Wall clock time and date at job start Tue Mar 31 2020 14:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35769 * 117.00124 * 2 1 4 4 C 1.35596 * 126.08670 * 175.35278 * 3 2 1 5 5 C 1.41058 * 107.80133 * 180.14466 * 4 3 2 6 6 C 1.47716 * 125.98424 * 179.86155 * 5 4 3 7 7 O 1.21573 * 119.99656 * 6.46492 * 6 5 4 8 8 N 1.34775 * 120.00324 * 186.46316 * 6 5 4 9 9 C 1.46924 * 120.62589 * 355.80707 * 8 6 5 10 10 C 1.53198 * 108.77420 * 126.36745 * 9 8 6 11 11 C 1.53036 * 109.31432 * 54.63396 * 10 9 8 12 12 H 1.08993 * 109.46385 * 178.61439 * 11 10 9 13 13 N 1.46496 * 109.46301 * 58.64954 * 11 10 9 14 14 C 1.36942 * 119.99698 * 85.00346 * 13 11 10 15 15 H 1.07997 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99949 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00116 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99998 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47184 * 59.99782 * 18 16 14 20 20 H 1.48491 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47003 * 300.00544 * 18 16 14 22 22 C 1.53045 * 109.53637 * 298.63452 * 11 10 9 23 23 H 1.09001 * 109.52091 * 301.39891 * 22 11 10 24 24 C 1.52998 * 109.49875 * 181.31788 * 22 11 10 25 25 C 1.46922 * 120.62911 * 175.77820 * 8 6 5 26 26 N 1.31868 * 108.03350 * 359.59809 * 5 4 3 27 27 N 1.35844 * 126.08551 * 355.05299 * 3 2 1 28 28 C 1.46505 * 125.94613 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47054 * 175.95035 * 1 2 3 30 30 H 1.08996 * 109.46835 * 295.95360 * 1 2 3 31 31 H 1.09001 * 109.47047 * 55.94855 * 1 2 3 32 32 H 1.08006 * 126.09965 * 0.02562 * 4 3 2 33 33 H 1.08993 * 109.59313 * 6.57453 * 9 8 6 34 34 H 1.09001 * 109.70319 * 246.21856 * 9 8 6 35 35 H 1.09007 * 109.49419 * 174.58084 * 10 9 8 36 36 H 1.08989 * 109.49647 * 294.67847 * 10 9 8 37 37 H 0.97000 * 120.00658 * 265.00515 * 13 11 10 38 38 H 0.96999 * 119.99926 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46989 * 300.15868 * 24 22 11 40 40 H 1.08998 * 109.47066 * 60.16071 * 24 22 11 41 41 H 1.09003 * 109.47017 * 180.15775 * 24 22 11 42 42 H 1.08991 * 109.59115 * 353.42068 * 25 8 6 43 43 H 1.08998 * 109.58358 * 113.85123 * 25 8 6 44 44 H 1.08998 * 109.46647 * 276.66200 * 28 27 3 45 45 H 1.08998 * 109.46833 * 36.66178 * 28 27 3 46 46 H 1.08999 * 109.46899 * 156.66541 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3811 1.4255 0.0888 5 6 3.5959 2.8192 0.0563 6 6 4.9061 3.4974 0.1302 7 8 5.9309 2.8437 0.1103 8 7 4.9655 4.8409 0.2198 9 6 3.7411 5.6503 0.1527 10 6 3.6872 6.5653 1.3803 11 6 4.9781 7.3835 1.4588 12 1 4.9319 8.0532 2.3174 13 7 5.1319 8.1714 0.2333 14 6 4.5202 9.3916 0.1226 15 1 3.9248 9.7732 0.9388 16 6 4.6664 10.1384 -1.0384 17 7 5.3924 9.6736 -2.0329 18 14 3.8314 11.8026 -1.1898 19 1 4.3264 12.7041 -0.1185 20 1 4.1411 12.3929 -2.5166 21 1 2.3622 11.6334 -1.0545 22 6 6.1735 6.4402 1.6117 23 1 6.0481 5.8361 2.5103 24 6 7.4602 7.2603 1.7231 25 6 6.2556 5.5237 0.3868 26 7 2.4228 3.4105 -0.0574 27 7 1.4341 2.4192 -0.0947 28 6 -0.0082 2.6468 -0.2143 29 1 -0.3633 -1.0251 -0.0726 30 1 -0.3633 0.4497 0.9240 31 1 -0.3633 0.5754 -0.8515 32 1 4.1443 0.6657 0.1717 33 1 2.8699 4.9954 0.1466 34 1 3.7497 6.2554 -0.7539 35 1 2.8343 7.2387 1.2948 36 1 3.5847 5.9601 2.2809 37 1 5.6670 7.8288 -0.4997 38 1 5.4942 10.1953 -2.8443 39 1 7.5846 7.8650 0.8248 40 1 7.4013 7.9121 2.5947 41 1 8.3116 6.5879 1.8291 42 1 7.0434 4.7852 0.5352 43 1 6.4718 6.1184 -0.5006 44 1 -0.3066 2.5454 -1.2577 45 1 -0.5430 1.9137 0.3895 46 1 -0.2478 3.6507 0.1362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036107347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:37 Heat of formation + Delta-G solvation = 55.632916 kcal Electronic energy + Delta-G solvation = -28364.490099 eV Core-core repulsion = 24486.393592 eV Total energy + Delta-G solvation = -3878.096507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79343 -39.82332 -38.46230 -37.48176 -34.26535 -33.64323 -32.73321 -31.31809 -30.33788 -29.09704 -28.21327 -27.04740 -25.88673 -25.01853 -23.47500 -22.37823 -21.78453 -21.44216 -19.51306 -18.43292 -17.59553 -17.29987 -16.96621 -16.60269 -15.88817 -15.40715 -15.17094 -15.13642 -14.72176 -14.39045 -14.22827 -14.06968 -13.89352 -13.46106 -13.40922 -13.20088 -13.10056 -12.75818 -12.46343 -12.21947 -11.76099 -11.66062 -11.51656 -11.33925 -11.16483 -10.90832 -10.78935 -10.69898 -10.41189 -10.18699 -10.02459 -9.77319 -9.57497 -9.45712 -9.30045 -8.84106 -8.56624 -8.12699 -6.91597 -5.74157 -3.02075 1.31601 1.93786 2.11804 2.60214 3.35205 3.44290 3.49321 3.50117 3.55084 4.00858 4.38570 4.44143 4.61234 4.67605 4.72641 4.83282 5.06750 5.14388 5.18932 5.37194 5.42654 5.47244 5.63079 5.71262 5.72243 5.79741 5.91924 5.96500 6.01755 6.14121 6.20323 6.26163 6.35612 6.51314 6.56411 6.62544 6.75588 6.82750 6.87263 7.02278 7.08025 7.17394 7.30686 7.72245 7.79372 8.40018 8.44555 9.55800 10.13719 10.48914 11.48344 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.003511 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.953851 B = 7972.596558 C = 9175.506285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.290 6.290 3 C 0.268 3.732 4 C -0.235 4.235 5 C 0.070 3.930 6 C 0.591 3.409 7 O -0.539 6.539 8 N -0.583 5.583 9 C 0.084 3.916 10 C -0.145 4.145 11 C 0.178 3.822 12 H 0.049 0.951 13 N -0.718 5.718 14 C -0.235 4.235 15 H 0.068 0.932 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.288 1.288 22 C -0.108 4.108 23 H 0.066 0.934 24 C -0.137 4.137 25 C 0.119 3.881 26 N -0.242 5.242 27 N -0.398 5.398 28 C 0.074 3.926 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -17.732 5.890 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.196 6.196 3 C 0.101 3.899 4 C -0.265 4.265 5 C -0.097 4.097 6 C 0.376 3.624 7 O -0.415 6.415 8 N -0.313 5.313 9 C -0.039 4.039 10 C -0.187 4.187 11 C 0.067 3.933 12 H 0.067 0.933 13 N -0.361 5.361 14 C -0.367 4.367 15 H 0.086 0.914 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.128 4.128 23 H 0.084 0.916 24 C -0.195 4.195 25 C -0.003 4.003 26 N -0.072 5.072 27 N -0.194 5.194 28 C -0.067 4.067 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.182 0.818 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.076 -17.121 5.775 21.194 hybrid contribution -0.507 0.337 -0.386 0.721 sum -11.583 -16.784 5.389 21.093 Atomic orbital electron populations 1.23636 0.78121 1.05214 1.01480 1.86294 1.21502 1.21811 1.89973 1.19590 0.91138 0.78950 1.00215 1.20299 0.92024 0.95520 1.18630 1.21950 0.92809 0.92982 1.01945 1.17018 0.85922 0.81873 0.77550 1.90764 1.33978 1.65059 1.51734 1.48006 1.09598 1.04663 1.69057 1.22665 0.86564 0.94528 1.00128 1.22480 1.01671 0.98232 0.96281 1.20237 0.90662 0.91022 0.91354 0.93272 1.42463 1.60300 1.18896 1.14405 1.19174 1.23786 0.94183 0.99525 0.91368 1.24694 1.00766 0.98708 0.96669 1.69639 1.43901 1.38538 1.06041 0.86319 0.79064 0.84392 0.76681 1.21418 1.21849 1.21444 1.21710 0.97220 0.96676 0.97220 0.91592 1.21665 0.95322 0.99354 1.03126 1.21725 0.84367 0.95257 0.98950 1.77601 0.95414 1.09242 1.24948 1.49473 1.07379 1.03239 1.59277 1.22549 0.75089 1.05690 1.03347 0.87362 0.91908 0.91712 0.81790 0.86076 0.90031 0.90985 0.93625 0.78093 0.93527 0.91012 0.92832 0.93726 0.89632 0.90357 0.90332 0.88737 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.37 101.05 0.95 1.00 16 2 O -0.29 -2.84 10.57 -19.02 -0.20 -3.04 16 3 C 0.27 3.27 7.78 -16.72 -0.13 3.14 16 4 C -0.23 -3.38 10.60 -39.46 -0.42 -3.80 16 5 C 0.07 1.13 6.87 -82.91 -0.57 0.56 16 6 C 0.59 10.78 7.70 -12.39 -0.10 10.68 16 7 O -0.54 -10.84 16.34 5.30 0.09 -10.75 16 8 N -0.58 -10.49 2.97 -173.93 -0.52 -11.01 16 9 C 0.08 1.51 6.05 -3.71 -0.02 1.49 16 10 C -0.15 -2.60 5.78 -26.61 -0.15 -2.75 16 11 C 0.18 3.45 2.53 -67.89 -0.17 3.27 16 12 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 13 N -0.72 -16.97 3.64 -53.39 -0.19 -17.16 16 14 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 18 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.11 -1.85 2.67 -90.50 -0.24 -2.10 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 C -0.14 -2.26 9.06 37.16 0.34 -1.92 16 25 C 0.12 2.13 5.41 -3.71 -0.02 2.11 16 26 N -0.24 -3.63 8.88 33.34 0.30 -3.34 16 27 N -0.40 -4.66 4.04 -68.18 -0.28 -4.93 16 28 C 0.07 0.49 9.63 59.85 0.58 1.07 16 29 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.23 6.53 -51.93 -0.34 -0.11 16 31 H 0.06 0.24 5.99 -51.93 -0.31 -0.07 16 32 H 0.16 2.22 8.06 -52.48 -0.42 1.80 16 33 H 0.12 2.05 3.68 -121.66 -0.45 1.61 16 34 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 0.74 8.14 -51.94 -0.42 0.32 16 37 H 0.38 9.73 5.93 -40.82 -0.24 9.49 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.07 1.36 7.53 -51.93 -0.39 0.97 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.50 7.03 -51.93 -0.36 1.13 16 43 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 44 H 0.08 0.41 7.72 -51.93 -0.40 0.01 16 45 H 0.09 0.36 4.51 -51.93 -0.23 0.12 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -32.83 361.81 -6.69 -39.52 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.83 Total: 9.13 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.21 Total: 5.92 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.03 Total: -63.22 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.83 -6.69 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.149 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds