.62096 * 181.17042 * 22 11 10 25 25 C 1.46925 * 120.63519 * 175.75109 * 8 6 5 26 26 N 1.31867 * 108.03697 * 359.59804 * 5 4 3 27 27 N 1.35846 * 126.07894 * 355.05158 * 3 2 1 28 28 C 1.46499 * 125.95256 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46659 * 55.95335 * 1 2 3 30 30 H 1.08997 * 109.47184 * 175.95007 * 1 2 3 31 31 H 1.09007 * 109.47173 * 295.95736 * 1 2 3 32 32 H 1.07997 * 126.09650 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.58575 * 246.20628 * 9 8 6 34 34 H 1.09007 * 109.58650 * 6.48050 * 9 8 6 35 35 H 1.09009 * 109.49594 * 174.58296 * 10 9 8 36 36 H 1.08996 * 109.49732 * 294.64912 * 10 9 8 37 37 H 0.96993 * 119.99956 * 94.99235 * 13 11 10 38 38 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47337 * 300.10690 * 24 22 11 40 40 H 1.08998 * 109.47099 * 60.10996 * 24 22 11 41 41 H 1.09001 * 109.46862 * 180.10424 * 24 22 11 42 42 H 1.08997 * 109.58604 * 353.37458 * 25 8 6 43 43 H 1.09005 * 109.59115 * 113.65350 * 25 8 6 44 44 H 1.08999 * 109.46968 * 276.67007 * 28 27 3 45 45 H 1.09001 * 109.46877 * 36.66195 * 28 27 3 46 46 H 1.08993 * 109.47118 * 156.66381 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3812 1.4254 0.0888 5 6 3.5959 2.8191 0.0563 6 6 4.9061 3.4973 0.1302 7 8 5.9310 2.8435 0.1105 8 7 4.9655 4.8407 0.2195 9 6 3.7414 5.6504 0.1506 10 6 3.6865 6.5665 1.3772 11 6 4.9775 7.3846 1.4561 12 1 5.0929 7.9698 0.5438 13 7 4.9145 8.2858 2.6094 14 6 4.3035 9.5058 2.4924 15 1 3.8677 9.8033 1.5501 16 6 4.2433 10.3594 3.5853 17 7 3.6556 11.5318 3.4730 18 14 4.9952 9.8439 5.2157 19 1 6.4135 10.2809 5.2669 20 1 4.2424 10.4748 6.3295 21 1 4.9273 8.3664 5.3469 22 6 6.1749 6.4434 1.6095 23 1 6.0494 5.8419 2.5097 24 6 7.4622 7.2632 1.7175 25 6 6.2556 5.5236 0.3871 26 7 2.4228 3.4105 -0.0574 27 7 1.4341 2.4192 -0.0947 28 6 -0.0081 2.6469 -0.2144 29 1 -0.3633 0.5754 -0.8515 30 1 -0.3633 -1.0251 -0.0726 31 1 -0.3634 0.4498 0.9240 32 1 4.1442 0.6657 0.1718 33 1 3.7535 6.2546 -0.7566 34 1 2.8701 4.9955 0.1418 35 1 2.8338 7.2400 1.2903 36 1 3.5824 5.9621 2.2783 37 1 5.3055 8.0184 3.4558 38 1 3.6132 12.1282 4.2368 39 1 7.5861 7.8655 0.8175 40 1 7.4043 7.9175 2.5874 41 1 8.3133 6.5907 1.8248 42 1 7.0432 4.7852 0.5368 43 1 6.4740 6.1155 -0.5018 44 1 -0.3066 2.5454 -1.2578 45 1 -0.5430 1.9138 0.3894 46 1 -0.2477 3.6507 0.1361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036107344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:33 Heat of formation + Delta-G solvation = 31.571936 kcal Electronic energy + Delta-G solvation = -28006.318228 eV Core-core repulsion = 24127.178358 eV Total energy + Delta-G solvation = -3879.139870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.80000 -41.16166 -39.39159 -38.91387 -36.32594 -34.76745 -34.23007 -33.21434 -31.55535 -31.25198 -29.08466 -28.03262 -27.09812 -26.60541 -24.63312 -23.32574 -23.00005 -22.54870 -21.34986 -20.37421 -19.46709 -18.81980 -17.85682 -17.71118 -17.02917 -16.72339 -16.40701 -16.33889 -16.25796 -15.99525 -15.38731 -15.20651 -15.06880 -14.84135 -14.65557 -14.48502 -14.27508 -13.96687 -13.83235 -13.70849 -13.52297 -13.12416 -12.94133 -12.82423 -12.46145 -12.35762 -12.31370 -12.12860 -12.05078 -11.86869 -11.78366 -11.50411 -11.17044 -11.14265 -10.74435 -10.25512 -9.72523 -9.54883 -9.25259 -7.99188 -5.30922 0.15887 1.03376 1.05060 1.38763 1.40249 1.47301 1.70228 2.16549 2.22121 2.50004 3.00630 3.32538 3.53935 3.61241 3.81862 3.99232 4.02078 4.06875 4.13454 4.26412 4.29968 4.31853 4.36160 4.36332 4.47539 4.53676 4.58917 4.71789 4.73693 4.75324 4.82654 4.87400 4.99286 4.99750 5.03152 5.14413 5.23230 5.35267 5.42200 5.49881 5.67132 5.81208 6.12944 6.25048 6.29571 6.36729 6.96518 7.10901 7.87652 8.06816 9.22506 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.003226 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.824393 B = 8678.540812 C = 9717.543649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.299 6.299 3 C 0.284 3.716 4 C -0.260 4.260 5 C 0.047 3.953 6 C 0.595 3.405 7 O -0.560 6.560 8 N -0.590 5.590 9 C 0.086 3.914 10 C -0.136 4.136 11 C 0.182 3.818 12 H 0.050 0.950 13 N -0.747 5.747 14 C -0.217 4.217 15 H 0.061 0.939 16 C -0.063 4.063 17 N -0.985 5.985 18 Si 0.948 3.052 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.258 1.258 22 C -0.104 4.104 23 H 0.063 0.937 24 C -0.134 4.134 25 C 0.124 3.876 26 N -0.261 5.261 27 N -0.385 5.385 28 C 0.058 3.942 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.362 0.638 38 H 0.256 0.744 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 -24.861 -9.335 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.205 6.205 3 C 0.115 3.885 4 C -0.290 4.290 5 C -0.118 4.118 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.321 5.321 9 C -0.038 4.038 10 C -0.177 4.177 11 C 0.074 3.926 12 H 0.068 0.932 13 N -0.389 5.389 14 C -0.348 4.348 15 H 0.079 0.921 16 C -0.254 4.254 17 N -0.636 5.636 18 Si 0.776 3.224 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.183 1.183 22 C -0.124 4.124 23 H 0.081 0.919 24 C -0.191 4.191 25 C 0.002 3.998 26 N -0.092 5.092 27 N -0.182 5.182 28 C -0.081 4.081 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.180 0.820 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.195 0.805 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.143 0.857 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.889 -24.255 -9.554 27.236 hybrid contribution 0.308 -0.130 1.323 1.365 sum -7.581 -24.385 -8.231 26.830 Atomic orbital electron populations 1.24088 0.75305 1.07517 1.02989 1.86331 1.24369 1.20299 1.89454 1.19488 0.90773 0.79881 0.98307 1.20381 0.93406 0.95071 1.20126 1.21657 0.92399 0.93590 1.04112 1.17239 0.86460 0.81711 0.76472 1.90752 1.35109 1.65438 1.52462 1.48065 1.09542 1.04877 1.69607 1.22768 0.88081 0.94983 0.97978 1.22380 1.00080 0.97780 0.97415 1.20434 0.92676 0.89492 0.90034 0.93198 1.42783 1.69222 1.16599 1.10301 1.19008 1.26999 0.91871 0.96939 0.92123 1.25380 1.02222 0.96450 1.01352 1.69870 1.51354 1.10850 1.31514 0.85516 0.78157 0.78392 0.80346 1.20497 1.22594 1.18294 1.21674 0.96193 0.96263 0.98232 0.91883 1.21632 0.95732 0.99498 1.02281 1.21748 0.84719 0.95340 0.97982 1.77230 0.95540 1.10772 1.25679 1.49691 1.08541 1.02461 1.57504 1.23086 0.72296 1.07083 1.05600 0.89945 0.84951 0.90505 0.82018 0.90541 0.84340 0.91919 0.93387 0.80462 0.93534 0.92163 0.93552 0.90913 0.88747 0.89534 0.87975 0.85707 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.37 113.37 1.06 1.04 16 2 O -0.30 -4.61 10.57 -91.04 -0.96 -5.57 16 3 C 0.28 5.81 7.78 83.46 0.65 6.46 16 4 C -0.26 -6.67 10.60 22.35 0.24 -6.43 16 5 C 0.05 1.34 6.87 42.34 0.29 1.63 16 6 C 0.59 18.80 7.70 86.75 0.67 19.47 16 7 O -0.56 -20.11 16.34 -3.96 -0.06 -20.18 16 8 N -0.59 -17.40 2.97 -822.45 -2.45 -19.84 16 9 C 0.09 2.44 6.31 86.36 0.55 2.99 16 10 C -0.14 -4.66 5.66 30.67 0.17 -4.48 16 11 C 0.18 6.74 2.19 45.03 0.10 6.84 16 12 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 13 N -0.75 -34.17 4.22 -322.76 -1.36 -35.53 16 14 C -0.22 -12.09 10.41 84.03 0.87 -11.21 16 15 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 16 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.98 -62.82 13.97 21.65 0.30 -62.52 16 18 Si 0.95 45.83 27.73 68.60 1.90 47.74 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 21 H -0.26 -11.49 6.52 99.48 0.65 -10.84 16 22 C -0.10 -3.21 2.46 -10.70 -0.03 -3.23 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 C -0.13 -3.89 9.03 71.98 0.65 -3.24 16 25 C 0.12 3.46 5.70 86.36 0.49 3.95 16 26 N -0.26 -6.60 8.88 -48.43 -0.43 -7.03 16 27 N -0.39 -7.22 4.03 -480.56 -1.94 -9.15 16 28 C 0.06 0.46 9.63 127.77 1.23 1.69 16 29 H 0.08 0.12 5.99 -2.39 -0.01 0.11 16 30 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.08 0.18 6.53 -2.38 -0.02 0.16 16 32 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.14 3.84 3.68 -93.92 -0.35 3.50 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.36 16.34 5.39 -92.71 -0.50 15.84 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.54 7.38 -2.39 -0.02 1.52 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.62 7.03 -2.39 -0.02 2.61 16 43 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.10 0.40 7.72 -2.39 -0.02 0.38 16 45 H 0.13 0.27 4.51 -2.39 -0.01 0.26 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -76.36 362.69 2.53 -73.84 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.11 Total: 26.01 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.41 Total: 12.25 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.87 Total: -134.07 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.03 Total: -25.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.74 kcal Total: -76.36 2.53 -73.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.409 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds