Wall clock time and date at job start Tue Mar 31 2020 14:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35852 * 116.99930 * 2 1 4 4 N 1.30811 * 126.05773 * 0.16259 * 3 2 1 5 5 N 1.39927 * 108.87807 * 180.30022 * 4 3 2 6 6 C 1.46498 * 125.68713 * 179.73697 * 5 4 3 7 7 C 1.34159 * 108.62211 * 359.71639 * 5 4 3 8 8 C 1.38133 * 107.51335 * 0.02562 * 7 5 4 9 9 C 1.47244 * 126.45233 * 180.02562 * 8 7 5 10 10 O 1.21626 * 120.00282 * 140.11518 * 9 8 7 11 11 N 1.34775 * 120.00071 * 320.11089 * 9 8 7 12 12 C 1.46930 * 120.62899 * 354.50405 * 11 9 8 13 13 C 1.53200 * 108.77233 * 233.62722 * 12 11 9 14 14 C 1.53033 * 109.31167 * 305.36143 * 13 12 11 15 15 H 1.08997 * 109.46043 * 181.38612 * 14 13 12 16 16 N 1.46508 * 109.46257 * 301.34863 * 14 13 12 17 17 C 1.36933 * 119.99757 * 275.00275 * 16 14 13 18 18 H 1.08001 * 119.99918 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00059 * 179.97438 * 17 16 14 20 20 N 1.31611 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99978 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47248 * 90.00366 * 21 19 17 23 23 H 1.48504 * 109.47090 * 210.00051 * 21 19 17 24 24 H 1.48495 * 109.47373 * 330.00070 * 21 19 17 25 25 C 1.53042 * 109.53956 * 61.36604 * 14 13 12 26 26 H 1.08999 * 109.49713 * 58.58706 * 25 14 13 27 27 C 1.52998 * 109.49884 * 178.68469 * 25 14 13 28 28 C 1.46923 * 120.63516 * 174.51820 * 11 9 8 29 29 H 1.08999 * 109.47351 * 60.00761 * 1 2 3 30 30 H 1.09001 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47351 * 300.00527 * 1 2 3 32 32 H 1.08998 * 109.46996 * 269.97565 * 6 5 4 33 33 H 1.08994 * 109.47082 * 29.97498 * 6 5 4 34 34 H 1.09002 * 109.47210 * 149.98116 * 6 5 4 35 35 H 1.07998 * 126.24505 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.59046 * 113.83978 * 12 11 9 37 37 H 1.09000 * 109.58713 * 353.40879 * 12 11 9 38 38 H 1.08998 * 109.49577 * 185.41192 * 13 12 11 39 39 H 1.08995 * 109.52066 * 65.32759 * 13 12 11 40 40 H 0.96995 * 120.00273 * 94.99455 * 16 14 13 41 41 H 0.97003 * 120.00528 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47519 * 60.00012 * 27 25 14 43 43 H 1.09008 * 109.47109 * 180.02562 * 27 25 14 44 44 H 1.08998 * 109.47010 * 299.99740 * 27 25 14 45 45 H 1.09005 * 109.58823 * 246.16581 * 28 11 9 46 46 H 1.09004 * 109.58279 * 6.44335 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3766 0.0030 5 7 2.4281 3.3801 -0.0051 6 6 2.1703 4.8222 -0.0103 7 6 3.6384 2.8013 -0.0069 8 6 3.4452 1.4336 -0.0006 9 6 4.4955 0.4017 0.0006 10 8 4.3650 -0.5983 0.6806 11 7 5.6016 0.5650 -0.7520 12 6 5.7210 1.7066 -1.6693 13 6 6.0540 1.1812 -3.0694 14 6 7.3036 0.3008 -2.9956 15 1 7.5571 -0.0543 -3.9944 16 7 8.4201 1.0822 -2.4577 17 6 9.1770 1.8595 -3.2932 18 1 8.9511 1.8962 -4.3487 19 6 10.2345 2.6002 -2.7836 20 7 10.5101 2.5551 -1.4974 21 14 11.2675 3.6600 -3.9234 22 1 10.6781 5.0206 -4.0037 23 1 12.6524 3.7509 -3.3951 24 1 11.2932 3.0510 -5.2775 25 6 7.0328 -0.8968 -2.0820 26 1 6.1864 -1.4648 -2.4681 27 6 8.2715 -1.7935 -2.0349 28 6 6.7108 -0.3950 -0.6709 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.1028 5.1755 -1.0392 33 1 1.2321 5.0254 0.5059 34 1 2.9843 5.3387 0.4985 35 1 4.5902 3.3117 -0.0131 36 1 6.5174 2.3678 -1.3282 37 1 4.7777 2.2520 -1.6986 38 1 6.2399 2.0213 -3.7385 39 1 5.2169 0.5938 -3.4466 40 1 8.6231 1.0491 -1.5098 41 1 11.2489 3.0730 -1.1411 42 1 9.1170 -1.2252 -1.6473 43 1 8.0780 -2.6466 -1.3845 44 1 8.5019 -2.1480 -3.0395 45 1 7.5880 0.0949 -0.2482 46 1 6.4216 -1.2350 -0.0392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036134438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:45 Heat of formation + Delta-G solvation = 7.061379 kcal Electronic energy + Delta-G solvation = -28526.009506 eV Core-core repulsion = 24645.806779 eV Total energy + Delta-G solvation = -3880.202727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64168 -40.91455 -39.35915 -38.87011 -35.79546 -34.52733 -33.77784 -32.94923 -31.53754 -30.85463 -28.85569 -27.87094 -27.08269 -26.22531 -25.27765 -23.28342 -23.01967 -22.04041 -21.02007 -19.83505 -19.22452 -18.37961 -18.08186 -17.41004 -17.05892 -16.61664 -16.42737 -16.19004 -15.93511 -15.84769 -15.73563 -15.46851 -14.82380 -14.72964 -14.43433 -14.24591 -13.84954 -13.54080 -13.53242 -13.46925 -12.95826 -12.92309 -12.85538 -12.81267 -12.64073 -12.37920 -12.16988 -12.07311 -11.96121 -11.91139 -11.81182 -11.52715 -11.11894 -10.93446 -10.79861 -10.16381 -9.65220 -9.40012 -8.86420 -7.83048 -5.08978 0.48870 1.13296 1.24567 1.53079 1.54984 1.61862 1.93006 2.22293 2.37051 2.64334 3.37642 3.50570 3.75085 3.82348 3.93205 4.03920 4.13682 4.15977 4.26806 4.33628 4.35072 4.38540 4.45452 4.49046 4.52998 4.58869 4.63495 4.69261 4.72944 4.76945 4.77545 4.90248 4.99891 5.08307 5.18370 5.27730 5.32344 5.36813 5.52826 5.65690 5.70523 5.82005 6.13809 6.38469 6.45182 6.57272 7.25238 7.46619 8.21936 8.47424 9.39975 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.003777 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.034383 B = 7411.565176 C = 8608.985987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.293 3.707 4 N -0.360 5.360 5 N -0.339 5.339 6 C 0.087 3.913 7 C 0.143 3.857 8 C -0.321 4.321 9 C 0.594 3.406 10 O -0.586 6.586 11 N -0.596 5.596 12 C 0.120 3.880 13 C -0.142 4.142 14 C 0.175 3.825 15 H 0.045 0.955 16 N -0.722 5.722 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.961 3.039 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.275 1.275 25 C -0.100 4.100 26 H 0.078 0.922 27 C -0.130 4.130 28 C 0.126 3.874 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.375 0.625 41 H 0.247 0.753 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.916 2.854 1.024 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.207 6.207 3 C 0.089 3.911 4 N -0.201 5.201 5 N -0.120 5.120 6 C -0.051 4.051 7 C -0.011 4.011 8 C -0.336 4.336 9 C 0.384 3.616 10 O -0.468 6.468 11 N -0.327 5.327 12 C -0.002 4.002 13 C -0.183 4.183 14 C 0.066 3.934 15 H 0.064 0.936 16 N -0.363 5.363 17 C -0.357 4.357 18 H 0.092 0.908 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.792 3.208 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.200 1.200 25 C -0.119 4.119 26 H 0.096 0.904 27 C -0.188 4.188 28 C 0.004 3.996 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.209 0.791 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.012 2.820 1.205 20.246 hybrid contribution 1.536 0.204 -0.128 1.555 sum -18.476 3.023 1.078 18.752 Atomic orbital electron populations 1.23237 0.75621 1.05321 1.02396 1.86382 1.24172 1.21473 1.88681 1.20529 0.90157 0.85631 0.94802 1.77203 1.14104 0.94523 1.34259 1.48144 1.02351 1.07707 1.53810 1.22508 1.06180 0.70620 1.05803 1.23460 0.92415 0.90905 0.94337 1.19557 0.91241 0.93844 1.28968 1.17468 0.80723 0.84939 0.78454 1.90706 1.79194 1.31894 1.44960 1.47955 1.16593 1.27222 1.40978 1.21822 1.01956 0.87465 0.88998 1.22388 0.98635 1.00917 0.96373 1.20385 0.87404 0.90078 0.95521 0.93650 1.42555 1.33325 1.52750 1.07707 1.19543 1.07171 1.17450 0.91575 0.90849 1.25316 1.00909 1.02963 0.96957 1.69792 1.32613 1.46748 1.12621 0.85320 0.77780 0.79200 0.78506 1.21554 1.23171 1.20042 1.21622 0.98698 0.96658 0.94968 0.90361 1.21593 0.96780 0.98531 1.01920 1.21485 0.88082 0.92484 0.97579 0.91860 0.85947 0.92123 0.88300 0.88063 0.85953 0.76383 0.91542 0.88563 0.91083 0.91802 0.79125 0.94396 0.93795 0.91884 0.92279 0.92428 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.70 113.37 1.21 1.79 16 2 O -0.30 -9.41 10.57 -91.88 -0.97 -10.38 16 3 C 0.29 9.00 7.88 85.70 0.68 9.67 16 4 N -0.36 -9.33 11.90 -169.98 -2.02 -11.36 16 5 N -0.34 -6.61 3.97 -367.80 -1.46 -8.07 16 6 C 0.09 0.72 11.44 127.77 1.46 2.19 16 7 C 0.14 3.12 9.09 84.31 0.77 3.89 16 8 C -0.32 -9.81 5.25 -20.08 -0.11 -9.92 16 9 C 0.59 21.59 7.58 86.61 0.66 22.25 16 10 O -0.59 -25.59 16.51 -4.11 -0.07 -25.66 16 11 N -0.60 -20.07 2.97 -822.97 -2.45 -22.52 16 12 C 0.12 3.62 5.20 86.36 0.45 4.07 16 13 C -0.14 -4.52 5.78 30.67 0.18 -4.34 16 14 C 0.17 6.39 2.53 45.01 0.11 6.50 16 15 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 16 N -0.72 -32.56 3.64 -322.81 -1.18 -33.74 16 17 C -0.23 -11.41 9.93 84.03 0.83 -10.57 16 18 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 19 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 20 N -0.97 -55.67 13.06 21.65 0.28 -55.39 16 21 Si 0.96 43.87 29.55 68.60 2.03 45.89 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.10 -3.31 2.67 -10.72 -0.03 -3.34 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 C -0.13 -4.23 9.05 71.98 0.65 -3.58 16 28 C 0.13 4.47 5.43 86.36 0.47 4.94 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.22 3.50 7.28 -2.91 -0.02 3.48 16 36 H 0.07 2.27 7.74 -2.39 -0.02 2.25 16 37 H 0.10 2.42 4.76 -2.39 -0.01 2.40 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.37 18.44 5.93 -92.71 -0.55 17.89 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.04 1.66 7.54 -2.39 -0.02 1.64 16 43 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 2.23 6.64 -2.38 -0.02 2.22 16 46 H 0.08 2.88 6.99 -2.38 -0.02 2.87 16 Total: -1.00 -73.41 372.16 2.41 -71.01 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.44 Total: 29.90 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 7.80 Total: 20.31 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -6.82 Total: -131.07 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.04 Total: -36.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.41 2.41 -71.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.067 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds