Wall clock time and date at job start Tue Mar 31 2020 14:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35847 * 116.99907 * 2 1 4 4 N 1.30810 * 126.05997 * 359.97273 * 3 2 1 5 5 N 1.39920 * 108.87870 * 179.80280 * 4 3 2 6 6 C 1.46507 * 125.68565 * 180.23513 * 5 4 3 7 7 C 1.34157 * 108.62419 * 0.37296 * 5 4 3 8 8 C 1.38137 * 107.50969 * 359.63637 * 7 5 4 9 9 C 1.47246 * 126.44620 * 180.24832 * 8 7 5 10 10 O 1.21625 * 119.99432 * 219.96578 * 9 8 7 11 11 N 1.34769 * 120.00380 * 39.96803 * 9 8 7 12 12 C 1.46928 * 120.62980 * 5.50185 * 11 9 8 13 13 C 1.53198 * 108.77474 * 126.37039 * 12 11 9 14 14 C 1.53038 * 109.31137 * 54.63549 * 13 12 11 15 15 H 1.09001 * 109.45677 * 58.64311 * 14 13 12 16 16 N 1.46501 * 109.45689 * 178.61247 * 14 13 12 17 17 C 1.36939 * 120.00284 * 274.99889 * 16 14 13 18 18 H 1.07999 * 119.99517 * 0.02562 * 17 16 14 19 19 C 1.38805 * 119.99903 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99847 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00255 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46891 * 90.00050 * 21 19 17 23 23 H 1.48498 * 109.46775 * 209.99776 * 21 19 17 24 24 H 1.48493 * 109.47083 * 330.00050 * 21 19 17 25 25 C 1.53033 * 109.54079 * 298.63566 * 14 13 12 26 26 H 1.09003 * 109.50126 * 301.41494 * 25 14 13 27 27 C 1.53001 * 109.50212 * 181.31751 * 25 14 13 28 28 C 1.46925 * 120.63417 * 185.22630 * 11 9 8 29 29 H 1.08997 * 109.46901 * 299.99687 * 1 2 3 30 30 H 1.09001 * 109.47171 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46969 * 270.15802 * 6 5 4 33 33 H 1.09006 * 109.46761 * 30.15846 * 6 5 4 34 34 H 1.08992 * 109.46661 * 150.15832 * 6 5 4 35 35 H 1.07999 * 126.24304 * 179.90552 * 7 5 4 36 36 H 1.08996 * 109.58953 * 246.15799 * 12 11 9 37 37 H 1.09003 * 109.58860 * 6.44282 * 12 11 9 38 38 H 1.08998 * 109.49683 * 174.58924 * 13 12 11 39 39 H 1.09001 * 109.49592 * 294.65122 * 13 12 11 40 40 H 0.96997 * 119.99899 * 95.00890 * 16 14 13 41 41 H 0.97002 * 119.99949 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.46911 * 59.99700 * 27 25 14 43 43 H 1.08992 * 109.47308 * 179.97438 * 27 25 14 44 44 H 1.09005 * 109.46852 * 300.00366 * 27 25 14 45 45 H 1.08996 * 109.58330 * 353.41424 * 28 11 9 46 46 H 1.09004 * 109.58838 * 113.84114 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 0.0043 6 6 2.1704 4.8222 0.0102 7 6 3.6385 2.8013 -0.0006 8 6 3.4452 1.4335 0.0000 9 6 4.4956 0.4016 0.0008 10 8 4.3638 -0.6007 -0.6754 11 7 5.6029 0.5677 0.7509 12 6 5.7237 1.7125 1.6640 13 6 6.0592 1.1922 3.0653 14 6 7.3087 0.3115 2.9925 15 1 8.1386 0.8914 2.5887 16 7 7.6516 -0.1610 4.3362 17 6 8.4114 0.6217 5.1641 18 1 8.7575 1.5874 4.8265 19 6 8.7367 0.1737 6.4369 20 7 9.4675 0.9257 7.2325 21 14 8.1387 -1.4971 7.0204 22 1 9.1432 -2.5328 6.6690 23 1 7.9510 -1.4690 8.4932 24 1 6.8465 -1.8176 6.3627 25 6 7.0363 -0.8893 2.0838 26 1 6.1905 -1.4560 2.4733 27 6 8.2750 -1.7863 2.0378 28 6 6.7096 -0.3957 0.6755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1042 5.1836 -1.0160 33 1 1.2314 5.0213 0.5268 34 1 2.9836 5.3344 0.5241 35 1 4.5903 3.3116 -0.0001 36 1 6.5196 2.3725 1.3191 37 1 4.7813 2.2595 1.6909 38 1 6.2461 2.0347 3.7311 39 1 5.2223 0.6065 3.4458 40 1 7.3405 -1.0283 4.6394 41 1 9.6945 0.6129 8.1222 42 1 8.5070 -2.1371 3.0434 43 1 8.0803 -2.6416 1.3909 44 1 9.1199 -1.2193 1.6468 45 1 6.4167 -1.2406 0.0525 46 1 7.5876 0.0890 0.2484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036134442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:54 Heat of formation + Delta-G solvation = 4.888578 kcal Electronic energy + Delta-G solvation = -28145.296323 eV Core-core repulsion = 24264.999376 eV Total energy + Delta-G solvation = -3880.296947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62977 -40.87995 -39.37015 -38.87330 -36.21471 -34.56446 -33.78539 -33.20540 -31.66031 -31.31212 -28.86702 -27.89488 -27.16170 -26.38928 -24.43524 -23.07470 -22.94341 -22.05092 -21.39282 -20.59192 -19.43982 -18.42973 -18.11085 -17.41877 -17.09814 -16.77630 -16.42507 -16.23537 -15.99127 -15.91961 -15.74517 -15.23216 -14.92301 -14.77710 -14.44427 -14.36035 -13.84237 -13.68544 -13.51162 -13.44210 -13.38269 -12.95849 -12.93962 -12.87570 -12.78501 -12.42537 -12.18014 -12.10216 -11.98008 -11.90329 -11.83385 -11.73054 -11.13501 -10.98205 -10.86568 -10.16745 -9.69594 -9.44678 -9.22322 -7.98159 -5.28942 0.52729 1.14046 1.26633 1.39496 1.39525 1.46611 1.87886 2.25172 2.37271 2.50570 3.33321 3.37786 3.59208 3.74568 3.82656 3.95816 4.08230 4.13041 4.24759 4.30333 4.30472 4.36015 4.41478 4.49886 4.52489 4.55651 4.61787 4.66147 4.72402 4.79430 4.81375 4.83086 4.89223 4.98271 5.05548 5.21456 5.31658 5.40772 5.53844 5.67650 5.83401 5.86223 6.13659 6.26646 6.42302 6.55193 7.12450 7.24765 7.90216 8.08017 9.23364 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.003336 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.992462 B = 8390.203549 C = 8790.987734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.288 3.712 4 N -0.367 5.367 5 N -0.341 5.341 6 C 0.087 3.913 7 C 0.148 3.852 8 C -0.326 4.326 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.144 4.144 14 C 0.183 3.817 15 H 0.059 0.941 16 N -0.750 5.750 17 C -0.214 4.214 18 H 0.067 0.933 19 C -0.061 4.061 20 N -0.983 5.983 21 Si 0.942 3.058 22 H -0.280 1.280 23 H -0.300 1.300 24 H -0.262 1.262 25 C -0.106 4.106 26 H 0.052 0.948 27 C -0.134 4.134 28 C 0.128 3.872 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.360 0.640 41 H 0.255 0.745 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 7.985 -18.653 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.210 6.210 3 C 0.083 3.917 4 N -0.207 5.207 5 N -0.121 5.121 6 C -0.051 4.051 7 C -0.006 4.006 8 C -0.341 4.341 9 C 0.387 3.613 10 O -0.466 6.466 11 N -0.334 5.334 12 C -0.011 4.011 13 C -0.185 4.185 14 C 0.076 3.924 15 H 0.077 0.923 16 N -0.392 5.392 17 C -0.345 4.345 18 H 0.085 0.915 19 C -0.252 4.252 20 N -0.635 5.635 21 Si 0.771 3.229 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.126 4.126 26 H 0.070 0.930 27 C -0.192 4.192 28 C 0.006 3.994 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.252 0.748 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.193 0.807 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.313 8.055 -18.942 26.264 hybrid contribution 0.206 -1.558 1.186 1.969 sum -16.107 6.497 -17.756 24.838 Atomic orbital electron populations 1.23211 0.75754 1.05198 1.02338 1.86374 1.24083 1.21852 1.88710 1.20642 0.90586 0.85526 0.94906 1.77227 1.14481 0.94684 1.34350 1.48174 1.02593 1.07670 1.53697 1.22521 1.06332 0.70588 1.05681 1.23626 0.92649 0.90476 0.93868 1.19607 0.90965 0.94229 1.29292 1.17437 0.80597 0.84824 0.78478 1.90725 1.78897 1.31691 1.45276 1.48018 1.16984 1.27157 1.41214 1.22086 1.03816 0.87560 0.87621 1.22460 0.98731 1.00557 0.96778 1.20423 0.94928 0.93399 0.83691 0.92316 1.42858 1.62725 1.19840 1.13741 1.19042 1.21751 0.99443 0.94249 0.91476 1.25313 1.01270 1.01388 0.97237 1.69853 1.44815 1.39485 1.09315 0.85601 0.78873 0.81544 0.76896 1.20661 1.22688 1.18677 1.21598 0.98523 0.96915 0.95531 0.92952 1.21631 0.96784 0.99195 1.01562 1.21517 0.89023 0.93049 0.95859 0.92113 0.91950 0.86172 0.88435 0.88592 0.85251 0.74808 0.88066 0.88252 0.91269 0.94135 0.80743 0.93601 0.93831 0.91522 0.91747 0.90047 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.80 16 2 O -0.31 -9.27 10.57 -91.83 -0.97 -10.24 16 3 C 0.29 8.24 7.88 85.70 0.68 8.91 16 4 N -0.37 -8.76 11.90 -169.99 -2.02 -10.78 16 5 N -0.34 -5.31 3.97 -367.77 -1.46 -6.78 16 6 C 0.09 0.40 11.44 127.77 1.46 1.86 16 7 C 0.15 2.32 9.09 84.31 0.77 3.08 16 8 C -0.33 -8.52 5.25 -20.08 -0.11 -8.62 16 9 C 0.60 18.48 7.58 86.61 0.66 19.13 16 10 O -0.59 -22.92 16.51 -4.11 -0.07 -22.98 16 11 N -0.60 -15.84 2.98 -823.81 -2.45 -18.30 16 12 C 0.11 2.41 5.46 86.36 0.47 2.88 16 13 C -0.14 -4.44 5.66 30.67 0.17 -4.27 16 14 C 0.18 6.38 2.19 45.01 0.10 6.48 16 15 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 16 N -0.75 -33.45 4.21 -322.83 -1.36 -34.81 16 17 C -0.21 -11.56 10.41 84.03 0.87 -10.68 16 18 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 19 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 20 N -0.98 -61.77 13.97 21.65 0.30 -61.46 16 21 Si 0.94 45.72 27.74 68.60 1.90 47.62 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 24 H -0.26 -11.83 6.52 99.48 0.65 -11.19 16 25 C -0.11 -3.22 2.44 -10.86 -0.03 -3.25 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 C -0.13 -3.89 9.03 71.98 0.65 -3.24 16 28 C 0.13 3.41 5.70 86.22 0.49 3.90 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.24 1.40 7.29 -2.91 -0.02 1.38 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.80 4.76 -2.39 -0.01 1.79 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.36 16.20 5.37 -92.71 -0.50 15.70 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.04 1.46 7.36 -2.39 -0.02 1.44 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 45 H 0.08 2.36 6.99 -2.39 -0.02 2.35 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -82.95 372.97 2.17 -80.78 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.43 Total: 22.00 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 7.87 Total: 14.95 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -7.00 Total: -132.13 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.04 Total: -33.23 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -82.95 2.17 -80.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036134442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.670 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds