Wall clock time and date at job start Tue Mar 31 2020 14:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35852 * 116.99974 * 2 1 4 4 N 1.30808 * 126.05981 * 0.03082 * 3 2 1 5 5 N 1.39912 * 108.87896 * 179.97438 * 4 3 2 6 6 C 1.46507 * 125.68582 * 180.02562 * 5 4 3 7 7 C 1.34166 * 108.62544 * 359.72549 * 5 4 3 8 8 C 1.38134 * 107.50641 * 0.43417 * 7 5 4 9 9 C 1.47248 * 126.44294 * 179.83475 * 8 7 5 10 10 O 1.21626 * 119.99672 * 140.11191 * 9 8 7 11 11 N 1.34775 * 120.00106 * 320.10609 * 9 8 7 12 12 C 1.46923 * 120.63173 * 354.52684 * 11 9 8 13 13 C 1.53191 * 108.77477 * 233.58351 * 12 11 9 14 14 C 1.53042 * 109.31346 * 305.36698 * 13 12 11 15 15 H 1.09006 * 109.45774 * 301.34489 * 14 13 12 16 16 N 1.46494 * 109.46377 * 181.38625 * 14 13 12 17 17 C 1.36936 * 120.00265 * 84.99493 * 16 14 13 18 18 H 1.08006 * 119.99852 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00439 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00437 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99672 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47087 * 90.00191 * 21 19 17 23 23 H 1.48507 * 109.46918 * 210.00170 * 21 19 17 24 24 H 1.48497 * 109.47265 * 330.00153 * 21 19 17 25 25 C 1.53043 * 109.53726 * 61.36039 * 14 13 12 26 26 H 1.08995 * 109.49441 * 58.59300 * 25 14 13 27 27 C 1.53002 * 109.49260 * 178.65209 * 25 14 13 28 28 C 1.46928 * 120.62657 * 174.49830 * 11 9 8 29 29 H 1.09003 * 109.47599 * 59.99961 * 1 2 3 30 30 H 1.09003 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47199 * 299.99263 * 1 2 3 32 32 H 1.08994 * 109.47226 * 89.97258 * 6 5 4 33 33 H 1.09006 * 109.46733 * 209.97442 * 6 5 4 34 34 H 1.08998 * 109.47015 * 329.97489 * 6 5 4 35 35 H 1.07996 * 126.24292 * 180.26291 * 7 5 4 36 36 H 1.09002 * 109.58829 * 113.79593 * 12 11 9 37 37 H 1.09000 * 109.58636 * 353.37139 * 12 11 9 38 38 H 1.09000 * 109.49771 * 185.41222 * 13 12 11 39 39 H 1.09001 * 109.49738 * 65.31457 * 13 12 11 40 40 H 0.97005 * 120.00234 * 265.00444 * 16 14 13 41 41 H 0.96997 * 120.00508 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47071 * 60.00275 * 27 25 14 43 43 H 1.09010 * 109.46970 * 180.02562 * 27 25 14 44 44 H 1.08998 * 109.47596 * 300.00388 * 27 25 14 45 45 H 1.08998 * 109.58752 * 6.63313 * 28 11 9 46 46 H 1.09001 * 109.70572 * 246.27179 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3766 0.0006 5 7 2.4281 3.3799 0.0009 6 6 2.1703 4.8222 0.0021 7 6 3.6385 2.8012 0.0067 8 6 3.4451 1.4335 0.0000 9 6 4.4956 0.4016 -0.0005 10 8 4.3604 -0.6040 0.6701 11 7 5.6067 0.5714 -0.7442 12 6 5.7323 1.7208 -1.6506 13 6 6.0757 1.2079 -3.0527 14 6 7.3250 0.3271 -2.9775 15 1 8.1526 0.9051 -2.5662 16 7 7.6757 -0.1385 -4.3215 17 6 8.4399 0.6486 -5.1411 18 1 8.7845 1.6124 -4.7964 19 6 8.7717 0.2077 -6.4148 20 7 9.5067 0.9640 -7.2024 21 14 8.1763 -1.4596 -7.0107 22 1 6.8584 -1.3053 -7.6771 23 1 9.1566 -2.0193 -7.9757 24 1 8.0409 -2.3796 -5.8529 25 6 7.0478 -0.8785 -2.0764 26 1 6.2044 -1.4432 -2.4737 27 6 8.2862 -1.7758 -2.0288 28 6 6.7155 -0.3892 -0.6634 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.1063 5.1790 1.0300 33 1 2.9826 5.3368 -0.5113 34 1 1.2303 5.0236 -0.5115 35 1 4.5902 3.3116 0.0124 36 1 6.5261 2.3793 -1.2979 37 1 4.7892 2.2663 -1.6819 38 1 6.2662 2.0539 -3.7131 39 1 5.2415 0.6234 -3.4407 40 1 7.3664 -1.0042 -4.6310 41 1 9.7389 0.6558 -8.0923 42 1 9.1290 -1.2110 -1.6305 43 1 8.0882 -2.6346 -1.3873 44 1 8.5235 -2.1214 -3.0350 45 1 6.4210 -1.2359 -0.0433 46 1 7.5903 0.0949 -0.2292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036134439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:48 Heat of formation + Delta-G solvation = 4.874432 kcal Electronic energy + Delta-G solvation = -28142.448089 eV Core-core repulsion = 24262.150528 eV Total energy + Delta-G solvation = -3880.297560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.62782 -40.86943 -39.36838 -38.86580 -36.21350 -34.55308 -33.78402 -33.19595 -31.65910 -31.31162 -28.86496 -27.89278 -27.16114 -26.38413 -24.43350 -23.06877 -22.94303 -22.04903 -21.38684 -20.59070 -19.44141 -18.42755 -18.10597 -17.41838 -17.09672 -16.76976 -16.42698 -16.23079 -15.98739 -15.91843 -15.74256 -15.23169 -14.93546 -14.77063 -14.42493 -14.35895 -13.84394 -13.69626 -13.51078 -13.44322 -13.37700 -12.96150 -12.94152 -12.87317 -12.79012 -12.40245 -12.18533 -12.03011 -12.00886 -11.91622 -11.83286 -11.73557 -11.14697 -10.98012 -10.85896 -10.16549 -9.69349 -9.44426 -9.22278 -7.98023 -5.28815 0.52766 1.14056 1.26908 1.39322 1.39835 1.47014 1.88536 2.25142 2.37477 2.50769 3.33997 3.37524 3.58882 3.74793 3.82803 3.96253 4.08242 4.12960 4.24888 4.30476 4.30698 4.36196 4.41511 4.49918 4.52515 4.55616 4.61800 4.66551 4.72593 4.79519 4.81108 4.83084 4.89280 4.98625 5.05306 5.21347 5.31918 5.40587 5.54121 5.67874 5.83480 5.86333 6.13869 6.26674 6.42512 6.55427 7.12586 7.24994 7.90360 8.08157 9.23477 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003334 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.785682 B = 8396.446471 C = 8801.090760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.288 3.712 4 N -0.367 5.367 5 N -0.341 5.341 6 C 0.087 3.913 7 C 0.148 3.852 8 C -0.325 4.325 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.144 4.144 14 C 0.183 3.817 15 H 0.058 0.942 16 N -0.750 5.750 17 C -0.214 4.214 18 H 0.067 0.933 19 C -0.061 4.061 20 N -0.983 5.983 21 Si 0.941 3.059 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.256 1.256 25 C -0.105 4.105 26 H 0.053 0.947 27 C -0.134 4.134 28 C 0.128 3.872 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.360 0.640 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 7.873 18.672 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.210 6.210 3 C 0.083 3.917 4 N -0.207 5.207 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.006 4.006 8 C -0.341 4.341 9 C 0.387 3.613 10 O -0.466 6.466 11 N -0.334 5.334 12 C -0.011 4.011 13 C -0.185 4.185 14 C 0.076 3.924 15 H 0.076 0.924 16 N -0.392 5.392 17 C -0.345 4.345 18 H 0.085 0.915 19 C -0.252 4.252 20 N -0.635 5.635 21 Si 0.770 3.230 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.181 1.181 25 C -0.125 4.125 26 H 0.071 0.929 27 C -0.192 4.192 28 C 0.006 3.994 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.252 0.748 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.193 0.807 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.412 7.937 18.960 26.302 hybrid contribution 0.222 -1.547 -1.200 1.971 sum -16.190 6.389 17.760 24.867 Atomic orbital electron populations 1.23209 0.75766 1.05196 1.02334 1.86375 1.24071 1.21845 1.88708 1.20644 0.90589 0.85523 0.94900 1.77224 1.14486 0.94689 1.34346 1.48174 1.02596 1.07666 1.53702 1.22520 1.06330 0.70595 1.05679 1.23628 0.92645 0.90476 0.93869 1.19607 0.90962 0.94223 1.29286 1.17438 0.80639 0.84862 0.78395 1.90725 1.78994 1.31472 1.45399 1.48014 1.16646 1.27045 1.41675 1.22089 1.03768 0.87459 0.87769 1.22460 0.98707 1.00578 0.96772 1.20425 0.94899 0.93408 0.83702 0.92396 1.42851 1.62570 1.19765 1.13975 1.19041 1.21863 0.99339 0.94239 0.91494 1.25314 1.01241 1.01372 0.97293 1.69844 1.44593 1.39479 1.09562 0.85608 0.77236 0.81860 0.78261 1.21246 1.22591 1.18107 1.21673 0.98458 0.96865 0.95531 0.92884 1.21633 0.96852 0.99190 1.01499 1.21596 0.88959 0.93098 0.95783 0.92122 0.86174 0.91952 0.88435 0.85260 0.88591 0.74812 0.88076 0.88230 0.91253 0.94025 0.80733 0.93605 0.91773 0.91581 0.93933 0.90063 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.80 16 2 O -0.31 -9.25 10.57 -91.88 -0.97 -10.22 16 3 C 0.29 8.22 7.88 85.70 0.68 8.90 16 4 N -0.37 -8.74 11.90 -169.99 -2.02 -10.77 16 5 N -0.34 -5.30 3.97 -367.76 -1.46 -6.76 16 6 C 0.09 0.40 11.44 127.77 1.46 1.86 16 7 C 0.15 2.31 9.09 84.31 0.77 3.08 16 8 C -0.33 -8.49 5.25 -20.08 -0.11 -8.59 16 9 C 0.60 18.43 7.58 86.61 0.66 19.09 16 10 O -0.59 -22.89 16.51 -4.11 -0.07 -22.95 16 11 N -0.60 -15.80 2.97 -822.99 -2.45 -18.25 16 12 C 0.11 2.40 5.45 86.36 0.47 2.87 16 13 C -0.14 -4.42 5.66 30.67 0.17 -4.24 16 14 C 0.18 6.37 2.19 45.02 0.10 6.47 16 15 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 16 N -0.75 -33.41 4.21 -322.81 -1.36 -34.77 16 17 C -0.21 -11.55 10.41 84.03 0.87 -10.68 16 18 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 20 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 21 Si 0.94 45.67 27.74 68.60 1.90 47.57 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 24 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 25 C -0.11 -3.21 2.46 -10.72 -0.03 -3.24 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 C -0.13 -3.93 9.03 71.98 0.65 -3.28 16 28 C 0.13 3.41 5.73 86.36 0.49 3.90 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.24 1.39 7.28 -2.91 -0.02 1.37 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.79 4.77 -2.39 -0.01 1.78 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.36 16.17 5.37 -92.70 -0.50 15.67 16 41 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.04 1.45 7.36 -2.39 -0.02 1.43 16 45 H 0.08 2.36 6.99 -2.39 -0.02 2.34 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -82.92 372.99 2.18 -80.74 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.43 Total: 22.01 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 7.87 Total: 14.89 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -6.99 Total: -132.04 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.04 Total: -33.17 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.57 kcal Total: -82.92 2.18 -80.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.617 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds