Wall clock time and date at job start Tue Mar 31 2020 14:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35769 * 117.00124 * 2 1 4 4 C 1.35596 * 126.08670 * 175.35278 * 3 2 1 5 5 C 1.41058 * 107.80133 * 180.14466 * 4 3 2 6 6 C 1.47716 * 125.98424 * 179.86155 * 5 4 3 7 7 O 1.21573 * 119.99656 * 6.46492 * 6 5 4 8 8 N 1.34775 * 120.00324 * 186.46316 * 6 5 4 9 9 C 1.46924 * 120.62589 * 355.80707 * 8 6 5 10 10 C 1.53198 * 108.77420 * 126.36745 * 9 8 6 11 11 C 1.53036 * 109.31432 * 54.63396 * 10 9 8 12 12 H 1.08993 * 109.46385 * 178.61439 * 11 10 9 13 13 N 1.46496 * 109.46301 * 58.64954 * 11 10 9 14 14 C 1.36942 * 119.99698 * 85.00346 * 13 11 10 15 15 H 1.07997 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99949 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00116 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99998 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47184 * 59.99782 * 18 16 14 20 20 H 1.48491 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47003 * 300.00544 * 18 16 14 22 22 C 1.53045 * 109.53637 * 298.63452 * 11 10 9 23 23 H 1.09001 * 109.52091 * 301.39891 * 22 11 10 24 24 C 1.52998 * 109.49875 * 181.31788 * 22 11 10 25 25 C 1.46922 * 120.62911 * 175.77820 * 8 6 5 26 26 N 1.31868 * 108.03350 * 359.59809 * 5 4 3 27 27 N 1.35844 * 126.08551 * 355.05299 * 3 2 1 28 28 C 1.46505 * 125.94613 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47054 * 175.95035 * 1 2 3 30 30 H 1.08996 * 109.46835 * 295.95360 * 1 2 3 31 31 H 1.09001 * 109.47047 * 55.94855 * 1 2 3 32 32 H 1.08006 * 126.09965 * 0.02562 * 4 3 2 33 33 H 1.08993 * 109.59313 * 6.57453 * 9 8 6 34 34 H 1.09001 * 109.70319 * 246.21856 * 9 8 6 35 35 H 1.09007 * 109.49419 * 174.58084 * 10 9 8 36 36 H 1.08989 * 109.49647 * 294.67847 * 10 9 8 37 37 H 0.97000 * 120.00658 * 265.00515 * 13 11 10 38 38 H 0.96999 * 119.99926 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46989 * 300.15868 * 24 22 11 40 40 H 1.08998 * 109.47066 * 60.16071 * 24 22 11 41 41 H 1.09003 * 109.47017 * 180.15775 * 24 22 11 42 42 H 1.08991 * 109.59115 * 353.42068 * 25 8 6 43 43 H 1.08998 * 109.58358 * 113.85123 * 25 8 6 44 44 H 1.08998 * 109.46647 * 276.66200 * 28 27 3 45 45 H 1.08998 * 109.46833 * 36.66178 * 28 27 3 46 46 H 1.08999 * 109.46899 * 156.66541 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3811 1.4255 0.0888 5 6 3.5959 2.8192 0.0563 6 6 4.9061 3.4974 0.1302 7 8 5.9309 2.8437 0.1103 8 7 4.9655 4.8409 0.2198 9 6 3.7411 5.6503 0.1527 10 6 3.6872 6.5653 1.3803 11 6 4.9781 7.3835 1.4588 12 1 4.9319 8.0532 2.3174 13 7 5.1319 8.1714 0.2333 14 6 4.5202 9.3916 0.1226 15 1 3.9248 9.7732 0.9388 16 6 4.6664 10.1384 -1.0384 17 7 5.3924 9.6736 -2.0329 18 14 3.8314 11.8026 -1.1898 19 1 4.3264 12.7041 -0.1185 20 1 4.1411 12.3929 -2.5166 21 1 2.3622 11.6334 -1.0545 22 6 6.1735 6.4402 1.6117 23 1 6.0481 5.8361 2.5103 24 6 7.4602 7.2603 1.7231 25 6 6.2556 5.5237 0.3868 26 7 2.4228 3.4105 -0.0574 27 7 1.4341 2.4192 -0.0947 28 6 -0.0082 2.6468 -0.2143 29 1 -0.3633 -1.0251 -0.0726 30 1 -0.3633 0.4497 0.9240 31 1 -0.3633 0.5754 -0.8515 32 1 4.1443 0.6657 0.1717 33 1 2.8699 4.9954 0.1466 34 1 3.7497 6.2554 -0.7539 35 1 2.8343 7.2387 1.2948 36 1 3.5847 5.9601 2.2809 37 1 5.6670 7.8288 -0.4997 38 1 5.4942 10.1953 -2.8443 39 1 7.5846 7.8650 0.8248 40 1 7.4013 7.9121 2.5947 41 1 8.3116 6.5879 1.8291 42 1 7.0434 4.7852 0.5352 43 1 6.4718 6.1184 -0.5006 44 1 -0.3066 2.5454 -1.2577 45 1 -0.5430 1.9137 0.3895 46 1 -0.2478 3.6507 0.1362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036107347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:36 Heat of formation + Delta-G solvation = 32.785850 kcal Electronic energy + Delta-G solvation = -28365.480822 eV Core-core repulsion = 24486.393592 eV Total energy + Delta-G solvation = -3879.087230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.79175 -41.18128 -39.40532 -38.90446 -35.90918 -34.73272 -34.20663 -32.98014 -31.27106 -30.91416 -29.08416 -27.99623 -27.01063 -26.46958 -25.34676 -23.60790 -23.08612 -22.52230 -20.77222 -19.78649 -19.25056 -18.77220 -17.81742 -17.69878 -16.97453 -16.68921 -16.34624 -16.31281 -16.16727 -15.84314 -15.54890 -15.29343 -14.94944 -14.84340 -14.64130 -14.39840 -14.20681 -13.96667 -13.84972 -13.62654 -13.07402 -12.99033 -12.82033 -12.66518 -12.48958 -12.32104 -12.29561 -12.15250 -12.04686 -11.92262 -11.57278 -11.46266 -11.17368 -11.02335 -10.63054 -10.24274 -9.63176 -9.53674 -8.89891 -7.86146 -5.12535 0.17136 1.04459 1.06120 1.50198 1.52035 1.57921 1.73440 2.19828 2.22619 2.61586 3.03325 3.47272 3.62992 3.87537 3.90611 4.02959 4.08875 4.12670 4.14459 4.26952 4.30470 4.35467 4.41449 4.43931 4.51097 4.58542 4.63571 4.69506 4.73353 4.80002 4.89416 5.00695 5.01837 5.06369 5.15224 5.19271 5.28149 5.30297 5.46617 5.52023 5.61469 5.70535 6.17184 6.31236 6.35247 6.41913 6.98893 7.42433 8.19093 8.43096 9.37152 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.003511 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.953851 B = 7972.596558 C = 9175.506285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.298 6.298 3 C 0.286 3.714 4 C -0.258 4.258 5 C 0.048 3.952 6 C 0.591 3.409 7 O -0.565 6.565 8 N -0.584 5.584 9 C 0.094 3.906 10 C -0.136 4.136 11 C 0.172 3.828 12 H 0.050 0.950 13 N -0.724 5.724 14 C -0.227 4.227 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.966 3.034 19 H -0.281 1.281 20 H -0.302 1.302 21 H -0.279 1.279 22 C -0.098 4.098 23 H 0.087 0.913 24 C -0.130 4.130 25 C 0.122 3.878 26 N -0.262 5.262 27 N -0.385 5.385 28 C 0.058 3.942 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 -19.053 7.432 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.204 6.204 3 C 0.117 3.883 4 C -0.289 4.289 5 C -0.117 4.117 6 C 0.377 3.623 7 O -0.443 6.443 8 N -0.315 5.315 9 C -0.029 4.029 10 C -0.177 4.177 11 C 0.063 3.937 12 H 0.068 0.932 13 N -0.365 5.365 14 C -0.359 4.359 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.796 3.204 19 H -0.207 1.207 20 H -0.229 1.229 21 H -0.206 1.206 22 C -0.118 4.118 23 H 0.105 0.895 24 C -0.188 4.188 25 C 0.000 4.000 26 N -0.094 5.094 27 N -0.182 5.182 28 C -0.080 4.080 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.147 0.853 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.658 -18.457 7.368 24.114 hybrid contribution 0.117 0.572 -0.830 1.015 sum -13.541 -17.884 6.538 23.366 Atomic orbital electron populations 1.24094 0.75286 1.07530 1.03025 1.86332 1.24399 1.20152 1.89469 1.19446 0.90689 0.79899 0.98265 1.20366 0.93474 0.94851 1.20162 1.21616 0.92225 0.93685 1.04130 1.17317 0.86676 0.81652 0.76649 1.90731 1.35184 1.65489 1.52861 1.48025 1.09440 1.04850 1.69146 1.22549 0.87398 0.94460 0.98537 1.22350 1.00207 0.98000 0.97133 1.20454 0.92485 0.91285 0.89439 0.93227 1.42581 1.59827 1.18635 1.15486 1.19548 1.22419 0.94779 0.99171 0.90673 1.25416 1.02314 1.02146 0.96807 1.69809 1.46136 1.39759 1.06453 0.85321 0.78401 0.80647 0.76037 1.20739 1.22879 1.20567 1.21642 0.96505 0.96159 0.97497 0.89453 1.21595 0.95942 0.99420 1.01849 1.21635 0.84818 0.95179 0.98367 1.77297 0.95680 1.10764 1.25615 1.49713 1.08533 1.02450 1.57486 1.23094 0.72283 1.07192 1.05472 0.84879 0.90208 0.90196 0.81948 0.84431 0.93651 0.91689 0.91265 0.79370 0.94410 0.94123 0.92012 0.91426 0.89171 0.92822 0.88422 0.85282 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.37 113.37 1.06 1.03 16 2 O -0.30 -5.00 10.57 -90.97 -0.96 -5.97 16 3 C 0.29 6.42 7.78 83.46 0.65 7.07 16 4 C -0.26 -7.32 10.60 22.35 0.24 -7.09 16 5 C 0.05 1.56 6.87 42.34 0.29 1.85 16 6 C 0.59 21.86 7.70 86.75 0.67 22.53 16 7 O -0.56 -23.17 16.34 -3.94 -0.06 -23.24 16 8 N -0.58 -21.38 2.97 -822.47 -2.44 -23.82 16 9 C 0.09 3.40 6.05 86.36 0.52 3.93 16 10 C -0.14 -4.75 5.78 30.67 0.18 -4.57 16 11 C 0.17 6.61 2.53 45.02 0.11 6.73 16 12 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 13 N -0.72 -34.91 3.64 -322.82 -1.18 -36.09 16 14 C -0.23 -12.15 9.93 84.03 0.83 -11.31 16 15 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 17 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 18 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C -0.10 -3.30 2.67 -10.71 -0.03 -3.33 16 23 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 24 C -0.13 -4.23 9.06 71.98 0.65 -3.58 16 25 C 0.12 4.47 5.41 86.36 0.47 4.94 16 26 N -0.26 -7.62 8.88 -48.43 -0.43 -8.05 16 27 N -0.39 -8.13 4.04 -480.55 -1.94 -10.07 16 28 C 0.06 0.56 9.63 127.77 1.23 1.79 16 29 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.08 0.21 6.53 -2.39 -0.02 0.19 16 31 H 0.08 0.24 5.99 -2.39 -0.01 0.23 16 32 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.14 4.63 3.68 -93.61 -0.34 4.29 16 34 H 0.05 1.98 7.74 -2.39 -0.02 1.96 16 35 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.37 19.70 5.93 -92.71 -0.55 19.15 16 38 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.04 1.57 7.53 -2.39 -0.02 1.55 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 3.20 7.03 -2.39 -0.02 3.18 16 43 H 0.05 2.22 6.64 -2.39 -0.02 2.21 16 44 H 0.10 0.65 7.72 -2.39 -0.02 0.63 16 45 H 0.13 0.37 4.51 -2.39 -0.01 0.36 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.09 361.81 2.76 -70.33 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.13 Total: 31.61 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.34 Total: 16.22 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -5.71 Total: -136.80 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.03 Total: -29.20 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.09 2.76 -70.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.115 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds