Wall clock time and date at job start Tue Mar 31 2020 14:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35766 * 117.00374 * 2 1 4 4 C 1.35596 * 126.08498 * 178.04442 * 3 2 1 5 5 C 1.41060 * 107.79459 * 180.24608 * 4 3 2 6 6 C 1.47728 * 125.97868 * 179.75630 * 5 4 3 7 7 O 1.21572 * 120.00051 * 352.58029 * 6 5 4 8 8 N 1.34775 * 119.99799 * 172.57765 * 6 5 4 9 9 C 1.46923 * 120.63307 * 4.25117 * 8 6 5 10 10 C 1.53193 * 108.77261 * 233.58450 * 9 8 6 11 11 C 1.53038 * 109.31111 * 305.36031 * 10 9 8 12 12 H 1.08995 * 109.46353 * 301.34443 * 11 10 9 13 13 N 1.46508 * 109.45873 * 181.38734 * 11 10 9 14 14 C 1.36932 * 119.99721 * 85.00273 * 13 11 10 15 15 H 1.08000 * 120.00782 * 0.02562 * 14 13 11 16 16 C 1.38822 * 119.99946 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47143 * 60.00559 * 18 16 14 20 20 H 1.48502 * 109.46647 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47126 * 299.99610 * 18 16 14 22 22 C 1.53038 * 109.53726 * 61.37055 * 11 10 9 23 23 H 1.08994 * 109.50034 * 58.58531 * 22 11 10 24 24 C 1.53003 * 109.49939 * 178.64868 * 22 11 10 25 25 C 1.46927 * 120.62678 * 183.96599 * 8 6 5 26 26 N 1.31865 * 108.03964 * 359.59022 * 5 4 3 27 27 N 1.35849 * 126.08246 * 358.04759 * 3 2 1 28 28 C 1.46499 * 125.94831 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47760 * 191.12007 * 1 2 3 30 30 H 1.09004 * 109.47106 * 311.12040 * 1 2 3 31 31 H 1.09002 * 109.46952 * 71.11862 * 1 2 3 32 32 H 1.08000 * 126.09953 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.58710 * 353.36769 * 9 8 6 34 34 H 1.08994 * 109.59116 * 113.79677 * 9 8 6 35 35 H 1.09000 * 109.50068 * 65.31542 * 10 9 8 36 36 H 1.09000 * 109.50000 * 185.41363 * 10 9 8 37 37 H 0.96996 * 119.99855 * 264.99493 * 13 11 10 38 38 H 0.96998 * 119.99792 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47021 * 59.99694 * 24 22 11 40 40 H 1.08997 * 109.47662 * 179.97438 * 24 22 11 41 41 H 1.09002 * 109.47386 * 299.99840 * 24 22 11 42 42 H 1.09006 * 109.58707 * 246.20517 * 25 8 6 43 43 H 1.09003 * 109.58997 * 6.63041 * 25 8 6 44 44 H 1.08998 * 109.46947 * 82.15920 * 28 27 3 45 45 H 1.09001 * 109.46826 * 202.15765 * 28 27 3 46 46 H 1.08991 * 109.47019 * 322.16074 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3838 1.4240 0.0374 5 6 3.5975 2.8182 0.0281 6 6 4.9100 3.4953 0.0646 7 8 5.9233 2.8477 0.2427 8 7 4.9840 4.8310 -0.0997 9 6 3.7630 5.6388 -0.2231 10 6 3.8540 6.4776 -1.5018 11 6 5.1483 7.2939 -1.4806 12 1 5.1591 7.9347 -0.5989 13 7 5.2226 8.1224 -2.6866 14 6 4.6065 9.3449 -2.7165 15 1 4.0661 9.6987 -1.8509 16 6 4.6773 10.1302 -3.8590 17 7 5.3371 9.6998 -4.9134 18 14 3.8362 11.7976 -3.9000 19 1 4.4015 12.6634 -2.8342 20 1 4.0593 12.4320 -5.2240 21 1 2.3789 11.6226 -3.6749 22 6 6.3498 6.3472 -1.4376 23 1 6.3261 5.6894 -2.3064 24 6 7.6439 7.1634 -1.4504 25 6 6.2871 5.5076 -0.1526 26 7 2.4209 3.4114 -0.0226 27 7 1.4310 2.4207 -0.0374 28 6 -0.0151 2.6504 -0.0844 29 1 -0.3634 -1.0083 0.1982 30 1 -0.3633 0.6759 0.7742 31 1 -0.3633 0.3326 -0.9724 32 1 4.1493 0.6630 0.0729 33 1 2.8945 4.9824 -0.2777 34 1 3.6720 6.2977 0.6404 35 1 3.8536 5.8186 -2.3700 36 1 2.9994 7.1520 -1.5561 37 1 5.7083 7.8049 -3.4639 38 1 5.3863 10.2483 -5.7119 39 1 7.6678 7.8202 -0.5808 40 1 8.4994 6.4888 -1.4193 41 1 7.6864 7.7629 -2.3598 42 1 6.3977 6.1560 0.7167 43 1 7.0846 4.7646 -0.1606 44 1 -0.4262 2.5849 0.9230 45 1 -0.2124 3.6412 -0.4936 46 1 -0.4824 1.8961 -0.7173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036107348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:39 Heat of formation + Delta-G solvation = 27.946960 kcal Electronic energy + Delta-G solvation = -27935.866616 eV Core-core repulsion = 24056.569556 eV Total energy + Delta-G solvation = -3879.297060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.79473 -41.13366 -39.35602 -38.86458 -36.21549 -34.74456 -34.19727 -33.03951 -31.31395 -31.00332 -29.06054 -28.00698 -27.01851 -26.59303 -24.84717 -23.31416 -23.08696 -22.53243 -21.16811 -20.27161 -19.07955 -18.80019 -17.85832 -17.73540 -16.99499 -16.73576 -16.40386 -16.31518 -16.23936 -15.66717 -15.48852 -15.29654 -15.05339 -14.85743 -14.61288 -14.35582 -14.12779 -13.94126 -13.81117 -13.63113 -13.32293 -12.97835 -12.81998 -12.75325 -12.46729 -12.35416 -12.27829 -12.18620 -12.09510 -11.83345 -11.72570 -11.48606 -11.15442 -11.10540 -10.67807 -10.24210 -9.70166 -9.54391 -8.94067 -7.89149 -5.16753 0.16369 1.03112 1.06085 1.49095 1.51659 1.57488 1.71184 2.16250 2.23627 2.59520 3.01258 3.44002 3.62017 3.80392 3.85939 4.00254 4.05586 4.09258 4.17907 4.26976 4.31138 4.36305 4.38269 4.40420 4.49394 4.55166 4.62025 4.73472 4.75012 4.79882 4.84651 4.90626 4.99730 5.01296 5.05224 5.17299 5.27782 5.37684 5.47522 5.53201 5.57170 5.69641 6.13720 6.30136 6.32102 6.37806 6.97253 7.38380 8.14426 8.38578 9.34345 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003134 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.341664 B = 8932.457010 C =10263.218083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.299 6.299 3 C 0.285 3.715 4 C -0.261 4.261 5 C 0.048 3.952 6 C 0.593 3.407 7 O -0.562 6.562 8 N -0.590 5.590 9 C 0.086 3.914 10 C -0.135 4.135 11 C 0.179 3.821 12 H 0.049 0.951 13 N -0.731 5.731 14 C -0.231 4.231 15 H 0.077 0.923 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.969 3.031 19 H -0.279 1.279 20 H -0.300 1.300 21 H -0.278 1.278 22 C -0.100 4.100 23 H 0.053 0.947 24 C -0.129 4.129 25 C 0.126 3.874 26 N -0.260 5.260 27 N -0.386 5.386 28 C 0.061 3.939 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 -18.767 13.685 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.205 6.205 3 C 0.116 3.884 4 C -0.291 4.291 5 C -0.117 4.117 6 C 0.380 3.620 7 O -0.439 6.439 8 N -0.321 5.321 9 C -0.037 4.037 10 C -0.176 4.176 11 C 0.071 3.929 12 H 0.067 0.933 13 N -0.370 5.370 14 C -0.363 4.363 15 H 0.095 0.905 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.799 3.201 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.204 1.204 22 C -0.120 4.120 23 H 0.071 0.929 24 C -0.186 4.186 25 C 0.003 3.997 26 N -0.091 5.091 27 N -0.183 5.183 28 C -0.077 4.077 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.202 0.798 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.270 -18.164 13.807 26.394 hybrid contribution 0.035 0.369 -0.941 1.012 sum -13.235 -17.795 12.866 25.639 Atomic orbital electron populations 1.24090 0.75239 1.07388 1.03188 1.86327 1.24436 1.20297 1.89439 1.19475 0.90696 0.79867 0.98316 1.20383 0.93329 0.95075 1.20334 1.21644 0.92343 0.93596 1.04130 1.17273 0.86408 0.81659 0.76692 1.90747 1.36099 1.65468 1.51601 1.48080 1.09029 1.05647 1.69332 1.22780 0.87869 0.95407 0.97668 1.22409 1.00328 0.98146 0.96669 1.20442 0.92355 0.90556 0.89589 0.93263 1.42578 1.63145 1.17820 1.13432 1.19568 1.24447 0.94118 0.98146 0.90513 1.25503 1.02678 1.02414 0.96336 1.69819 1.48636 1.39351 1.04478 0.85270 0.78492 0.80240 0.76123 1.20482 1.22674 1.20424 1.21693 0.96374 0.96583 0.97374 0.92882 1.21570 0.95698 0.99389 1.01992 1.21841 0.84414 0.95835 0.97584 1.77233 0.95413 1.10805 1.25659 1.49696 1.08290 1.02360 1.57915 1.23026 0.71998 1.06969 1.05754 0.85116 0.90062 0.90288 0.82085 0.84451 0.90164 0.94306 0.91679 0.79799 0.94281 0.92147 0.91447 0.94010 0.89269 0.89066 0.87750 0.87851 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.46 113.37 1.07 1.04 16 2 O -0.30 -4.81 10.57 -90.93 -0.96 -5.77 16 3 C 0.29 6.03 7.77 83.46 0.65 6.68 16 4 C -0.26 -6.98 10.60 22.35 0.24 -6.74 16 5 C 0.05 1.41 6.87 42.34 0.29 1.70 16 6 C 0.59 19.66 7.70 86.75 0.67 20.33 16 7 O -0.56 -21.11 16.34 -3.94 -0.06 -21.17 16 8 N -0.59 -18.31 2.97 -821.60 -2.44 -20.75 16 9 C 0.09 2.53 6.31 86.36 0.54 3.07 16 10 C -0.13 -4.82 5.66 30.67 0.17 -4.64 16 11 C 0.18 7.01 2.19 45.02 0.10 7.11 16 12 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 13 N -0.73 -36.40 4.41 -322.81 -1.42 -37.83 16 14 C -0.23 -12.56 9.93 84.04 0.83 -11.73 16 15 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 18 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.10 -3.44 2.47 -10.57 -0.03 -3.47 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 24 C -0.13 -4.26 9.03 71.98 0.65 -3.61 16 25 C 0.13 3.75 5.74 86.51 0.50 4.25 16 26 N -0.26 -6.74 8.89 -48.42 -0.43 -7.17 16 27 N -0.39 -7.41 4.04 -480.57 -1.94 -9.35 16 28 C 0.06 0.49 9.56 127.77 1.22 1.71 16 29 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.08 0.17 5.80 -2.38 -0.01 0.15 16 31 H 0.08 0.18 6.46 -2.39 -0.02 0.17 16 32 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.14 3.90 3.69 -92.66 -0.34 3.56 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.37 20.26 7.50 -92.71 -0.70 19.56 16 38 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.65 7.36 -2.39 -0.02 1.64 16 42 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.09 2.76 7.03 -2.39 -0.02 2.74 16 44 H 0.10 0.36 7.46 -2.39 -0.02 0.34 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.12 0.31 4.86 -2.39 -0.01 0.30 16 Total: -1.00 -74.23 365.62 2.41 -71.82 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.02 Total: 29.93 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 7.38 Total: 11.74 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -5.95 Total: -134.49 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.03 Total: -26.95 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.23 2.41 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.770 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds