Wall clock time and date at job start Tue Mar 31 2020 14:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35852 * 116.99930 * 2 1 4 4 N 1.30811 * 126.05773 * 0.16259 * 3 2 1 5 5 N 1.39927 * 108.87807 * 180.30022 * 4 3 2 6 6 C 1.46498 * 125.68713 * 179.73697 * 5 4 3 7 7 C 1.34159 * 108.62211 * 359.71639 * 5 4 3 8 8 C 1.38133 * 107.51335 * 0.02562 * 7 5 4 9 9 C 1.47244 * 126.45233 * 180.02562 * 8 7 5 10 10 O 1.21626 * 120.00282 * 140.11518 * 9 8 7 11 11 N 1.34775 * 120.00071 * 320.11089 * 9 8 7 12 12 C 1.46930 * 120.62899 * 354.50405 * 11 9 8 13 13 C 1.53200 * 108.77233 * 233.62722 * 12 11 9 14 14 C 1.53033 * 109.31167 * 305.36143 * 13 12 11 15 15 H 1.08997 * 109.46043 * 181.38612 * 14 13 12 16 16 N 1.46508 * 109.46257 * 301.34863 * 14 13 12 17 17 C 1.36933 * 119.99757 * 275.00275 * 16 14 13 18 18 H 1.08001 * 119.99918 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00059 * 179.97438 * 17 16 14 20 20 N 1.31611 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99978 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47248 * 90.00366 * 21 19 17 23 23 H 1.48504 * 109.47090 * 210.00051 * 21 19 17 24 24 H 1.48495 * 109.47373 * 330.00070 * 21 19 17 25 25 C 1.53042 * 109.53956 * 61.36604 * 14 13 12 26 26 H 1.08999 * 109.49713 * 58.58706 * 25 14 13 27 27 C 1.52998 * 109.49884 * 178.68469 * 25 14 13 28 28 C 1.46923 * 120.63516 * 174.51820 * 11 9 8 29 29 H 1.08999 * 109.47351 * 60.00761 * 1 2 3 30 30 H 1.09001 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47351 * 300.00527 * 1 2 3 32 32 H 1.08998 * 109.46996 * 269.97565 * 6 5 4 33 33 H 1.08994 * 109.47082 * 29.97498 * 6 5 4 34 34 H 1.09002 * 109.47210 * 149.98116 * 6 5 4 35 35 H 1.07998 * 126.24505 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.59046 * 113.83978 * 12 11 9 37 37 H 1.09000 * 109.58713 * 353.40879 * 12 11 9 38 38 H 1.08998 * 109.49577 * 185.41192 * 13 12 11 39 39 H 1.08995 * 109.52066 * 65.32759 * 13 12 11 40 40 H 0.96995 * 120.00273 * 94.99455 * 16 14 13 41 41 H 0.97003 * 120.00528 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47519 * 60.00012 * 27 25 14 43 43 H 1.09008 * 109.47109 * 180.02562 * 27 25 14 44 44 H 1.08998 * 109.47010 * 299.99740 * 27 25 14 45 45 H 1.09005 * 109.58823 * 246.16581 * 28 11 9 46 46 H 1.09004 * 109.58279 * 6.44335 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3766 0.0030 5 7 2.4281 3.3801 -0.0051 6 6 2.1703 4.8222 -0.0103 7 6 3.6384 2.8013 -0.0069 8 6 3.4452 1.4336 -0.0006 9 6 4.4955 0.4017 0.0006 10 8 4.3650 -0.5983 0.6806 11 7 5.6016 0.5650 -0.7520 12 6 5.7210 1.7066 -1.6693 13 6 6.0540 1.1812 -3.0694 14 6 7.3036 0.3008 -2.9956 15 1 7.5571 -0.0543 -3.9944 16 7 8.4201 1.0822 -2.4577 17 6 9.1770 1.8595 -3.2932 18 1 8.9511 1.8962 -4.3487 19 6 10.2345 2.6002 -2.7836 20 7 10.5101 2.5551 -1.4974 21 14 11.2675 3.6600 -3.9234 22 1 10.6781 5.0206 -4.0037 23 1 12.6524 3.7509 -3.3951 24 1 11.2932 3.0510 -5.2775 25 6 7.0328 -0.8968 -2.0820 26 1 6.1864 -1.4648 -2.4681 27 6 8.2715 -1.7935 -2.0349 28 6 6.7108 -0.3950 -0.6709 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.1028 5.1755 -1.0392 33 1 1.2321 5.0254 0.5059 34 1 2.9843 5.3387 0.4985 35 1 4.5902 3.3117 -0.0131 36 1 6.5174 2.3678 -1.3282 37 1 4.7777 2.2520 -1.6986 38 1 6.2399 2.0213 -3.7385 39 1 5.2169 0.5938 -3.4466 40 1 8.6231 1.0491 -1.5098 41 1 11.2489 3.0730 -1.1411 42 1 9.1170 -1.2252 -1.6473 43 1 8.0780 -2.6466 -1.3845 44 1 8.5019 -2.1480 -3.0395 45 1 7.5880 0.0949 -0.2482 46 1 6.4216 -1.2350 -0.0392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036134438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:46 Heat of formation + Delta-G solvation = 31.344880 kcal Electronic energy + Delta-G solvation = -28524.956494 eV Core-core repulsion = 24645.806779 eV Total energy + Delta-G solvation = -3879.149716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61333 -39.53554 -38.35560 -37.38266 -34.17518 -33.10266 -32.73643 -31.34940 -30.44910 -29.12702 -28.05457 -26.76509 -25.84208 -24.84922 -23.50442 -22.13115 -21.63331 -21.05275 -19.78879 -18.41893 -17.40893 -17.20817 -16.84052 -16.38003 -15.90115 -15.38721 -15.16524 -15.08961 -14.81495 -14.38415 -14.22480 -13.92721 -13.47565 -13.29022 -13.23487 -12.90140 -12.85270 -12.60307 -12.43536 -12.10033 -12.05416 -11.52880 -11.36537 -11.28972 -11.15698 -10.92215 -10.87873 -10.73979 -10.42103 -10.38071 -10.18530 -9.79262 -9.53789 -9.49970 -9.15971 -8.91229 -8.52549 -8.05626 -6.96454 -5.79160 -3.07036 1.47826 2.05966 2.30197 3.07894 3.36317 3.39957 3.46774 3.47763 3.60934 4.28544 4.57122 4.63334 4.88026 4.90787 5.03482 5.11482 5.13498 5.21987 5.29931 5.37317 5.40669 5.44691 5.49271 5.59720 5.63280 5.69586 5.81065 5.90221 6.02837 6.12381 6.17092 6.32052 6.37830 6.48081 6.57509 6.62853 6.73071 6.74661 6.84855 6.99913 7.10597 7.11871 7.50252 7.68744 7.88828 8.39641 8.62777 9.51272 10.08941 10.44561 11.43253 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.003777 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.034383 B = 7411.565176 C = 8608.985987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.274 6.274 3 C 0.310 3.690 4 N -0.354 5.354 5 N -0.352 5.352 6 C 0.101 3.899 7 C 0.123 3.877 8 C -0.282 4.282 9 C 0.594 3.406 10 O -0.545 6.545 11 N -0.599 5.599 12 C 0.111 3.889 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.903 3.097 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.283 1.283 25 C -0.108 4.108 26 H 0.066 0.934 27 C -0.137 4.137 28 C 0.122 3.878 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.477 1.507 2.124 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.177 6.177 3 C 0.105 3.895 4 N -0.194 5.194 5 N -0.134 5.134 6 C -0.040 4.040 7 C -0.028 4.028 8 C -0.297 4.297 9 C 0.382 3.618 10 O -0.423 6.423 11 N -0.331 5.331 12 C -0.012 4.012 13 C -0.190 4.190 14 C 0.069 3.931 15 H 0.068 0.932 16 N -0.361 5.361 17 C -0.366 4.366 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.734 3.266 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.209 1.209 25 C -0.129 4.129 26 H 0.084 0.916 27 C -0.195 4.195 28 C 0.000 4.000 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.210 0.790 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.511 1.453 2.354 18.717 hybrid contribution 1.196 0.603 -0.457 1.415 sum -17.315 2.056 1.897 17.539 Atomic orbital electron populations 1.22994 0.77767 1.03632 1.01918 1.86438 1.21827 1.20823 1.88609 1.20334 0.89968 0.85167 0.94049 1.77232 1.13346 0.94562 1.34254 1.47650 1.03107 1.06396 1.56239 1.21999 1.04425 0.73576 1.04001 1.23193 0.91205 0.92051 0.96336 1.19608 0.91711 0.92923 1.25459 1.17100 0.80403 0.84929 0.79341 1.90743 1.78293 1.29953 1.43302 1.47937 1.16990 1.27178 1.41009 1.21863 1.01247 0.88061 0.89983 1.22500 0.99424 1.01257 0.95816 1.20212 0.87705 0.89550 0.95673 0.93242 1.42481 1.32500 1.52696 1.08415 1.19226 1.07732 1.18550 0.91129 0.91315 1.24681 0.99272 1.00988 0.95855 1.69645 1.32008 1.45364 1.11084 0.86255 0.79896 0.80514 0.79890 1.21919 1.21929 1.20891 1.21698 0.98126 0.97224 0.95806 0.91597 1.21664 0.98125 0.98382 1.01294 1.21619 0.88430 0.92582 0.97393 0.92545 0.88144 0.92502 0.90113 0.89033 0.88754 0.78951 0.89903 0.91162 0.90962 0.93356 0.78069 0.93579 0.91084 0.93756 0.92922 0.90737 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.26 10.57 -19.27 -0.20 -4.46 16 3 C 0.31 4.86 7.88 -16.66 -0.13 4.73 16 4 N -0.35 -4.88 11.90 30.79 0.37 -4.51 16 5 N -0.35 -3.92 3.97 -67.60 -0.27 -4.18 16 6 C 0.10 0.61 11.44 59.85 0.68 1.29 16 7 C 0.12 1.49 9.09 -16.57 -0.15 1.34 16 8 C -0.28 -4.43 5.25 -104.95 -0.55 -4.98 16 9 C 0.59 10.80 7.58 -12.60 -0.10 10.71 16 10 O -0.54 -11.63 16.51 5.25 0.09 -11.54 16 11 N -0.60 -10.21 2.97 -174.10 -0.52 -10.72 16 12 C 0.11 1.76 5.20 -3.70 -0.02 1.74 16 13 C -0.15 -2.50 5.78 -26.61 -0.15 -2.65 16 14 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -16.25 3.64 -53.39 -0.19 -16.45 16 17 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.32 5.50 -17.44 -0.10 -0.42 16 20 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 21 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C -0.11 -1.84 2.67 -90.50 -0.24 -2.08 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 C -0.14 -2.25 9.05 37.16 0.34 -1.91 16 28 C 0.12 2.14 5.43 -3.71 -0.02 2.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.19 1.84 7.28 -52.49 -0.38 1.46 16 36 H 0.08 1.46 7.74 -51.93 -0.40 1.06 16 37 H 0.07 0.97 4.76 -51.93 -0.25 0.72 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.38 9.30 5.93 -40.82 -0.24 9.06 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 43 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 46 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -33.55 372.16 -6.09 -39.64 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.99 Total: 7.75 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.32 Total: 8.31 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.11 Total: -61.66 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.12 Total: -16.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.55 -6.09 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds