Wall clock time and date at job start Tue Mar 31 2020 14:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35854 * 116.99726 * 2 1 4 4 N 1.30802 * 126.05711 * 0.02562 * 3 2 1 5 5 N 1.39922 * 108.88144 * 179.97438 * 4 3 2 6 6 C 1.46501 * 125.69318 * 179.97438 * 5 4 3 7 7 C 1.34164 * 108.61987 * 359.72916 * 5 4 3 8 8 C 1.38132 * 107.50921 * 0.42924 * 7 5 4 9 9 C 1.47255 * 126.45067 * 179.83510 * 8 7 5 10 10 O 1.21615 * 120.00163 * 230.16752 * 9 8 7 11 11 N 1.34776 * 119.99401 * 50.16971 * 9 8 7 12 12 C 1.46918 * 120.63761 * 355.66186 * 11 9 8 13 13 C 1.53188 * 108.77658 * 126.36752 * 12 11 9 14 14 C 1.53043 * 109.31324 * 54.63930 * 13 12 11 15 15 H 1.08994 * 109.46272 * 178.62609 * 14 13 12 16 16 N 1.46507 * 109.46016 * 58.65224 * 14 13 12 17 17 C 1.36932 * 119.99691 * 84.99918 * 16 14 13 18 18 H 1.07997 * 120.00578 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99548 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47413 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47232 * 300.00221 * 21 19 17 24 24 H 1.48499 * 109.47346 * 60.00419 * 21 19 17 25 25 C 1.53043 * 109.53415 * 298.63501 * 14 13 12 26 26 H 1.08992 * 109.49699 * 301.40829 * 25 14 13 27 27 C 1.53006 * 109.49555 * 181.31496 * 25 14 13 28 28 C 1.46934 * 120.62317 * 175.64028 * 11 9 8 29 29 H 1.09006 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47170 * 299.99682 * 1 2 3 31 31 H 1.08995 * 109.47624 * 60.00265 * 1 2 3 32 32 H 1.08998 * 109.46850 * 90.02603 * 6 5 4 33 33 H 1.08999 * 109.47184 * 210.02562 * 6 5 4 34 34 H 1.08997 * 109.46522 * 330.02817 * 6 5 4 35 35 H 1.08005 * 126.24780 * 180.26362 * 7 5 4 36 36 H 1.09007 * 109.58241 * 6.58355 * 12 11 9 37 37 H 1.08998 * 109.70727 * 246.22906 * 12 11 9 38 38 H 1.08998 * 109.50209 * 294.68921 * 13 12 11 39 39 H 1.09000 * 109.50020 * 174.58612 * 13 12 11 40 40 H 0.96995 * 119.99769 * 265.00743 * 16 14 13 41 41 H 0.96998 * 120.00491 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47257 * 59.99450 * 27 25 14 43 43 H 1.08997 * 109.46805 * 179.97438 * 27 25 14 44 44 H 1.09002 * 109.46764 * 300.00204 * 27 25 14 45 45 H 1.08999 * 109.58859 * 353.41790 * 28 11 9 46 46 H 1.09000 * 109.58278 * 113.84667 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3765 0.0005 5 7 2.4280 3.3801 0.0009 6 6 2.1702 4.8222 0.0009 7 6 3.6384 2.8014 0.0067 8 6 3.4452 1.4337 0.0001 9 6 4.4956 0.4017 -0.0004 10 8 4.4596 -0.5023 -0.8131 11 7 5.4968 0.4590 0.9001 12 6 5.6070 1.5943 1.8260 13 6 5.6838 1.0568 3.2584 14 6 6.8314 0.0493 3.3600 15 1 6.9038 -0.3165 4.3842 16 7 8.0883 0.7017 2.9848 17 6 8.7990 1.4071 3.9188 18 1 8.4333 1.4822 4.9322 19 6 9.9903 2.0248 3.5633 20 7 10.4364 1.9330 2.3285 21 14 10.9602 2.9865 4.8376 22 1 12.1846 3.5451 4.2098 23 1 10.1239 4.0954 5.3630 24 1 11.3431 2.0839 5.9530 25 6 6.5655 -1.1260 2.4166 26 1 5.6183 -1.5966 2.6797 27 6 7.6969 -2.1483 2.5431 28 6 6.4986 -0.6133 0.9746 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 2.1065 5.1798 1.0286 33 1 2.9823 5.3365 -0.5130 34 1 1.2301 5.0232 -0.5127 35 1 4.5902 3.3118 0.0124 36 1 4.7318 2.2360 1.7230 37 1 6.5075 2.1658 1.6013 38 1 4.7449 0.5656 3.5136 39 1 5.8623 1.8821 3.9476 40 1 8.4170 0.6341 2.0747 41 1 11.2685 2.3649 2.0800 42 1 7.7460 -2.5107 3.5699 43 1 7.5069 -2.9854 1.8713 44 1 8.6435 -1.6771 2.2784 45 1 6.2119 -1.4281 0.3099 46 1 7.4731 -0.2239 0.6797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036134441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:52 Heat of formation + Delta-G solvation = 31.455272 kcal Electronic energy + Delta-G solvation = -28543.957842 eV Core-core repulsion = 24664.812914 eV Total energy + Delta-G solvation = -3879.144929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61457 -39.53737 -38.36637 -37.39961 -34.16459 -33.10664 -32.72667 -31.34538 -30.46172 -29.11872 -28.06968 -26.77520 -25.84644 -24.84106 -23.49312 -22.14164 -21.62648 -21.07260 -19.78970 -18.39003 -17.40618 -17.24368 -16.87494 -16.39496 -15.89928 -15.38791 -15.19870 -15.10235 -14.81477 -14.39298 -14.22020 -13.91880 -13.50591 -13.30087 -13.22544 -12.91482 -12.86374 -12.57792 -12.40546 -12.11137 -12.05646 -11.51941 -11.37032 -11.29133 -11.16345 -10.91014 -10.88542 -10.73347 -10.42102 -10.37482 -10.21323 -9.79377 -9.55705 -9.49949 -9.16259 -8.90187 -8.51441 -8.06298 -6.95754 -5.78116 -3.06127 1.49760 2.05428 2.33683 3.04248 3.27520 3.41298 3.46984 3.47415 3.59051 4.28382 4.57859 4.62509 4.87148 4.89986 5.02678 5.10832 5.12553 5.22705 5.30978 5.37123 5.40199 5.45255 5.48367 5.60472 5.64045 5.68979 5.81049 5.90678 6.02595 6.14073 6.16713 6.32438 6.38136 6.48956 6.57400 6.63132 6.73362 6.74874 6.84346 7.00136 7.10321 7.11043 7.49368 7.68929 7.88029 8.40620 8.60916 9.52117 10.09813 10.45414 11.44217 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003768 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.318335 B = 7429.750156 C = 8532.474923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.277 6.277 3 C 0.308 3.692 4 N -0.352 5.352 5 N -0.352 5.352 6 C 0.101 3.899 7 C 0.120 3.880 8 C -0.278 4.278 9 C 0.595 3.405 10 O -0.545 6.545 11 N -0.597 5.597 12 C 0.111 3.889 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.049 0.951 16 N -0.718 5.718 17 C -0.236 4.236 18 H 0.068 0.932 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.903 3.097 22 H -0.292 1.292 23 H -0.288 1.288 24 H -0.287 1.287 25 C -0.109 4.109 26 H 0.065 0.935 27 C -0.137 4.137 28 C 0.122 3.878 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 2.726 -3.764 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.180 6.180 3 C 0.103 3.897 4 N -0.192 5.192 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.031 4.031 8 C -0.293 4.293 9 C 0.382 3.618 10 O -0.423 6.423 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.190 4.190 14 C 0.069 3.931 15 H 0.067 0.933 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.086 0.914 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.129 4.129 26 H 0.084 0.916 27 C -0.195 4.195 28 C 0.000 4.000 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.209 0.791 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.645 2.724 -4.057 19.275 hybrid contribution 1.193 0.508 0.580 1.420 sum -17.452 3.232 -3.477 18.086 Atomic orbital electron populations 1.22994 0.77655 1.03645 1.01951 1.86412 1.21956 1.20920 1.88723 1.20291 0.89856 0.85180 0.94374 1.77216 1.13352 0.94548 1.34094 1.47624 1.03059 1.06353 1.56418 1.21989 1.04390 0.73597 1.03971 1.23086 0.91196 0.91907 0.96906 1.19573 0.91738 0.93018 1.25020 1.17111 0.80052 0.84064 0.80538 1.90740 1.76252 1.36572 1.38700 1.47963 1.26955 1.23254 1.34680 1.21829 1.01937 0.87898 0.89456 1.22498 0.99392 1.01336 0.95755 1.20210 0.86718 0.90052 0.96150 0.93255 1.42469 1.21119 1.61053 1.11425 1.19181 1.01640 1.24039 0.91903 0.91370 1.24684 0.98244 1.01504 0.96312 1.69636 1.22935 1.48861 1.16669 0.86331 0.79566 0.79910 0.80710 1.21844 1.21450 1.21405 1.21707 0.98831 0.96944 0.95400 0.91628 1.21663 0.99330 0.97474 1.00988 1.21624 0.91384 0.89948 0.97056 0.88136 0.92504 0.92487 0.90143 0.88808 0.89041 0.79060 0.91201 0.89825 0.93399 0.91000 0.78059 0.93517 0.92907 0.93755 0.91061 0.89790 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.28 -4.27 10.57 -19.28 -0.20 -4.47 16 3 C 0.31 4.80 7.89 -16.66 -0.13 4.67 16 4 N -0.35 -4.83 11.90 30.79 0.37 -4.46 16 5 N -0.35 -3.88 3.98 -67.60 -0.27 -4.15 16 6 C 0.10 0.59 11.44 59.85 0.68 1.28 16 7 C 0.12 1.43 9.12 -16.57 -0.15 1.28 16 8 C -0.28 -4.36 5.16 -104.95 -0.54 -4.90 16 9 C 0.60 10.82 7.57 -12.60 -0.10 10.73 16 10 O -0.54 -11.65 16.54 5.26 0.09 -11.56 16 11 N -0.60 -10.25 2.97 -174.10 -0.52 -10.76 16 12 C 0.11 1.79 5.63 -3.72 -0.02 1.76 16 13 C -0.15 -2.51 5.78 -26.61 -0.15 -2.66 16 14 C 0.18 3.37 2.53 -67.88 -0.17 3.20 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -16.36 3.64 -53.38 -0.19 -16.55 16 17 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 18 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 21 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.11 -1.85 2.67 -90.50 -0.24 -2.09 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 C -0.14 -2.25 9.05 37.16 0.34 -1.92 16 28 C 0.12 2.16 5.41 -3.71 -0.02 2.14 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.19 1.75 7.61 -52.48 -0.40 1.35 16 36 H 0.07 0.97 4.57 -51.93 -0.24 0.73 16 37 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.38 9.38 5.93 -40.82 -0.24 9.14 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 45 H 0.08 1.51 7.03 -51.93 -0.36 1.14 16 46 H 0.07 1.43 6.64 -51.93 -0.34 1.08 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -33.72 372.72 -6.08 -39.81 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.00 Total: 7.77 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.33 Total: 8.27 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.11 Total: -61.88 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.12 Total: -16.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.72 -6.08 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.262 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds