Wall clock time and date at job start Tue Mar 31 2020 14:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35854 * 116.99726 * 2 1 4 4 N 1.30802 * 126.05711 * 0.02562 * 3 2 1 5 5 N 1.39922 * 108.88144 * 179.97438 * 4 3 2 6 6 C 1.46501 * 125.69318 * 179.97438 * 5 4 3 7 7 C 1.34164 * 108.61987 * 359.72916 * 5 4 3 8 8 C 1.38132 * 107.50921 * 0.42924 * 7 5 4 9 9 C 1.47255 * 126.45067 * 179.83510 * 8 7 5 10 10 O 1.21615 * 120.00163 * 230.16752 * 9 8 7 11 11 N 1.34776 * 119.99401 * 50.16971 * 9 8 7 12 12 C 1.46918 * 120.63761 * 355.66186 * 11 9 8 13 13 C 1.53188 * 108.77658 * 126.36752 * 12 11 9 14 14 C 1.53043 * 109.31324 * 54.63930 * 13 12 11 15 15 H 1.08994 * 109.46272 * 178.62609 * 14 13 12 16 16 N 1.46507 * 109.46016 * 58.65224 * 14 13 12 17 17 C 1.36932 * 119.99691 * 84.99918 * 16 14 13 18 18 H 1.07997 * 120.00578 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99548 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47413 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47232 * 300.00221 * 21 19 17 24 24 H 1.48499 * 109.47346 * 60.00419 * 21 19 17 25 25 C 1.53043 * 109.53415 * 298.63501 * 14 13 12 26 26 H 1.08992 * 109.49699 * 301.40829 * 25 14 13 27 27 C 1.53006 * 109.49555 * 181.31496 * 25 14 13 28 28 C 1.46934 * 120.62317 * 175.64028 * 11 9 8 29 29 H 1.09006 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47170 * 299.99682 * 1 2 3 31 31 H 1.08995 * 109.47624 * 60.00265 * 1 2 3 32 32 H 1.08998 * 109.46850 * 90.02603 * 6 5 4 33 33 H 1.08999 * 109.47184 * 210.02562 * 6 5 4 34 34 H 1.08997 * 109.46522 * 330.02817 * 6 5 4 35 35 H 1.08005 * 126.24780 * 180.26362 * 7 5 4 36 36 H 1.09007 * 109.58241 * 6.58355 * 12 11 9 37 37 H 1.08998 * 109.70727 * 246.22906 * 12 11 9 38 38 H 1.08998 * 109.50209 * 294.68921 * 13 12 11 39 39 H 1.09000 * 109.50020 * 174.58612 * 13 12 11 40 40 H 0.96995 * 119.99769 * 265.00743 * 16 14 13 41 41 H 0.96998 * 120.00491 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47257 * 59.99450 * 27 25 14 43 43 H 1.08997 * 109.46805 * 179.97438 * 27 25 14 44 44 H 1.09002 * 109.46764 * 300.00204 * 27 25 14 45 45 H 1.08999 * 109.58859 * 353.41790 * 28 11 9 46 46 H 1.09000 * 109.58278 * 113.84667 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3765 0.0005 5 7 2.4280 3.3801 0.0009 6 6 2.1702 4.8222 0.0009 7 6 3.6384 2.8014 0.0067 8 6 3.4452 1.4337 0.0001 9 6 4.4956 0.4017 -0.0004 10 8 4.4596 -0.5023 -0.8131 11 7 5.4968 0.4590 0.9001 12 6 5.6070 1.5943 1.8260 13 6 5.6838 1.0568 3.2584 14 6 6.8314 0.0493 3.3600 15 1 6.9038 -0.3165 4.3842 16 7 8.0883 0.7017 2.9848 17 6 8.7990 1.4071 3.9188 18 1 8.4333 1.4822 4.9322 19 6 9.9903 2.0248 3.5633 20 7 10.4364 1.9330 2.3285 21 14 10.9602 2.9865 4.8376 22 1 12.1846 3.5451 4.2098 23 1 10.1239 4.0954 5.3630 24 1 11.3431 2.0839 5.9530 25 6 6.5655 -1.1260 2.4166 26 1 5.6183 -1.5966 2.6797 27 6 7.6969 -2.1483 2.5431 28 6 6.4986 -0.6133 0.9746 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 2.1065 5.1798 1.0286 33 1 2.9823 5.3365 -0.5130 34 1 1.2301 5.0232 -0.5127 35 1 4.5902 3.3118 0.0124 36 1 4.7318 2.2360 1.7230 37 1 6.5075 2.1658 1.6013 38 1 4.7449 0.5656 3.5136 39 1 5.8623 1.8821 3.9476 40 1 8.4170 0.6341 2.0747 41 1 11.2685 2.3649 2.0800 42 1 7.7460 -2.5107 3.5699 43 1 7.5069 -2.9854 1.8713 44 1 8.6435 -1.6771 2.2784 45 1 6.2119 -1.4281 0.3099 46 1 7.4731 -0.2239 0.6797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036134441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:51 Heat of formation + Delta-G solvation = 6.969576 kcal Electronic energy + Delta-G solvation = -28545.019622 eV Core-core repulsion = 24664.812914 eV Total energy + Delta-G solvation = -3880.206708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.63261 -40.92237 -39.35771 -38.89494 -35.79732 -34.52313 -33.77108 -32.95548 -31.53829 -30.85850 -28.86071 -27.88171 -27.08358 -26.22595 -25.27499 -23.28441 -23.02616 -22.04594 -21.01784 -19.81554 -19.22454 -18.42243 -18.10947 -17.42595 -17.04728 -16.60740 -16.44836 -16.21663 -15.93488 -15.86728 -15.71516 -15.46861 -14.86742 -14.74884 -14.41605 -14.24643 -13.79163 -13.55091 -13.53892 -13.48089 -12.96502 -12.91726 -12.85916 -12.78726 -12.64392 -12.38677 -12.17059 -12.12318 -11.97547 -11.92109 -11.80507 -11.53112 -11.13191 -10.95202 -10.79795 -10.15541 -9.63941 -9.40916 -8.86948 -7.83167 -5.09317 0.52918 1.16512 1.25897 1.53591 1.55007 1.60534 1.84339 2.18139 2.36230 2.64215 3.38114 3.50207 3.77252 3.82047 3.92711 4.03433 4.12716 4.15323 4.27542 4.33724 4.36813 4.38284 4.45147 4.49690 4.52993 4.58907 4.63065 4.69220 4.73187 4.76846 4.77494 4.89641 4.99651 5.08018 5.17642 5.27241 5.31944 5.35481 5.52162 5.64916 5.69709 5.83083 6.13961 6.38080 6.45378 6.55886 7.22798 7.46132 8.21694 8.46964 9.39700 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003768 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.318335 B = 7429.750156 C = 8532.474923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.291 3.709 4 N -0.359 5.359 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.139 3.861 8 C -0.318 4.318 9 C 0.596 3.404 10 O -0.587 6.587 11 N -0.595 5.595 12 C 0.120 3.880 13 C -0.142 4.142 14 C 0.175 3.825 15 H 0.046 0.954 16 N -0.722 5.722 17 C -0.227 4.227 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.962 3.038 22 H -0.303 1.303 23 H -0.278 1.278 24 H -0.285 1.285 25 C -0.099 4.099 26 H 0.079 0.921 27 C -0.130 4.130 28 C 0.126 3.874 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.375 0.625 41 H 0.247 0.753 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 4.194 -2.772 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.210 6.210 3 C 0.087 3.913 4 N -0.200 5.200 5 N -0.121 5.121 6 C -0.050 4.050 7 C -0.014 4.014 8 C -0.334 4.334 9 C 0.385 3.615 10 O -0.468 6.468 11 N -0.325 5.325 12 C -0.002 4.002 13 C -0.182 4.182 14 C 0.066 3.934 15 H 0.064 0.936 16 N -0.363 5.363 17 C -0.359 4.359 18 H 0.092 0.908 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.793 3.207 22 H -0.229 1.229 23 H -0.204 1.204 24 H -0.212 1.212 25 C -0.119 4.119 26 H 0.098 0.902 27 C -0.188 4.188 28 C 0.004 3.996 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.238 0.762 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.208 0.792 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.339 4.215 -3.019 20.990 hybrid contribution 1.583 0.076 0.272 1.608 sum -18.756 4.291 -2.748 19.436 Atomic orbital electron populations 1.23235 0.75532 1.05333 1.02404 1.86356 1.24274 1.21559 1.88804 1.20482 0.90019 0.85650 0.95144 1.77186 1.14144 0.94517 1.34132 1.48121 1.02310 1.07667 1.53976 1.22500 1.06168 0.70625 1.05756 1.23404 0.92493 0.90745 0.94796 1.19515 0.91219 0.93950 1.28689 1.17488 0.80260 0.84070 0.79663 1.90703 1.77252 1.38533 1.40270 1.47990 1.26613 1.23262 1.34667 1.21777 1.02234 0.87592 0.88600 1.22378 0.98981 1.00667 0.96199 1.20392 0.85855 0.90931 0.96240 0.93600 1.42549 1.22281 1.61014 1.10504 1.19519 1.01332 1.22651 0.92441 0.90817 1.25333 0.99612 1.03391 0.97817 1.69791 1.23142 1.50500 1.18398 0.85383 0.77936 0.78853 0.78565 1.22943 1.20437 1.21202 1.21629 0.99565 0.96373 0.94355 0.90239 1.21593 0.97654 0.97738 1.01837 1.21489 0.90713 0.90068 0.97377 0.85926 0.91856 0.92123 0.88377 0.85892 0.88121 0.76232 0.88478 0.91747 0.91769 0.91191 0.79172 0.94386 0.92219 0.91838 0.93853 0.90283 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.70 113.37 1.21 1.80 16 2 O -0.31 -9.39 10.57 -91.91 -0.97 -10.36 16 3 C 0.29 8.86 7.89 85.70 0.68 9.54 16 4 N -0.36 -9.22 11.90 -169.99 -2.02 -11.25 16 5 N -0.34 -6.49 3.98 -367.78 -1.46 -7.96 16 6 C 0.09 0.69 11.44 127.77 1.46 2.15 16 7 C 0.14 2.98 9.12 84.31 0.77 3.75 16 8 C -0.32 -9.67 5.16 -20.07 -0.10 -9.77 16 9 C 0.60 21.66 7.57 86.61 0.66 22.32 16 10 O -0.59 -25.66 16.54 -4.08 -0.07 -25.73 16 11 N -0.59 -20.21 2.97 -822.99 -2.45 -22.65 16 12 C 0.12 3.69 5.63 86.36 0.49 4.18 16 13 C -0.14 -4.53 5.78 30.67 0.18 -4.35 16 14 C 0.17 6.42 2.53 45.02 0.11 6.53 16 15 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 16 N -0.72 -32.90 3.64 -322.80 -1.18 -34.07 16 17 C -0.23 -11.61 9.93 84.04 0.83 -10.77 16 18 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 20 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 21 Si 0.96 44.09 29.55 68.60 2.03 46.12 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 C -0.10 -3.31 2.67 -10.71 -0.03 -3.34 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 27 C -0.13 -4.24 9.05 71.98 0.65 -3.59 16 28 C 0.13 4.51 5.41 86.36 0.47 4.98 16 29 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.22 3.29 7.61 -2.91 -0.02 3.27 16 36 H 0.10 2.45 4.57 -2.38 -0.01 2.44 16 37 H 0.06 2.27 7.74 -2.39 -0.02 2.25 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.37 18.65 5.93 -92.71 -0.55 18.10 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.65 7.54 -2.39 -0.02 1.63 16 45 H 0.08 2.90 7.03 -2.39 -0.02 2.88 16 46 H 0.06 2.22 6.64 -2.39 -0.02 2.20 16 Total: -1.00 -74.13 372.72 2.45 -71.68 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.44 Total: 29.97 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.84 Total: 20.15 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -6.82 Total: -131.84 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.04 Total: -36.08 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.13 2.45 -71.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.649 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds