Wall clock time and date at job start Tue Mar 31 2020 14:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35847 * 116.99907 * 2 1 4 4 N 1.30810 * 126.05997 * 359.97273 * 3 2 1 5 5 N 1.39920 * 108.87870 * 179.80280 * 4 3 2 6 6 C 1.46507 * 125.68565 * 180.23513 * 5 4 3 7 7 C 1.34157 * 108.62419 * 0.37296 * 5 4 3 8 8 C 1.38137 * 107.50969 * 359.63637 * 7 5 4 9 9 C 1.47246 * 126.44620 * 180.24832 * 8 7 5 10 10 O 1.21625 * 119.99432 * 219.96578 * 9 8 7 11 11 N 1.34769 * 120.00380 * 39.96803 * 9 8 7 12 12 C 1.46928 * 120.62980 * 5.50185 * 11 9 8 13 13 C 1.53198 * 108.77474 * 126.37039 * 12 11 9 14 14 C 1.53038 * 109.31137 * 54.63549 * 13 12 11 15 15 H 1.09001 * 109.45677 * 58.64311 * 14 13 12 16 16 N 1.46501 * 109.45689 * 178.61247 * 14 13 12 17 17 C 1.36939 * 120.00284 * 274.99889 * 16 14 13 18 18 H 1.07999 * 119.99517 * 0.02562 * 17 16 14 19 19 C 1.38805 * 119.99903 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99847 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00255 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46891 * 90.00050 * 21 19 17 23 23 H 1.48498 * 109.46775 * 209.99776 * 21 19 17 24 24 H 1.48493 * 109.47083 * 330.00050 * 21 19 17 25 25 C 1.53033 * 109.54079 * 298.63566 * 14 13 12 26 26 H 1.09003 * 109.50126 * 301.41494 * 25 14 13 27 27 C 1.53001 * 109.50212 * 181.31751 * 25 14 13 28 28 C 1.46925 * 120.63417 * 185.22630 * 11 9 8 29 29 H 1.08997 * 109.46901 * 299.99687 * 1 2 3 30 30 H 1.09001 * 109.47171 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46969 * 270.15802 * 6 5 4 33 33 H 1.09006 * 109.46761 * 30.15846 * 6 5 4 34 34 H 1.08992 * 109.46661 * 150.15832 * 6 5 4 35 35 H 1.07999 * 126.24304 * 179.90552 * 7 5 4 36 36 H 1.08996 * 109.58953 * 246.15799 * 12 11 9 37 37 H 1.09003 * 109.58860 * 6.44282 * 12 11 9 38 38 H 1.08998 * 109.49683 * 174.58924 * 13 12 11 39 39 H 1.09001 * 109.49592 * 294.65122 * 13 12 11 40 40 H 0.96997 * 119.99899 * 95.00890 * 16 14 13 41 41 H 0.97002 * 119.99949 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.46911 * 59.99700 * 27 25 14 43 43 H 1.08992 * 109.47308 * 179.97438 * 27 25 14 44 44 H 1.09005 * 109.46852 * 300.00366 * 27 25 14 45 45 H 1.08996 * 109.58330 * 353.41424 * 28 11 9 46 46 H 1.09004 * 109.58838 * 113.84114 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 0.0043 6 6 2.1704 4.8222 0.0102 7 6 3.6385 2.8013 -0.0006 8 6 3.4452 1.4335 0.0000 9 6 4.4956 0.4016 0.0008 10 8 4.3638 -0.6007 -0.6754 11 7 5.6029 0.5677 0.7509 12 6 5.7237 1.7125 1.6640 13 6 6.0592 1.1922 3.0653 14 6 7.3087 0.3115 2.9925 15 1 8.1386 0.8914 2.5887 16 7 7.6516 -0.1610 4.3362 17 6 8.4114 0.6217 5.1641 18 1 8.7575 1.5874 4.8265 19 6 8.7367 0.1737 6.4369 20 7 9.4675 0.9257 7.2325 21 14 8.1387 -1.4971 7.0204 22 1 9.1432 -2.5328 6.6690 23 1 7.9510 -1.4690 8.4932 24 1 6.8465 -1.8176 6.3627 25 6 7.0363 -0.8893 2.0838 26 1 6.1905 -1.4560 2.4733 27 6 8.2750 -1.7863 2.0378 28 6 6.7096 -0.3957 0.6755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1042 5.1836 -1.0160 33 1 1.2314 5.0213 0.5268 34 1 2.9836 5.3344 0.5241 35 1 4.5903 3.3116 -0.0001 36 1 6.5196 2.3725 1.3191 37 1 4.7813 2.2595 1.6909 38 1 6.2461 2.0347 3.7311 39 1 5.2223 0.6065 3.4458 40 1 7.3405 -1.0283 4.6394 41 1 9.6945 0.6129 8.1222 42 1 8.5070 -2.1371 3.0434 43 1 8.0803 -2.6416 1.3909 44 1 9.1199 -1.2193 1.6468 45 1 6.4167 -1.2406 0.0525 46 1 7.5876 0.0890 0.2484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036134442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:55 Heat of formation + Delta-G solvation = 33.206288 kcal Electronic energy + Delta-G solvation = -28144.068375 eV Core-core repulsion = 24264.999376 eV Total energy + Delta-G solvation = -3879.068999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76382 -39.69499 -38.45878 -37.50927 -34.66300 -33.25937 -32.83948 -31.53918 -30.63693 -29.76219 -28.15093 -26.92761 -26.05266 -25.05042 -22.97787 -21.98189 -21.53367 -21.19592 -20.10451 -19.38913 -17.63415 -17.42480 -17.03675 -16.51537 -16.08299 -15.60604 -15.31224 -15.18929 -14.91119 -14.69372 -14.33025 -13.84051 -13.63855 -13.44205 -13.26855 -13.06423 -12.99802 -12.70853 -12.46611 -12.30697 -12.13782 -11.88443 -11.70498 -11.44622 -11.38069 -11.02963 -11.02246 -10.83969 -10.65173 -10.47257 -10.21331 -9.74226 -9.72624 -9.57932 -9.30409 -8.91608 -8.68583 -8.38026 -7.26264 -5.78257 -3.13055 1.31298 1.92775 2.16430 2.91272 3.16725 3.37728 3.39349 3.41697 3.45851 4.14425 4.42107 4.58839 4.73486 4.75636 4.91663 5.00987 5.05633 5.06170 5.09368 5.12360 5.25227 5.29906 5.30525 5.34948 5.49396 5.54407 5.57869 5.65123 5.76280 5.91264 6.03969 6.07206 6.17930 6.32570 6.34422 6.45692 6.51538 6.60972 6.72041 6.84557 6.99250 7.00150 7.37166 7.61160 7.97786 8.39988 8.41236 9.19895 9.93036 10.13375 11.40128 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.003336 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.992462 B = 8390.203549 C = 8790.987734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.274 6.274 3 C 0.311 3.689 4 N -0.351 5.351 5 N -0.350 5.350 6 C 0.100 3.900 7 C 0.121 3.879 8 C -0.284 4.284 9 C 0.597 3.403 10 O -0.539 6.539 11 N -0.605 5.605 12 C 0.103 3.897 13 C -0.151 4.151 14 C 0.190 3.810 15 H 0.057 0.943 16 N -0.746 5.746 17 C -0.240 4.240 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.115 4.115 26 H 0.068 0.932 27 C -0.136 4.136 28 C 0.124 3.876 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.192 0.808 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 6.555 -17.109 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.177 6.177 3 C 0.106 3.894 4 N -0.191 5.191 5 N -0.132 5.132 6 C -0.041 4.041 7 C -0.031 4.031 8 C -0.299 4.299 9 C 0.385 3.615 10 O -0.417 6.417 11 N -0.338 5.338 12 C -0.020 4.020 13 C -0.192 4.192 14 C 0.080 3.920 15 H 0.075 0.925 16 N -0.387 5.387 17 C -0.370 4.370 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.135 4.135 26 H 0.087 0.913 27 C -0.194 4.194 28 C 0.001 3.999 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.209 0.791 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.640 6.594 -17.355 24.275 hybrid contribution 0.061 -1.258 0.789 1.487 sum -15.579 5.336 -16.565 23.358 Atomic orbital electron populations 1.23017 0.77559 1.03780 1.01986 1.86442 1.22006 1.20736 1.88498 1.20342 0.89949 0.85240 0.93823 1.77278 1.13225 0.94551 1.34089 1.47673 1.03102 1.06485 1.55951 1.22017 1.04704 0.73462 1.03877 1.23104 0.91209 0.91934 0.96838 1.19576 0.91751 0.92869 1.25698 1.17110 0.80277 0.84976 0.79135 1.90761 1.78011 1.29650 1.43228 1.47980 1.17432 1.26888 1.41488 1.22012 1.01567 0.87936 0.90491 1.22632 1.00649 1.01644 0.94314 1.20165 0.94086 0.92162 0.85609 0.92502 1.42792 1.63204 1.20265 1.12488 1.19050 1.23364 1.00383 0.94219 0.89217 1.24644 0.99971 0.97815 0.96613 1.69699 1.42275 1.37387 1.08911 0.86600 0.78695 0.85559 0.78000 1.21048 1.21840 1.20340 1.21716 0.98831 0.97955 0.95014 0.91305 1.21662 0.96881 0.98444 1.02456 1.21561 0.88116 0.92759 0.97424 0.92414 0.92457 0.88044 0.90262 0.88819 0.88640 0.79090 0.91421 0.90277 0.90259 0.92324 0.80624 0.93106 0.91557 0.93513 0.92561 0.89217 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 101.05 1.08 1.40 16 2 O -0.27 -4.06 10.57 -19.26 -0.20 -4.26 16 3 C 0.31 4.52 7.88 -16.66 -0.13 4.39 16 4 N -0.35 -4.44 11.90 30.79 0.37 -4.07 16 5 N -0.35 -3.30 3.97 -67.60 -0.27 -3.57 16 6 C 0.10 0.44 11.44 59.85 0.68 1.12 16 7 C 0.12 1.17 9.09 -16.57 -0.15 1.02 16 8 C -0.28 -3.92 5.25 -104.95 -0.55 -4.47 16 9 C 0.60 9.54 7.58 -12.60 -0.10 9.45 16 10 O -0.54 -10.47 16.51 5.26 0.09 -10.38 16 11 N -0.61 -8.61 2.98 -174.36 -0.52 -9.13 16 12 C 0.10 1.29 5.46 -3.71 -0.02 1.27 16 13 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 14 C 0.19 3.43 2.19 -67.89 -0.15 3.28 16 15 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.75 -16.89 4.21 -53.39 -0.22 -17.12 16 17 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 21 Si 0.88 21.96 27.74 -169.99 -4.71 17.25 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 25 C -0.12 -1.83 2.44 -90.72 -0.22 -2.06 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 C -0.14 -2.09 9.03 37.16 0.34 -1.75 16 28 C 0.12 1.77 5.70 -3.93 -0.02 1.75 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.19 1.13 7.29 -52.49 -0.38 0.75 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.87 4.76 -51.93 -0.25 0.62 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.28 5.37 -40.82 -0.22 8.06 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.07 1.15 7.36 -51.93 -0.38 0.77 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -36.53 372.97 -5.83 -42.36 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.10 Total: 5.16 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.36 Total: 6.19 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.13 Total: -61.93 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.12 Total: -14.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.53 -5.83 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.563 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds