Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35767 * 116.99776 * 2 1 4 4 C 1.35591 * 126.08132 * 182.70180 * 3 2 1 5 5 C 1.41062 * 107.80060 * 179.97438 * 4 3 2 6 6 C 1.47721 * 125.98386 * 179.97438 * 5 4 3 7 7 O 1.21572 * 120.00016 * 353.18184 * 6 5 4 8 8 N 1.34777 * 119.99851 * 173.17980 * 6 5 4 9 9 C 1.46927 * 120.63138 * 354.29203 * 8 6 5 10 10 C 1.53194 * 108.77596 * 233.62923 * 9 8 6 11 11 C 1.53032 * 109.31277 * 305.36960 * 10 9 8 12 12 H 1.09001 * 109.46049 * 181.38649 * 11 10 9 13 13 N 1.46504 * 109.45886 * 301.34373 * 11 10 9 14 14 C 1.36945 * 119.99785 * 274.99839 * 13 11 10 15 15 H 1.08002 * 119.99602 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99577 * 180.02562 * 14 13 11 17 17 N 1.31611 * 120.00441 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99548 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46973 * 120.00006 * 18 16 14 21 21 H 1.48496 * 109.46883 * 239.99718 * 18 16 14 22 22 C 1.53043 * 109.54163 * 61.36500 * 11 10 9 23 23 H 1.08993 * 109.50059 * 58.58418 * 22 11 10 24 24 C 1.52998 * 109.49708 * 178.68458 * 22 11 10 25 25 C 1.46928 * 120.62711 * 174.31708 * 8 6 5 26 26 N 1.31863 * 108.03404 * 0.23156 * 5 4 3 27 27 N 1.35841 * 126.08627 * 2.69931 * 3 2 1 28 28 C 1.46500 * 125.94996 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46997 * 310.06659 * 1 2 3 30 30 H 1.09001 * 109.47111 * 70.06313 * 1 2 3 31 31 H 1.08994 * 109.47103 * 190.06312 * 1 2 3 32 32 H 1.08002 * 126.10393 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.58335 * 113.84107 * 9 8 6 34 34 H 1.08999 * 109.58736 * 353.42123 * 9 8 6 35 35 H 1.09000 * 109.49455 * 185.41448 * 10 9 8 36 36 H 1.08997 * 109.51880 * 65.33744 * 10 9 8 37 37 H 0.96999 * 120.00222 * 95.00785 * 13 11 10 38 38 H 0.96997 * 120.00278 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47478 * 59.99767 * 24 22 11 40 40 H 1.09005 * 109.47249 * 179.97438 * 24 22 11 41 41 H 1.09002 * 109.47405 * 299.99350 * 24 22 11 42 42 H 1.09001 * 109.58578 * 246.15645 * 25 8 6 43 43 H 1.09001 * 109.58835 * 6.43845 * 25 8 6 44 44 H 1.09005 * 109.46770 * 80.88417 * 28 27 3 45 45 H 1.09001 * 109.47289 * 200.87892 * 28 27 3 46 46 H 1.08995 * 109.47021 * 320.88409 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3832 1.4243 -0.0517 5 6 3.5974 2.8184 -0.0314 6 6 4.9096 3.4956 -0.0717 7 8 5.9329 2.8429 -0.0028 8 7 4.9724 4.8372 -0.1851 9 6 3.7524 5.6286 -0.3947 10 6 3.9437 6.5111 -1.6322 11 6 5.2146 7.3472 -1.4661 12 1 5.3399 7.9941 -2.3344 13 7 5.1041 8.1685 -0.2579 14 6 4.4703 9.3813 -0.3102 15 1 4.0517 9.7321 -1.2419 16 6 4.3660 10.1597 0.8345 17 7 4.8758 9.7319 1.9699 18 14 3.5009 11.8138 0.7634 19 1 3.0193 12.0616 -0.6194 20 1 2.3460 11.8089 1.6969 21 1 4.4502 12.8861 1.1560 22 6 6.4254 6.4193 -1.3427 23 1 6.4939 5.7906 -2.2304 24 6 7.6990 7.2565 -1.2096 25 6 6.2623 5.5358 -0.1019 26 7 2.4214 3.4112 0.0355 27 7 1.4315 2.4204 0.0517 28 6 -0.0139 2.6498 0.1168 29 1 -0.3633 0.6615 0.7865 30 1 -0.3633 0.3504 -0.9661 31 1 -0.3633 -1.0118 0.1796 32 1 4.1484 0.6637 -0.1005 33 1 3.5701 6.2567 0.4773 34 1 2.9054 4.9603 -0.5497 35 1 3.0847 7.1728 -1.7434 36 1 4.0353 5.8819 -2.5175 37 1 5.4799 7.8533 0.5789 38 1 4.8032 10.2760 2.7697 39 1 7.6302 7.8838 -0.3209 40 1 8.5610 6.5952 -1.1213 41 1 7.8132 7.8870 -2.0914 42 1 6.2846 6.1564 0.7940 43 1 7.0711 4.8063 -0.0612 44 1 -0.3558 2.5240 1.1442 45 1 -0.2366 3.6627 -0.2187 46 1 -0.5248 1.9333 -0.5265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036107350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = 53.274799 kcal Electronic energy + Delta-G solvation = -28351.623034 eV Core-core repulsion = 24473.424271 eV Total energy + Delta-G solvation = -3878.198763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78552 -39.82330 -38.45523 -37.47810 -34.26500 -33.64590 -32.73387 -31.32340 -30.31959 -29.10584 -28.20014 -27.03140 -25.89100 -25.01319 -23.47669 -22.38291 -21.76643 -21.44265 -19.50360 -18.45020 -17.57532 -17.30230 -16.97334 -16.57602 -15.87375 -15.40987 -15.17493 -15.09406 -14.72469 -14.36253 -14.25986 -14.04097 -13.90068 -13.48260 -13.38308 -13.18991 -13.08095 -12.80747 -12.47401 -12.19721 -11.74600 -11.69423 -11.46292 -11.33582 -11.15953 -10.92197 -10.81503 -10.70646 -10.41429 -10.12663 -10.07823 -9.77095 -9.65218 -9.48532 -9.28101 -8.87108 -8.53259 -8.13064 -6.92011 -5.74969 -3.02785 1.32309 1.95440 2.12377 2.61057 3.35109 3.43176 3.49272 3.51250 3.54310 4.03376 4.37706 4.47329 4.60696 4.68265 4.72139 4.83841 5.07525 5.15166 5.19958 5.37839 5.42024 5.46769 5.64759 5.70626 5.72093 5.80588 5.91018 5.95491 6.01338 6.14380 6.20414 6.26021 6.35211 6.50596 6.54950 6.60917 6.74211 6.82162 6.86614 7.02024 7.08028 7.14533 7.28634 7.72792 7.78374 8.39675 8.43665 9.55193 10.12996 10.48210 11.47639 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.003566 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.791266 B = 7850.819653 C = 9166.877352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.290 6.290 3 C 0.267 3.733 4 C -0.235 4.235 5 C 0.067 3.933 6 C 0.593 3.407 7 O -0.539 6.539 8 N -0.584 5.584 9 C 0.094 3.906 10 C -0.148 4.148 11 C 0.178 3.822 12 H 0.050 0.950 13 N -0.718 5.718 14 C -0.234 4.234 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.108 4.108 23 H 0.066 0.934 24 C -0.137 4.137 25 C 0.119 3.881 26 N -0.239 5.239 27 N -0.399 5.399 28 C 0.078 3.922 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -17.796 -5.569 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.196 6.196 3 C 0.101 3.899 4 C -0.265 4.265 5 C -0.100 4.100 6 C 0.377 3.623 7 O -0.415 6.415 8 N -0.314 5.314 9 C -0.029 4.029 10 C -0.189 4.189 11 C 0.067 3.933 12 H 0.068 0.932 13 N -0.361 5.361 14 C -0.365 4.365 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.735 3.265 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.128 4.128 23 H 0.085 0.915 24 C -0.195 4.195 25 C -0.003 4.003 26 N -0.070 5.070 27 N -0.195 5.195 28 C -0.063 4.063 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.182 0.818 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.645 -17.179 -5.507 20.457 hybrid contribution -0.598 0.301 0.311 0.738 sum -10.243 -16.878 -5.195 20.415 Atomic orbital electron populations 1.23659 0.78089 1.05206 1.01651 1.86292 1.21540 1.21789 1.89966 1.19588 0.91087 0.78925 1.00333 1.20302 0.91920 0.95546 1.18743 1.21933 0.92848 0.92940 1.02243 1.16997 0.85901 0.81846 0.77508 1.90761 1.34154 1.64895 1.51736 1.48005 1.09796 1.04956 1.68672 1.22455 0.85943 0.94711 0.99777 1.22510 1.01945 0.98385 0.96037 1.20235 0.90592 0.90734 0.91691 0.93231 1.42483 1.68051 1.18905 1.06646 1.19264 1.28069 0.94271 0.94891 0.91255 1.24693 1.01703 0.98747 0.95748 1.69656 1.50674 1.38191 0.99543 0.86178 0.78909 0.84381 0.77071 1.20679 1.22064 1.22039 1.21700 0.96939 0.96772 0.97383 0.91527 1.21665 0.95281 0.99341 1.03182 1.21730 0.84454 0.95157 0.98979 1.77806 0.95259 1.09473 1.24422 1.49402 1.07139 1.03156 1.59757 1.22479 0.74887 1.05667 1.03244 0.91556 0.91962 0.87476 0.81808 0.89933 0.87088 0.90913 0.93580 0.78101 0.93644 0.91042 0.93719 0.92828 0.90375 0.89574 0.90319 0.88090 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.44 101.05 0.95 1.00 16 2 O -0.29 -2.88 10.57 -19.01 -0.20 -3.08 16 3 C 0.27 3.29 7.78 -16.72 -0.13 3.16 16 4 C -0.24 -3.40 10.60 -39.46 -0.42 -3.82 16 5 C 0.07 1.09 6.81 -82.91 -0.56 0.53 16 6 C 0.59 10.78 7.69 -12.39 -0.10 10.68 16 7 O -0.54 -10.80 16.32 5.30 0.09 -10.71 16 8 N -0.58 -10.47 2.97 -173.92 -0.52 -10.99 16 9 C 0.09 1.68 5.87 -3.71 -0.02 1.66 16 10 C -0.15 -2.63 5.78 -26.61 -0.15 -2.78 16 11 C 0.18 3.44 2.53 -67.89 -0.17 3.27 16 12 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 13 N -0.72 -16.90 3.64 -53.38 -0.19 -17.10 16 14 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.36 5.50 -17.44 -0.10 -0.46 16 17 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 18 Si 0.90 21.98 29.55 -169.99 -5.02 16.95 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C -0.11 -1.85 2.67 -90.50 -0.24 -2.09 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 24 C -0.14 -2.26 9.05 37.16 0.34 -1.92 16 25 C 0.12 2.12 5.43 -3.71 -0.02 2.10 16 26 N -0.24 -3.63 9.00 33.34 0.30 -3.33 16 27 N -0.40 -4.72 4.04 -68.19 -0.28 -5.00 16 28 C 0.08 0.53 9.54 59.85 0.57 1.10 16 29 H 0.07 0.26 5.53 -51.93 -0.29 -0.02 16 30 H 0.06 0.23 6.74 -51.93 -0.35 -0.12 16 31 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.08 1.72 7.74 -51.93 -0.40 1.32 16 34 H 0.11 1.88 4.08 -82.28 -0.34 1.54 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.38 9.68 5.93 -40.82 -0.24 9.44 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.52 6.64 -51.93 -0.34 1.17 16 43 H 0.09 1.51 6.99 -51.93 -0.36 1.14 16 44 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.36 4.88 -51.93 -0.25 0.11 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -32.75 361.92 -6.55 -39.31 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.71 Total: 9.06 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.20 Total: 6.10 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.04 Total: -63.08 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.75 -6.55 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.580 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds