Wall clock time and date at job start Tue Mar 31 2020 14:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35767 * 116.99776 * 2 1 4 4 C 1.35591 * 126.08132 * 182.70180 * 3 2 1 5 5 C 1.41062 * 107.80060 * 179.97438 * 4 3 2 6 6 C 1.47721 * 125.98386 * 179.97438 * 5 4 3 7 7 O 1.21572 * 120.00016 * 353.18184 * 6 5 4 8 8 N 1.34777 * 119.99851 * 173.17980 * 6 5 4 9 9 C 1.46927 * 120.63138 * 354.29203 * 8 6 5 10 10 C 1.53194 * 108.77596 * 233.62923 * 9 8 6 11 11 C 1.53032 * 109.31277 * 305.36960 * 10 9 8 12 12 H 1.09001 * 109.46049 * 181.38649 * 11 10 9 13 13 N 1.46504 * 109.45886 * 301.34373 * 11 10 9 14 14 C 1.36945 * 119.99785 * 274.99839 * 13 11 10 15 15 H 1.08002 * 119.99602 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99577 * 180.02562 * 14 13 11 17 17 N 1.31611 * 120.00441 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99548 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46973 * 120.00006 * 18 16 14 21 21 H 1.48496 * 109.46883 * 239.99718 * 18 16 14 22 22 C 1.53043 * 109.54163 * 61.36500 * 11 10 9 23 23 H 1.08993 * 109.50059 * 58.58418 * 22 11 10 24 24 C 1.52998 * 109.49708 * 178.68458 * 22 11 10 25 25 C 1.46928 * 120.62711 * 174.31708 * 8 6 5 26 26 N 1.31863 * 108.03404 * 0.23156 * 5 4 3 27 27 N 1.35841 * 126.08627 * 2.69931 * 3 2 1 28 28 C 1.46500 * 125.94996 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.46997 * 310.06659 * 1 2 3 30 30 H 1.09001 * 109.47111 * 70.06313 * 1 2 3 31 31 H 1.08994 * 109.47103 * 190.06312 * 1 2 3 32 32 H 1.08002 * 126.10393 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.58335 * 113.84107 * 9 8 6 34 34 H 1.08999 * 109.58736 * 353.42123 * 9 8 6 35 35 H 1.09000 * 109.49455 * 185.41448 * 10 9 8 36 36 H 1.08997 * 109.51880 * 65.33744 * 10 9 8 37 37 H 0.96999 * 120.00222 * 95.00785 * 13 11 10 38 38 H 0.96997 * 120.00278 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47478 * 59.99767 * 24 22 11 40 40 H 1.09005 * 109.47249 * 179.97438 * 24 22 11 41 41 H 1.09002 * 109.47405 * 299.99350 * 24 22 11 42 42 H 1.09001 * 109.58578 * 246.15645 * 25 8 6 43 43 H 1.09001 * 109.58835 * 6.43845 * 25 8 6 44 44 H 1.09005 * 109.46770 * 80.88417 * 28 27 3 45 45 H 1.09001 * 109.47289 * 200.87892 * 28 27 3 46 46 H 1.08995 * 109.47021 * 320.88409 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3832 1.4243 -0.0517 5 6 3.5974 2.8184 -0.0314 6 6 4.9096 3.4956 -0.0717 7 8 5.9329 2.8429 -0.0028 8 7 4.9724 4.8372 -0.1851 9 6 3.7524 5.6286 -0.3947 10 6 3.9437 6.5111 -1.6322 11 6 5.2146 7.3472 -1.4661 12 1 5.3399 7.9941 -2.3344 13 7 5.1041 8.1685 -0.2579 14 6 4.4703 9.3813 -0.3102 15 1 4.0517 9.7321 -1.2419 16 6 4.3660 10.1597 0.8345 17 7 4.8758 9.7319 1.9699 18 14 3.5009 11.8138 0.7634 19 1 3.0193 12.0616 -0.6194 20 1 2.3460 11.8089 1.6969 21 1 4.4502 12.8861 1.1560 22 6 6.4254 6.4193 -1.3427 23 1 6.4939 5.7906 -2.2304 24 6 7.6990 7.2565 -1.2096 25 6 6.2623 5.5358 -0.1019 26 7 2.4214 3.4112 0.0355 27 7 1.4315 2.4204 0.0517 28 6 -0.0139 2.6498 0.1168 29 1 -0.3633 0.6615 0.7865 30 1 -0.3633 0.3504 -0.9661 31 1 -0.3633 -1.0118 0.1796 32 1 4.1484 0.6637 -0.1005 33 1 3.5701 6.2567 0.4773 34 1 2.9054 4.9603 -0.5497 35 1 3.0847 7.1728 -1.7434 36 1 4.0353 5.8819 -2.5175 37 1 5.4799 7.8533 0.5789 38 1 4.8032 10.2760 2.7697 39 1 7.6302 7.8838 -0.3209 40 1 8.5610 6.5952 -1.1213 41 1 7.8132 7.8870 -2.0914 42 1 6.2846 6.1564 0.7940 43 1 7.0711 4.8063 -0.0612 44 1 -0.3558 2.5240 1.1442 45 1 -0.2366 3.6627 -0.2187 46 1 -0.5248 1.9333 -0.5265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036107350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:42 Heat of formation + Delta-G solvation = 30.575225 kcal Electronic energy + Delta-G solvation = -28352.607362 eV Core-core repulsion = 24473.424271 eV Total energy + Delta-G solvation = -3879.183090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.78867 -41.18317 -39.40520 -38.89588 -35.90646 -34.73390 -34.21198 -32.97992 -31.25997 -30.91624 -29.08261 -27.98389 -27.01508 -26.46430 -25.34375 -23.61216 -23.08684 -22.50794 -20.77280 -19.78712 -19.24980 -18.76286 -17.82106 -17.69330 -16.96866 -16.69444 -16.34512 -16.28205 -16.15005 -15.84252 -15.57074 -15.29159 -14.89775 -14.85455 -14.63240 -14.41659 -14.21516 -13.95680 -13.89473 -13.61559 -13.04527 -12.97576 -12.87038 -12.68078 -12.48257 -12.33047 -12.29548 -12.06260 -12.03096 -11.91677 -11.57651 -11.49670 -11.18256 -11.05908 -10.71440 -10.24030 -9.63046 -9.51925 -8.89751 -7.86280 -5.12527 0.17275 1.04558 1.07363 1.49795 1.50790 1.59825 1.73494 2.19284 2.22158 2.61419 3.04068 3.47536 3.64172 3.88704 3.90538 4.00713 4.09843 4.12317 4.14513 4.26794 4.29882 4.35159 4.40653 4.44051 4.50777 4.58512 4.63734 4.69912 4.72866 4.79241 4.89374 5.00776 5.01772 5.05632 5.15455 5.18712 5.28215 5.30783 5.43870 5.51387 5.61929 5.68385 6.15913 6.30115 6.35375 6.40752 6.98779 7.42643 8.18912 8.43033 9.37335 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.003566 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.791266 B = 7850.819653 C = 9166.877352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.298 6.298 3 C 0.285 3.715 4 C -0.259 4.259 5 C 0.046 3.954 6 C 0.592 3.408 7 O -0.564 6.564 8 N -0.585 5.585 9 C 0.105 3.895 10 C -0.139 4.139 11 C 0.173 3.827 12 H 0.050 0.950 13 N -0.724 5.724 14 C -0.224 4.224 15 H 0.076 0.924 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.299 1.299 21 H -0.300 1.300 22 C -0.098 4.098 23 H 0.087 0.913 24 C -0.130 4.130 25 C 0.122 3.878 26 N -0.261 5.261 27 N -0.386 5.386 28 C 0.062 3.938 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.163 0.837 33 H 0.047 0.953 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.373 0.627 38 H 0.247 0.753 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 -19.154 -7.197 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.204 6.204 3 C 0.116 3.884 4 C -0.289 4.289 5 C -0.119 4.119 6 C 0.378 3.622 7 O -0.442 6.442 8 N -0.315 5.315 9 C -0.018 4.018 10 C -0.180 4.180 11 C 0.064 3.936 12 H 0.068 0.932 13 N -0.365 5.365 14 C -0.356 4.356 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.226 1.226 21 H -0.228 1.228 22 C -0.118 4.118 23 H 0.105 0.895 24 C -0.188 4.188 25 C 0.000 4.000 26 N -0.092 5.092 27 N -0.183 5.183 28 C -0.077 4.077 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.181 0.819 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.207 0.793 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.809 -18.555 -7.189 23.139 hybrid contribution -0.085 0.552 0.788 0.966 sum -11.894 -18.002 -6.401 22.506 Atomic orbital electron populations 1.24112 0.75274 1.07437 1.03236 1.86328 1.24417 1.20150 1.89466 1.19456 0.90661 0.79866 0.98375 1.20370 0.93351 0.94880 1.20284 1.21630 0.92299 0.93656 1.04350 1.17285 0.86624 0.81643 0.76635 1.90728 1.35305 1.65316 1.52812 1.48022 1.09652 1.05117 1.68759 1.22312 0.86668 0.94539 0.98285 1.22392 1.00562 0.98216 0.96830 1.20447 0.92386 0.90918 0.89862 0.93194 1.42597 1.67611 1.18709 1.07597 1.19613 1.26423 0.94827 0.94736 0.90655 1.25400 1.03487 1.02100 0.95707 1.69815 1.52905 1.39368 1.00014 0.85194 0.77391 0.80477 0.77436 1.19058 1.22629 1.22763 1.21632 0.96168 0.96345 0.97652 0.89514 1.21594 0.95897 0.99309 1.02001 1.21641 0.84865 0.95015 0.98478 1.77567 0.95567 1.10972 1.25142 1.49665 1.08309 1.02396 1.57966 1.23019 0.72093 1.07045 1.05493 0.90155 0.90184 0.85032 0.81931 0.93440 0.85542 0.91561 0.91231 0.79344 0.94438 0.94086 0.91454 0.92029 0.92703 0.89142 0.88313 0.87883 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 9.44 113.37 1.07 1.03 16 2 O -0.30 -5.11 10.57 -90.94 -0.96 -6.07 16 3 C 0.29 6.50 7.78 83.46 0.65 7.15 16 4 C -0.26 -7.39 10.60 22.35 0.24 -7.15 16 5 C 0.05 1.48 6.81 42.34 0.29 1.77 16 6 C 0.59 21.83 7.69 86.75 0.67 22.50 16 7 O -0.56 -22.96 16.32 -3.94 -0.06 -23.02 16 8 N -0.59 -21.28 2.97 -822.43 -2.44 -23.73 16 9 C 0.10 3.78 5.87 86.36 0.51 4.29 16 10 C -0.14 -4.83 5.78 30.67 0.18 -4.66 16 11 C 0.17 6.60 2.53 45.02 0.11 6.71 16 12 H 0.05 1.92 8.08 -2.39 -0.02 1.91 16 13 N -0.72 -34.68 3.64 -322.80 -1.18 -35.85 16 14 C -0.22 -11.91 9.93 84.03 0.83 -11.07 16 15 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 17 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 18 Si 0.96 45.71 29.55 68.60 2.03 47.74 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 22 C -0.10 -3.29 2.67 -10.72 -0.03 -3.32 16 23 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 24 C -0.13 -4.22 9.05 71.98 0.65 -3.56 16 25 C 0.12 4.44 5.43 86.36 0.47 4.91 16 26 N -0.26 -7.71 9.00 -48.42 -0.44 -8.15 16 27 N -0.39 -8.34 4.04 -480.57 -1.94 -10.27 16 28 C 0.06 0.63 9.54 127.77 1.22 1.85 16 29 H 0.08 0.29 5.53 -2.39 -0.01 0.28 16 30 H 0.08 0.23 6.74 -2.39 -0.02 0.21 16 31 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 34 H 0.13 4.24 4.08 -42.09 -0.17 4.07 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.37 19.57 5.93 -92.71 -0.55 19.02 16 38 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.04 1.58 7.54 -2.39 -0.02 1.56 16 40 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 2.25 6.64 -2.39 -0.02 2.23 16 43 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 44 H 0.10 0.68 7.49 -2.38 -0.02 0.66 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.13 0.43 4.88 -2.39 -0.01 0.42 16 Total: -1.00 -72.63 361.92 2.91 -69.72 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.30 Total: 31.36 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.32 Total: 16.69 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -5.71 Total: -136.42 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.03 Total: -29.09 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.63 2.91 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036107350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.297 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds