Wall clock time and date at job start Tue Mar 31 2020 14:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35766 * 117.00374 * 2 1 4 4 C 1.35596 * 126.08498 * 178.04442 * 3 2 1 5 5 C 1.41060 * 107.79459 * 180.24608 * 4 3 2 6 6 C 1.47728 * 125.97868 * 179.75630 * 5 4 3 7 7 O 1.21572 * 120.00051 * 352.58029 * 6 5 4 8 8 N 1.34775 * 119.99799 * 172.57765 * 6 5 4 9 9 C 1.46923 * 120.63307 * 4.25117 * 8 6 5 10 10 C 1.53193 * 108.77261 * 233.58450 * 9 8 6 11 11 C 1.53038 * 109.31111 * 305.36031 * 10 9 8 12 12 H 1.08995 * 109.46353 * 301.34443 * 11 10 9 13 13 N 1.46508 * 109.45873 * 181.38734 * 11 10 9 14 14 C 1.36932 * 119.99721 * 85.00273 * 13 11 10 15 15 H 1.08000 * 120.00782 * 0.02562 * 14 13 11 16 16 C 1.38822 * 119.99946 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47143 * 60.00559 * 18 16 14 20 20 H 1.48502 * 109.46647 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47126 * 299.99610 * 18 16 14 22 22 C 1.53038 * 109.53726 * 61.37055 * 11 10 9 23 23 H 1.08994 * 109.50034 * 58.58531 * 22 11 10 24 24 C 1.53003 * 109.49939 * 178.64868 * 22 11 10 25 25 C 1.46927 * 120.62678 * 183.96599 * 8 6 5 26 26 N 1.31865 * 108.03964 * 359.59022 * 5 4 3 27 27 N 1.35849 * 126.08246 * 358.04759 * 3 2 1 28 28 C 1.46499 * 125.94831 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47760 * 191.12007 * 1 2 3 30 30 H 1.09004 * 109.47106 * 311.12040 * 1 2 3 31 31 H 1.09002 * 109.46952 * 71.11862 * 1 2 3 32 32 H 1.08000 * 126.09953 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.58710 * 353.36769 * 9 8 6 34 34 H 1.08994 * 109.59116 * 113.79677 * 9 8 6 35 35 H 1.09000 * 109.50068 * 65.31542 * 10 9 8 36 36 H 1.09000 * 109.50000 * 185.41363 * 10 9 8 37 37 H 0.96996 * 119.99855 * 264.99493 * 13 11 10 38 38 H 0.96998 * 119.99792 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47021 * 59.99694 * 24 22 11 40 40 H 1.08997 * 109.47662 * 179.97438 * 24 22 11 41 41 H 1.09002 * 109.47386 * 299.99840 * 24 22 11 42 42 H 1.09006 * 109.58707 * 246.20517 * 25 8 6 43 43 H 1.09003 * 109.58997 * 6.63041 * 25 8 6 44 44 H 1.08998 * 109.46947 * 82.15920 * 28 27 3 45 45 H 1.09001 * 109.46826 * 202.15765 * 28 27 3 46 46 H 1.08991 * 109.47019 * 322.16074 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3838 1.4240 0.0374 5 6 3.5975 2.8182 0.0281 6 6 4.9100 3.4953 0.0646 7 8 5.9233 2.8477 0.2427 8 7 4.9840 4.8310 -0.0997 9 6 3.7630 5.6388 -0.2231 10 6 3.8540 6.4776 -1.5018 11 6 5.1483 7.2939 -1.4806 12 1 5.1591 7.9347 -0.5989 13 7 5.2226 8.1224 -2.6866 14 6 4.6065 9.3449 -2.7165 15 1 4.0661 9.6987 -1.8509 16 6 4.6773 10.1302 -3.8590 17 7 5.3371 9.6998 -4.9134 18 14 3.8362 11.7976 -3.9000 19 1 4.4015 12.6634 -2.8342 20 1 4.0593 12.4320 -5.2240 21 1 2.3789 11.6226 -3.6749 22 6 6.3498 6.3472 -1.4376 23 1 6.3261 5.6894 -2.3064 24 6 7.6439 7.1634 -1.4504 25 6 6.2871 5.5076 -0.1526 26 7 2.4209 3.4114 -0.0226 27 7 1.4310 2.4207 -0.0374 28 6 -0.0151 2.6504 -0.0844 29 1 -0.3634 -1.0083 0.1982 30 1 -0.3633 0.6759 0.7742 31 1 -0.3633 0.3326 -0.9724 32 1 4.1493 0.6630 0.0729 33 1 2.8945 4.9824 -0.2777 34 1 3.6720 6.2977 0.6404 35 1 3.8536 5.8186 -2.3700 36 1 2.9994 7.1520 -1.5561 37 1 5.7083 7.8049 -3.4639 38 1 5.3863 10.2483 -5.7119 39 1 7.6678 7.8202 -0.5808 40 1 8.4994 6.4888 -1.4193 41 1 7.6864 7.7629 -2.3598 42 1 6.3977 6.1560 0.7167 43 1 7.0846 4.7646 -0.1606 44 1 -0.4262 2.5849 0.9230 45 1 -0.2124 3.6412 -0.4936 46 1 -0.4824 1.8961 -0.7173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036107348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:40 Heat of formation + Delta-G solvation = 51.727004 kcal Electronic energy + Delta-G solvation = -27934.835436 eV Core-core repulsion = 24056.569556 eV Total energy + Delta-G solvation = -3878.265880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89033 -39.90906 -38.50632 -37.48534 -34.59597 -33.76814 -32.74765 -31.39548 -30.42644 -29.26100 -28.27093 -27.12682 -25.98336 -25.04590 -23.27732 -22.08482 -21.77765 -21.50253 -19.78619 -19.08279 -17.87809 -17.08547 -17.02403 -16.77169 -15.98084 -15.53684 -15.28078 -15.17595 -14.88781 -14.62115 -14.16187 -13.99350 -13.76277 -13.60457 -13.52330 -13.29811 -13.16817 -12.84267 -12.39534 -12.23413 -11.96047 -11.75187 -11.66801 -11.51145 -11.12029 -10.92493 -10.83701 -10.69535 -10.40837 -10.21945 -10.18056 -9.86818 -9.63047 -9.54723 -9.39743 -8.83406 -8.65307 -8.38667 -6.91673 -5.74279 -3.02337 1.19953 1.83912 2.02137 2.52338 3.16726 3.41459 3.44213 3.48900 3.49785 3.91281 4.31551 4.36484 4.60099 4.61343 4.65104 4.76215 4.98753 5.06738 5.09594 5.30050 5.32576 5.41773 5.52798 5.55076 5.65582 5.70880 5.76736 5.85691 5.89494 6.03493 6.14563 6.17868 6.35408 6.46804 6.48667 6.50951 6.65120 6.76281 6.89312 6.98954 7.04752 7.13718 7.18652 7.58101 7.71233 8.22829 8.44254 9.55352 10.13907 10.49043 11.48333 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003134 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.341664 B = 8932.457010 C =10263.218083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.271 3.729 4 C -0.235 4.235 5 C 0.069 3.931 6 C 0.595 3.405 7 O -0.535 6.535 8 N -0.589 5.589 9 C 0.076 3.924 10 C -0.146 4.146 11 C 0.183 3.817 12 H 0.047 0.953 13 N -0.721 5.721 14 C -0.236 4.236 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.110 4.110 23 H 0.070 0.930 24 C -0.136 4.136 25 C 0.120 3.880 26 N -0.246 5.246 27 N -0.397 5.397 28 C 0.076 3.924 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -18.059 11.916 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.104 3.896 4 C -0.265 4.265 5 C -0.098 4.098 6 C 0.380 3.620 7 O -0.410 6.410 8 N -0.320 5.320 9 C -0.048 4.048 10 C -0.188 4.188 11 C 0.072 3.928 12 H 0.065 0.935 13 N -0.361 5.361 14 C -0.367 4.367 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.130 4.130 23 H 0.088 0.912 24 C -0.194 4.194 25 C -0.002 4.002 26 N -0.076 5.076 27 N -0.193 5.193 28 C -0.064 4.064 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.901 -17.440 11.986 23.804 hybrid contribution -0.538 0.300 -0.436 0.755 sum -11.439 -17.140 11.550 23.622 Atomic orbital electron populations 1.23651 0.77975 1.05219 1.01669 1.86299 1.21619 1.21718 1.89887 1.19600 0.91079 0.78922 1.00014 1.20306 0.91965 0.95507 1.18687 1.21902 0.92690 0.93036 1.02123 1.17018 0.85887 0.81707 0.77411 1.90777 1.34939 1.64970 1.50298 1.48034 1.08836 1.05602 1.69518 1.22821 0.87542 0.95498 0.98891 1.22622 1.01854 0.98599 0.95696 1.20233 0.90527 0.90447 0.91570 0.93462 1.42405 1.63504 1.17776 1.12418 1.19179 1.25729 0.93504 0.98283 0.91323 1.24721 1.01135 0.98762 0.96352 1.69649 1.46456 1.38091 1.03967 0.86302 0.79173 0.84313 0.76597 1.21335 1.21799 1.21397 1.21824 0.97130 0.97169 0.96847 0.91170 1.21658 0.95048 0.99299 1.03346 1.21884 0.84263 0.95909 0.98170 1.77479 0.95291 1.09583 1.25236 1.49430 1.07077 1.03138 1.59637 1.22502 0.74787 1.05750 1.03377 0.87409 0.91706 0.91779 0.81715 0.85467 0.91809 0.92455 0.90796 0.78251 0.93527 0.93056 0.93775 0.90752 0.91256 0.89181 0.90329 0.88063 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.46 101.05 0.96 1.00 16 2 O -0.29 -2.67 10.57 -19.01 -0.20 -2.87 16 3 C 0.27 3.08 7.77 -16.72 -0.13 2.96 16 4 C -0.23 -3.16 10.60 -39.46 -0.42 -3.58 16 5 C 0.07 1.03 6.87 -82.91 -0.57 0.46 16 6 C 0.59 9.86 7.70 -12.38 -0.10 9.76 16 7 O -0.53 -9.94 16.34 5.30 0.09 -9.85 16 8 N -0.59 -9.32 2.97 -173.66 -0.52 -9.84 16 9 C 0.08 1.16 6.31 -3.71 -0.02 1.14 16 10 C -0.15 -2.64 5.66 -26.61 -0.15 -2.79 16 11 C 0.18 3.58 2.19 -67.89 -0.15 3.43 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -17.63 4.41 -53.38 -0.24 -17.87 16 14 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 18 Si 0.90 22.21 29.55 -169.99 -5.02 17.18 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.11 -1.89 2.47 -90.27 -0.22 -2.11 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 24 C -0.14 -2.26 9.03 37.16 0.34 -1.93 16 25 C 0.12 1.85 5.74 -3.48 -0.02 1.83 16 26 N -0.25 -3.34 8.89 33.34 0.30 -3.05 16 27 N -0.40 -4.25 4.04 -68.19 -0.28 -4.53 16 28 C 0.08 0.44 9.56 59.85 0.57 1.01 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 5.80 -51.93 -0.30 -0.10 16 31 H 0.06 0.20 6.46 -51.93 -0.34 -0.13 16 32 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.13 1.88 3.69 -120.94 -0.45 1.44 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.38 10.12 7.50 -40.82 -0.31 9.81 16 38 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.45 7.36 -51.93 -0.38 1.06 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.40 7.03 -51.93 -0.36 1.03 16 44 H 0.08 0.30 7.46 -51.93 -0.39 -0.08 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.31 4.86 -51.93 -0.25 0.06 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -33.59 365.62 -6.76 -40.35 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.97 Total: 8.04 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.16 Total: 4.16 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.00 Total: -62.52 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.11 Total: -12.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.59 -6.76 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.077 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds