Wall clock time and date at job start Tue Mar 31 2020 14:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35852 * 116.99974 * 2 1 4 4 N 1.30808 * 126.05981 * 0.03082 * 3 2 1 5 5 N 1.39912 * 108.87896 * 179.97438 * 4 3 2 6 6 C 1.46507 * 125.68582 * 180.02562 * 5 4 3 7 7 C 1.34166 * 108.62544 * 359.72549 * 5 4 3 8 8 C 1.38134 * 107.50641 * 0.43417 * 7 5 4 9 9 C 1.47248 * 126.44294 * 179.83475 * 8 7 5 10 10 O 1.21626 * 119.99672 * 140.11191 * 9 8 7 11 11 N 1.34775 * 120.00106 * 320.10609 * 9 8 7 12 12 C 1.46923 * 120.63173 * 354.52684 * 11 9 8 13 13 C 1.53191 * 108.77477 * 233.58351 * 12 11 9 14 14 C 1.53042 * 109.31346 * 305.36698 * 13 12 11 15 15 H 1.09006 * 109.45774 * 301.34489 * 14 13 12 16 16 N 1.46494 * 109.46377 * 181.38625 * 14 13 12 17 17 C 1.36936 * 120.00265 * 84.99493 * 16 14 13 18 18 H 1.08006 * 119.99852 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00439 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00437 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99672 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47087 * 90.00191 * 21 19 17 23 23 H 1.48507 * 109.46918 * 210.00170 * 21 19 17 24 24 H 1.48497 * 109.47265 * 330.00153 * 21 19 17 25 25 C 1.53043 * 109.53726 * 61.36039 * 14 13 12 26 26 H 1.08995 * 109.49441 * 58.59300 * 25 14 13 27 27 C 1.53002 * 109.49260 * 178.65209 * 25 14 13 28 28 C 1.46928 * 120.62657 * 174.49830 * 11 9 8 29 29 H 1.09003 * 109.47599 * 59.99961 * 1 2 3 30 30 H 1.09003 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47199 * 299.99263 * 1 2 3 32 32 H 1.08994 * 109.47226 * 89.97258 * 6 5 4 33 33 H 1.09006 * 109.46733 * 209.97442 * 6 5 4 34 34 H 1.08998 * 109.47015 * 329.97489 * 6 5 4 35 35 H 1.07996 * 126.24292 * 180.26291 * 7 5 4 36 36 H 1.09002 * 109.58829 * 113.79593 * 12 11 9 37 37 H 1.09000 * 109.58636 * 353.37139 * 12 11 9 38 38 H 1.09000 * 109.49771 * 185.41222 * 13 12 11 39 39 H 1.09001 * 109.49738 * 65.31457 * 13 12 11 40 40 H 0.97005 * 120.00234 * 265.00444 * 16 14 13 41 41 H 0.96997 * 120.00508 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47071 * 60.00275 * 27 25 14 43 43 H 1.09010 * 109.46970 * 180.02562 * 27 25 14 44 44 H 1.08998 * 109.47596 * 300.00388 * 27 25 14 45 45 H 1.08998 * 109.58752 * 6.63313 * 28 11 9 46 46 H 1.09001 * 109.70572 * 246.27179 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3766 0.0006 5 7 2.4281 3.3799 0.0009 6 6 2.1703 4.8222 0.0021 7 6 3.6385 2.8012 0.0067 8 6 3.4451 1.4335 0.0000 9 6 4.4956 0.4016 -0.0005 10 8 4.3604 -0.6040 0.6701 11 7 5.6067 0.5714 -0.7442 12 6 5.7323 1.7208 -1.6506 13 6 6.0757 1.2079 -3.0527 14 6 7.3250 0.3271 -2.9775 15 1 8.1526 0.9051 -2.5662 16 7 7.6757 -0.1385 -4.3215 17 6 8.4399 0.6486 -5.1411 18 1 8.7845 1.6124 -4.7964 19 6 8.7717 0.2077 -6.4148 20 7 9.5067 0.9640 -7.2024 21 14 8.1763 -1.4596 -7.0107 22 1 6.8584 -1.3053 -7.6771 23 1 9.1566 -2.0193 -7.9757 24 1 8.0409 -2.3796 -5.8529 25 6 7.0478 -0.8785 -2.0764 26 1 6.2044 -1.4432 -2.4737 27 6 8.2862 -1.7758 -2.0288 28 6 6.7155 -0.3892 -0.6634 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.1063 5.1790 1.0300 33 1 2.9826 5.3368 -0.5113 34 1 1.2303 5.0236 -0.5115 35 1 4.5902 3.3116 0.0124 36 1 6.5261 2.3793 -1.2979 37 1 4.7892 2.2663 -1.6819 38 1 6.2662 2.0539 -3.7131 39 1 5.2415 0.6234 -3.4407 40 1 7.3664 -1.0042 -4.6310 41 1 9.7389 0.6558 -8.0923 42 1 9.1290 -1.2110 -1.6305 43 1 8.0882 -2.6346 -1.3873 44 1 8.5235 -2.1214 -3.0350 45 1 6.4210 -1.2359 -0.0433 46 1 7.5903 0.0949 -0.2292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036134439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:49 Heat of formation + Delta-G solvation = 33.157174 kcal Electronic energy + Delta-G solvation = -28141.221657 eV Core-core repulsion = 24262.150528 eV Total energy + Delta-G solvation = -3879.071129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76365 -39.68564 -38.45878 -37.50107 -34.66338 -33.25333 -32.82733 -31.53559 -30.63631 -29.76267 -28.15036 -26.92394 -26.04836 -25.04773 -22.97654 -21.97555 -21.53522 -21.19606 -20.09630 -19.39085 -17.63325 -17.42537 -17.03450 -16.51651 -16.08251 -15.60335 -15.30984 -15.19022 -14.91155 -14.69017 -14.32197 -13.83719 -13.64243 -13.44135 -13.27385 -13.06403 -12.99926 -12.70823 -12.44477 -12.31997 -12.13737 -11.87954 -11.70096 -11.44024 -11.37779 -11.03464 -11.01995 -10.83679 -10.63446 -10.46764 -10.20984 -9.74019 -9.73550 -9.57670 -9.30681 -8.91577 -8.68611 -8.37675 -7.26282 -5.78183 -3.12975 1.31211 1.92683 2.16463 2.91608 3.16914 3.37500 3.39391 3.41637 3.46015 4.14410 4.42101 4.58893 4.73477 4.75608 4.91640 5.01001 5.05599 5.06358 5.09478 5.12113 5.25502 5.30326 5.30649 5.34931 5.48962 5.54767 5.57624 5.65026 5.76345 5.91820 6.04294 6.07393 6.17895 6.33043 6.34686 6.45770 6.51736 6.61622 6.72672 6.85010 6.99353 7.00191 7.37204 7.61224 7.97828 8.40040 8.41243 9.19955 9.93092 10.13457 11.40205 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003334 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.785682 B = 8396.446471 C = 8801.090760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.274 6.274 3 C 0.311 3.689 4 N -0.351 5.351 5 N -0.350 5.350 6 C 0.100 3.900 7 C 0.121 3.879 8 C -0.284 4.284 9 C 0.597 3.403 10 O -0.539 6.539 11 N -0.605 5.605 12 C 0.103 3.897 13 C -0.151 4.151 14 C 0.189 3.811 15 H 0.057 0.943 16 N -0.746 5.746 17 C -0.240 4.240 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.114 4.114 26 H 0.069 0.931 27 C -0.137 4.137 28 C 0.124 3.876 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.192 0.808 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 6.470 17.086 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.177 6.177 3 C 0.106 3.894 4 N -0.191 5.191 5 N -0.132 5.132 6 C -0.041 4.041 7 C -0.031 4.031 8 C -0.299 4.299 9 C 0.385 3.615 10 O -0.416 6.416 11 N -0.338 5.338 12 C -0.020 4.020 13 C -0.192 4.192 14 C 0.080 3.920 15 H 0.075 0.925 16 N -0.388 5.388 17 C -0.370 4.370 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.134 4.134 26 H 0.087 0.913 27 C -0.195 4.195 28 C 0.001 3.999 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.209 0.791 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.735 6.505 17.328 24.293 hybrid contribution 0.080 -1.259 -0.788 1.487 sum -15.655 5.246 16.540 23.370 Atomic orbital electron populations 1.23016 0.77568 1.03778 1.01983 1.86442 1.21996 1.20732 1.88496 1.20343 0.89951 0.85239 0.93822 1.77275 1.13230 0.94554 1.34083 1.47673 1.03102 1.06483 1.55953 1.22017 1.04711 0.73463 1.03871 1.23106 0.91208 0.91932 0.96840 1.19577 0.91750 0.92868 1.25696 1.17113 0.80316 0.85017 0.79060 1.90762 1.78113 1.29429 1.43345 1.47978 1.17099 1.26771 1.41949 1.22013 1.01541 0.87839 0.90614 1.22632 1.00607 1.01677 0.94317 1.20168 0.94055 0.92173 0.85635 0.92545 1.42785 1.63062 1.20210 1.12693 1.19050 1.23500 1.00249 0.94230 0.89223 1.24644 0.99955 0.97802 0.96647 1.69691 1.42038 1.37388 1.09152 0.86596 0.78264 0.85459 0.78477 1.21210 1.21814 1.20239 1.21789 0.98792 0.97905 0.94954 0.91295 1.21672 0.96888 0.98410 1.02529 1.21645 0.88054 0.92805 0.97375 0.92421 0.88045 0.92457 0.90267 0.88641 0.88813 0.79090 0.91415 0.90259 0.90241 0.92307 0.80625 0.93102 0.92607 0.93558 0.91484 0.89231 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 101.05 1.08 1.40 16 2 O -0.27 -4.05 10.57 -19.27 -0.20 -4.26 16 3 C 0.31 4.52 7.88 -16.66 -0.13 4.39 16 4 N -0.35 -4.43 11.90 30.79 0.37 -4.07 16 5 N -0.35 -3.30 3.97 -67.59 -0.27 -3.56 16 6 C 0.10 0.43 11.44 59.85 0.68 1.12 16 7 C 0.12 1.17 9.09 -16.57 -0.15 1.01 16 8 C -0.28 -3.92 5.25 -104.95 -0.55 -4.47 16 9 C 0.60 9.53 7.58 -12.60 -0.10 9.43 16 10 O -0.54 -10.46 16.51 5.25 0.09 -10.38 16 11 N -0.61 -8.60 2.97 -174.10 -0.52 -9.12 16 12 C 0.10 1.28 5.45 -3.71 -0.02 1.26 16 13 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 14 C 0.19 3.43 2.19 -67.89 -0.15 3.28 16 15 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.75 -16.88 4.21 -53.38 -0.22 -17.11 16 17 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 21 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 25 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 C -0.14 -2.12 9.03 37.16 0.34 -1.79 16 28 C 0.12 1.77 5.73 -3.71 -0.02 1.75 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.19 1.13 7.28 -52.49 -0.38 0.75 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.87 4.77 -51.93 -0.25 0.62 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.36 8.27 5.37 -40.82 -0.22 8.05 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 45 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -36.49 372.99 -5.82 -42.31 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.10 Total: 5.20 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.36 Total: 6.15 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.13 Total: -61.89 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.12 Total: -14.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.49 -5.82 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.469 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds