Wall clock time and date at job start Tue Mar 31 2020 14:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34784 * 120.62829 * 126.41175 * 5 4 2 7 7 O 1.21280 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99526 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46552 * 180.02562 * 8 6 5 10 10 C 1.36229 * 116.99899 * 180.02562 * 9 8 6 11 11 C 1.40113 * 126.04832 * 359.68922 * 10 9 8 12 12 N 1.30873 * 108.35826 * 179.81906 * 11 10 9 13 13 N 1.40085 * 108.31941 * 0.43909 * 12 11 10 14 14 C 1.46496 * 126.07803 * 179.75739 * 13 12 11 15 15 C 1.35586 * 126.05545 * 179.97438 * 10 9 8 16 16 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 17 17 C 1.53195 * 108.89273 * 53.53793 * 16 5 4 18 18 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 19 19 H 1.09007 * 109.45640 * 298.70737 * 18 2 1 20 20 N 1.46499 * 109.46160 * 58.66119 * 18 2 1 21 21 C 1.36928 * 120.00250 * 205.00378 * 20 18 2 22 22 H 1.08000 * 120.00193 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00515 * 180.02562 * 21 20 18 24 24 N 1.31626 * 119.99431 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00596 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46788 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47413 * 119.99496 * 25 23 21 28 28 H 1.48498 * 109.46785 * 239.99788 * 25 23 21 29 29 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 30 30 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 31 31 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 32 32 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 33 33 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 34 34 H 1.08996 * 109.47104 * 299.99859 * 8 6 5 35 35 H 1.08994 * 109.47167 * 60.00297 * 8 6 5 36 36 H 1.08000 * 125.82745 * 0.02562 * 11 10 9 37 37 H 1.09006 * 109.46741 * 269.95609 * 14 13 12 38 38 H 1.08991 * 109.47237 * 29.95472 * 14 13 12 39 39 H 1.08997 * 109.47360 * 149.95999 * 14 13 12 40 40 H 1.07999 * 126.20962 * 0.02562 * 15 10 9 41 41 H 1.09002 * 109.58751 * 173.39743 * 16 5 4 42 42 H 1.08996 * 109.58750 * 293.67928 * 16 5 4 43 43 H 1.08997 * 109.50046 * 65.38734 * 17 16 5 44 44 H 1.09003 * 109.49733 * 185.48713 * 17 16 5 45 45 H 0.97007 * 119.99658 * 24.99911 * 20 18 2 46 46 H 0.97006 * 119.99397 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3863 2.1784 7 8 3.7730 0.1052 3.1639 8 6 5.7805 -0.5019 2.0816 9 8 6.3767 0.0318 3.2656 10 6 7.7367 0.0043 3.3396 11 6 8.6054 -0.5044 2.3650 12 7 9.8343 -0.3533 2.7889 13 7 9.7931 0.2479 4.0535 14 6 10.9502 0.5894 4.8845 15 6 8.4891 0.4593 4.3717 16 6 4.1053 -1.4267 -0.0306 17 6 3.5713 -0.6980 -1.2679 18 6 2.0409 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2352 20 7 1.5266 -0.0530 -2.4453 21 6 1.3965 -0.7493 -3.6171 22 1 1.6734 -1.7923 -3.6592 23 6 0.9097 -0.1143 -4.7515 24 7 0.5727 1.1571 -4.7004 25 14 0.7328 -1.0639 -6.3503 26 1 1.1770 -2.4660 -6.1449 27 1 -0.6891 -1.0523 -6.7783 28 1 1.5706 -0.4282 -7.3988 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6052 -1.7215 1.2981 33 1 1.7638 -0.1579 2.1389 34 1 6.0580 -1.5507 1.9765 35 1 6.1327 0.0559 1.2139 36 1 8.3113 -0.9431 1.4230 37 1 11.1946 -0.2535 5.5310 38 1 11.8030 0.8157 4.2446 39 1 10.7139 1.4599 5.4964 40 1 8.1191 0.9078 5.2818 41 1 5.1896 -1.3246 0.0139 42 1 3.8397 -2.4824 -0.0852 43 1 3.9164 0.3358 -1.2585 44 1 3.9340 -1.1951 -2.1676 45 1 1.2782 0.8839 -2.4076 46 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036157018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:09 Heat of formation + Delta-G solvation = 5.175881 kcal Electronic energy + Delta-G solvation = -27077.651441 eV Core-core repulsion = 23197.366953 eV Total energy + Delta-G solvation = -3880.284488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25684 -41.32806 -39.39158 -38.43698 -36.18200 -34.50853 -33.85554 -33.04961 -31.33744 -30.95728 -29.44526 -27.40831 -27.13795 -26.37377 -24.37771 -23.06693 -22.34896 -22.07812 -21.17703 -20.08825 -19.21324 -19.00572 -17.95121 -17.40156 -17.15138 -16.75728 -16.39065 -16.35437 -15.71321 -15.58544 -15.40074 -15.34493 -15.25248 -14.89947 -14.51654 -14.17650 -13.96597 -13.63235 -13.44822 -13.40613 -13.19131 -13.13444 -12.90301 -12.87331 -12.74011 -12.45367 -12.13592 -12.06616 -12.02141 -11.82284 -11.71409 -11.64750 -11.12596 -10.95724 -10.75536 -10.43359 -9.69841 -8.94091 -8.90541 -7.89320 -5.16536 0.80076 1.35412 1.49068 1.49881 1.50603 1.59775 1.74539 1.76814 2.58976 2.60987 3.38301 3.44921 3.77889 3.81226 3.86295 3.88811 4.02886 4.08182 4.14259 4.17873 4.27406 4.33202 4.42858 4.48733 4.52522 4.59320 4.68736 4.73596 4.75482 4.80741 4.82560 4.86232 5.00098 5.04136 5.18456 5.25074 5.34035 5.42978 5.52821 5.58699 5.66083 5.98882 6.28448 6.32538 6.44157 6.59248 7.06886 7.38826 8.15693 8.38120 9.34504 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.002411 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.958056 B =11609.789032 C =12629.080026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.051 0.949 4 C 0.128 3.872 5 N -0.602 5.602 6 C 0.515 3.485 7 O -0.573 6.573 8 C 0.051 3.949 9 O -0.305 6.305 10 C -0.056 4.056 11 C -0.007 4.007 12 N -0.304 5.304 13 N -0.371 5.371 14 C 0.097 3.903 15 C 0.026 3.974 16 C 0.110 3.890 17 C -0.145 4.145 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.733 5.733 21 C -0.225 4.225 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.262 1.262 27 H -0.300 1.300 28 H -0.299 1.299 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.209 0.791 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.094 -5.634 19.330 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.005 3.995 5 N -0.335 5.335 6 C 0.303 3.697 7 O -0.452 6.452 8 C -0.027 4.027 9 O -0.217 6.217 10 C -0.110 4.110 11 C -0.192 4.192 12 N -0.128 5.128 13 N -0.159 5.159 14 C -0.042 4.042 15 C -0.119 4.119 16 C -0.012 4.012 17 C -0.185 4.185 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.371 5.371 21 C -0.357 4.357 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.797 3.203 26 H -0.187 1.187 27 H -0.227 1.227 28 H -0.226 1.226 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.226 0.774 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.221 0.779 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.201 0.799 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.026 -5.616 19.710 27.964 hybrid contribution -1.418 0.458 -1.371 2.025 sum 17.608 -5.158 18.339 25.941 Atomic orbital electron populations 1.21579 0.94057 1.02086 1.01120 1.21610 0.96621 0.99095 0.94699 0.93038 1.21609 0.78708 1.01507 0.97641 1.48121 1.06919 1.60225 1.18222 1.20543 0.89411 0.77305 0.82398 1.90692 1.76053 1.45750 1.32707 1.22513 0.89312 1.02414 0.88442 1.86035 1.15477 1.80370 1.39863 1.18935 0.83418 1.10642 0.97999 1.24442 0.89684 1.03387 1.01672 1.77224 1.21618 1.18029 0.95979 1.48665 1.05987 1.47255 1.13982 1.22229 0.84974 1.03242 0.93739 1.22012 0.83542 1.05345 1.01040 1.22028 0.99232 0.97962 0.81953 1.22497 0.98122 1.00243 0.97681 1.20470 0.92014 0.95402 0.85266 0.93113 1.42622 1.76870 1.10883 1.06771 1.19643 1.33260 0.94457 0.88340 0.90183 1.25500 1.03440 0.96930 1.01343 1.69835 1.52257 1.11156 1.29105 0.85153 0.76450 0.78446 0.80223 1.18665 1.22748 1.22631 0.91882 0.94137 0.92140 0.89426 0.90043 0.86192 0.87323 0.77440 0.89260 0.88767 0.86773 0.77888 0.87019 0.88804 0.93570 0.90986 0.79875 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.02 71.98 0.65 -3.49 16 2 C -0.10 -3.16 2.46 -10.71 -0.03 -3.19 16 3 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.40 5.72 86.36 0.49 3.90 16 5 N -0.60 -14.66 2.97 -818.91 -2.44 -17.10 16 6 C 0.51 13.84 7.78 87.66 0.68 14.52 16 7 O -0.57 -20.55 15.91 16.01 0.25 -20.29 16 8 C 0.05 1.00 3.91 71.24 0.28 1.28 16 9 O -0.31 -7.65 9.76 -77.13 -0.75 -8.40 16 10 C -0.06 -1.19 6.96 22.11 0.15 -1.04 16 11 C -0.01 -0.12 11.07 85.29 0.94 0.82 16 12 N -0.30 -6.38 12.57 -56.84 -0.71 -7.10 16 13 N -0.37 -6.12 4.04 -368.58 -1.49 -7.61 16 14 C 0.10 0.65 11.48 127.77 1.47 2.12 16 15 C 0.03 0.45 11.56 83.45 0.96 1.42 16 16 C 0.11 2.18 6.34 86.36 0.55 2.73 16 17 C -0.14 -4.23 5.67 30.68 0.17 -4.06 16 18 C 0.18 6.24 2.19 45.03 0.10 6.34 16 19 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 20 N -0.73 -34.57 4.41 -322.77 -1.42 -35.99 16 21 C -0.22 -11.74 9.93 84.03 0.83 -10.91 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 24 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 25 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.56 7.36 -2.38 -0.02 1.54 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.35 7.00 -2.39 -0.02 2.34 16 34 H 0.12 1.53 7.89 -2.39 -0.02 1.52 16 35 H 0.11 1.70 7.65 -2.39 -0.02 1.68 16 36 H 0.21 2.57 7.69 -2.91 -0.02 2.55 16 37 H 0.09 0.36 8.14 -2.38 -0.02 0.35 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.11 1.44 5.93 -2.39 -0.01 1.43 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.37 19.43 7.50 -92.70 -0.70 18.74 16 46 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -77.34 377.92 3.76 -73.58 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.29 Total: 27.82 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 7.73 Total: 6.43 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -5.78 Total: -126.19 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.50 Total: -28.70 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -77.34 3.76 -73.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036157018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.753 kcal (2) G-P(sol) polarization free energy of solvation -77.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds